Name: Desertimonas flava DSM 104921
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158424

Type strain:

Species: Desertimonas flava

Culture col. no.: DSM 104921, KCTC 39917, NBRC 112924, SYSU D60003

Strain history: <- Wenjun Li, Sun Sat-Sen Univ.

NCBI tax ID(s): 2064846 (species)

Section

Desertimonas flava DSM 104921 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from From desert soil samples.

colony-forming
Gram-positive
oval-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Acidimicrobiia*
	Order	*Acidimicrobiales*
	Family	*Ilumatobacteraceae*
	Genus	*Desertimonas*
	Species	**Desertimonas flava**
	Full Scientific Name (LPSN)	Desertimonas flava Asem et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66746]	Gram stain	positive

[Ref.: #66746]	Cell length	1 µm

[Ref.: #66746]	Cell width	0.7 µm

[Ref.: #66746]	Cell shape	oval-shaped

[Ref.: #66746]	Motility	no

[Ref.: #66746]	Colony color	yellow
[Ref.: #66746]	Colony shape	circular
[Ref.: #66746]	Incubation period	14 days
[Ref.: #66746]	Cultivation medium used	R2A medium

Information on culture and growth conditions Culture and growth conditions

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Culture medium

0.1xTSA

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

LB (Luria-Bertani) agar

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Culture medium growth

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Culture medium

Marine agar (MA)

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Culture medium growth

		Temperature
[Ref.: #66746]	optimum	28 °C
[Ref.: #66746]	growth	15-37 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #66746]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66746]			optimum	7
[Ref.: #66746]		no	growth	6-7

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66746]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66746]		NaCl		growth	0.5	%(w/v)
[Ref.: #66746]		NaCl		optimum	0	%(w/v)

[Ref.: #66746]	Observation	The diagnostic amino acid is LL-diaminopimelic acid.
[Ref.: #66746]	Observation	The respiratory menaquinones are MK-9(H8), MK-9(H4) and MK-9(H6).
[Ref.: #66746]	Observation	The diamino acid of peptidoglycan is LL-diaminopimelic acid, along with the amino acids alanine, aspartic acid, glutamatic acid and glycine.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66746]	arabinose ChEBI	-	carbon source
[Ref.: #66746]	cellobiose ChEBI	-	carbon source
[Ref.: #66746]	cellulose ChEBI	-	hydrolysis
[Ref.: #66746]	D-galactose ChEBI	-	carbon source
[Ref.: #66746]	D-glucose ChEBI	+	builds acid from
[Ref.: #66746]	D-mannitol ChEBI	-	carbon source
[Ref.: #66746]	D-mannose ChEBI	-	carbon source
[Ref.: #66746]	D-ribose ChEBI	-	carbon source
[Ref.: #66746]	D-sorbitol ChEBI	-	carbon source
[Ref.: #66746]	D-xylose ChEBI	-	carbon source
[Ref.: #66746]	fumarate ChEBI	+	carbon source
[Ref.: #66746]	gelatin ChEBI	-	hydrolysis
[Ref.: #66746]	glucose ChEBI	-	carbon source
[Ref.: #66746]	glycerol ChEBI	+	carbon source
[Ref.: #66746]	glycine ChEBI	-	nitrogen source
[Ref.: #66746]	hydrogen sulfide ChEBI	-	assimilation
[Ref.: #66746]	hypoxanthine ChEBI	-	nitrogen source
[Ref.: #66746]	L-alanine ChEBI	-	nitrogen source
[Ref.: #66746]	L-arginine ChEBI	-	nitrogen source
[Ref.: #66746]	L-cystine ChEBI	+	assimilation
[Ref.: #66746]	L-glutamate ChEBI	+	assimilation
[Ref.: #66746]	L-histidine ChEBI	+	assimilation
[Ref.: #66746]	L-lysine ChEBI	+	assimilation
[Ref.: #66746]	L-methionine ChEBI	-	nitrogen source
[Ref.: #66746]	L-phenylalanine ChEBI	+	assimilation
[Ref.: #66746]	L-proline ChEBI	-	nitrogen source
[Ref.: #66746]	L-rhamnose ChEBI	-	carbon source
[Ref.: #66746]	L-serine ChEBI	-	nitrogen source
[Ref.: #66746]	L-sorbose ChEBI	-	carbon source
[Ref.: #66746]	L-threonine ChEBI	+	assimilation
[Ref.: #66746]	L-tryptophan ChEBI	+	assimilation
[Ref.: #66746]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #66746]	L-valine ChEBI	+	assimilation
[Ref.: #66746]	maltose ChEBI	-	carbon source
[Ref.: #66746]	myo-inositol ChEBI	-	carbon source
[Ref.: #66746]	raffinose ChEBI	-	carbon source
[Ref.: #66746]	starch ChEBI	-	hydrolysis
[Ref.: #66746]	sucrose ChEBI	+	carbon source
[Ref.: #66746]	tartrate ChEBI	+	carbon source
[Ref.: #66746]	tween 20 ChEBI	+	hydrolysis
[Ref.: #66746]	tween 40 ChEBI	+	hydrolysis
[Ref.: #66746]	tween 60 ChEBI	+	hydrolysis
[Ref.: #66746]	tween 80 ChEBI	-	hydrolysis
[Ref.: #66746]	urea ChEBI	+	hydrolysis
[Ref.: #66746]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66746]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #66746]	acid phosphatase	+	3.1.3.2
[Ref.: #66746]	alkaline phosphatase	+	3.1.3.1
[Ref.: #66746]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #66746]	alpha-galactosidase	+	3.2.1.22
[Ref.: #66746]	alpha-glucosidase	+	3.2.1.20
[Ref.: #66746]	alpha-mannosidase	+	3.2.1.24
[Ref.: #66746]	beta-galactosidase	+	3.2.1.23
[Ref.: #66746]	beta-glucosidase	+	3.2.1.21
[Ref.: #66746]	catalase	-	1.11.1.6
[Ref.: #66746]	cystine arylamidase	+	3.4.11.3
[Ref.: #66746]	cytochrome oxidase	+	1.9.3.1
[Ref.: #66746]	esterase (C 4)	+
[Ref.: #66746]	esterase Lipase (C 8)	+
[Ref.: #66746]	leucine arylamidase	+	3.4.11.1
[Ref.: #66746]	lipase (C 14)	+
[Ref.: #66746]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #66746]	nitrate reductase	+	1.7.99.4
[Ref.: #66746]	trypsin	+	3.4.21.4
[Ref.: #66746]	urease	+	3.5.1.5
[Ref.: #66746]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C16:0	29.1
C16:1 w7c and/or C16:1 w6c	18.8
C16:0 iso	14.8
C17:0 anteiso	7.5
C17:0 iso	3.6
C15:0 iso	3
C12:0	2.6
C16:1 iso H	2.1
C14:0	2.1
C18:1 w7c and/or C18:1 w6c	1.9
C18:1 2OH	1.7
C17:1 anteiso w9c	1.4
C17:1 w8c	1.3
C17:0 2OH	1
C10:0 3OH	1
C16:0 anteiso	1
C15:0 anteiso	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From desert soil samples
[Ref.: #67771]	Geographic location (country and/or sea, region)	Xinjiang
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #65100]	Sample type/isolated from	Desert soil sample
[Ref.: #65100]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #65100]	Country	China
[Ref.: #65100]	Country ISO 3 Code	CHN
[Ref.: #65100]	Continent	Asia

