Name: Streptomyces durbertensis NEAU-S1GS20
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158423

Type strain:

Species: Streptomyces durbertensis

Strain Designation: NEAU-S1GS20

Culture col. no.: DSM 104538, CCTCC AA 2017006

Strain history: <- J. Zhao; Northeast Agricultural University, Harbin, P.R. CHINA; NEAU-S1GS20 <- Tong Pan, School of Life Science, Northeast Agricultural University; NEAU-S1GS20

NCBI tax ID(s): 2448886 (species)

SI-ID 401204

DSM 104538

Section

Streptomyces durbertensis NEAU-S1GS20 is an aerobe, spore-forming, mesophilic bacterium that forms filamentous colonies and was isolated from Soil.

colony-forming
Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces durbertensis**
	Full Scientific Name (LPSN)	Streptomyces durbertensis Yu et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #66756]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #66756]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %91.988

[Ref.: #66756]	Colony color	yellow
[Ref.: #66756]	Colony shape	filamentous
[Ref.: #66756]	Incubation period	7 days
[Ref.: #66756]	Cultivation medium used	ISP 3

[Ref.: #66756]	Pigment production	no
[Ref.: #66756]	Pigment name	diffusible pigments or melanin

Multimedia content

[Ref.: #65099]

Caption:

Medium 65 28°C

[Ref.: #65099]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65099]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #65099]

Culture medium growth

[Ref.: #65099]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65099]

Culture medium composition

expand / minimize

[Ref.: #66756]

Culture medium

Benett's media

[Ref.: #66756]

Culture medium growth

[Ref.: #66756]

Culture medium

[Ref.: #66756]

Culture medium growth

[Ref.: #66756]

Culture medium

ISP 2

[Ref.: #66756]

Culture medium growth

[Ref.: #66756]

Culture medium

ISP 3

[Ref.: #66756]

Culture medium growth

[Ref.: #66756]

Culture medium

ISP 4

[Ref.: #66756]

Culture medium growth

[Ref.: #66756]

Culture medium

ISP 5

[Ref.: #66756]

Culture medium growth

[Ref.: #66756]

Culture medium

ISP 6

[Ref.: #66756]

Culture medium growth

[Ref.: #66756]

Culture medium

ISP 7

[Ref.: #66756]

Culture medium growth

[Ref.: #66756]

Culture medium

Nutrient agar (NA)

[Ref.: #66756]

Culture medium growth

[Ref.: #66756]

Culture medium

tryptic soy agar (TSA)

[Ref.: #66756]

Culture medium growth

		Temperature
[Ref.: #65099]	growth	28 °C
[Ref.: #66756]	optimum	28 °C
[Ref.: #66756]	growth	18-45 °C

[Ref.: #65099]	Temperature range	mesophilic
[Ref.: #66756]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #66756]			optimum	7
[Ref.: #66756]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #66756]

Oxygen tolerance

aerobe

[Ref.: #66756]	Spore description	the aerial mycelium differentiates into straight or flexuous spore chains with rough-surfaced spores
[Ref.: #66756]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #66756]		NaCl		growth	0-10	%(w/v)
[Ref.: #66756]		NaCl		optimum	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #66756]	creatine ChEBI	-	nitrogen source
[Ref.: #66756]	D-fructose ChEBI	+	carbon source
[Ref.: #66756]	D-galactose ChEBI	-	carbon source
[Ref.: #66756]	D-glucose ChEBI	+	carbon source
[Ref.: #66756]	D-mannitol ChEBI	+	carbon source
[Ref.: #66756]	D-ribose ChEBI	-	carbon source
[Ref.: #66756]	D-sorbitol ChEBI	+	carbon source
[Ref.: #66756]	D-xylose ChEBI	-	carbon source
[Ref.: #66756]	esculin ChEBI	-	hydrolysis
[Ref.: #66756]	gelatin ChEBI	+	degradation
[Ref.: #66756]	glycine ChEBI	+	nitrogen source
[Ref