[Ref.: #66746]	Sample type/isolated from	a soil sample
[Ref.: #66746]	Sampling date	2015-09
[Ref.: #66746]	Geographic location (country and/or sea, region)	Gurbantunggut desert
[Ref.: #66746]	Country	China
[Ref.: #66746]	Country ISO 3 Code	CHN
[Ref.: #66746]	Continent	Asia
[Ref.: #66746]	Geographic location	44.6600°/87.1989°
[Ref.: #66746]	Enrichment culture	TSA
[Ref.: #66746]	Enrichment culture composition	0.1 trypticase soy agar
[Ref.: #66746]	Enrichment culture duration	30 adys
[Ref.: #66746]	Enrichment culture temperature	28 ̊C
[Ref.: #66746]	Isolation/enrichment procedure	Following purification through repeated streaking, the strain was routinely cultivated on Reasoner's 2A (R2A) agar at 28 C for 10-20 days.
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65100]	Acidimicrobiales bacterium SYSU D60003 16S ribosomal RNA gene, partial sequence	MG696552	1446	ENA	2064846 tax ID

[Ref.: #65100]	GC-content	70.2 mol%
[Ref.: #66746]	GC-content	70.2 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #65100]

Culture collection no.

DSM 104921, KCTC 39917, NBRC 112924, SYSU D60003

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Desertimonas flava gen. nov., sp. nov. isolated from a desert soil, and proposal of Ilumatobacteraceae fam. nov.	Asem MD, Shi L, Jiao JY, Wang D, Han MX, Dong L, Liu F, Salam N, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003038	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65100

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104921

#66746

Mipeshwaree Devi Asem, Lei Shi, Jian-Yu Jiao, Dong Wang, Ming-Xian Han, Lei Dong, Feng Liu, Nimaichand Salam and Wen-Jun Li: Desertimonas flava gen. nov., sp. nov. isolated from a desert soil, and proposal of Ilumatobacteraceae fam. nov.. IJSEM 68: 3593 - 3599 2018 ( DOI 10.1099/ijsem.0.003038 , PubMed 30285911 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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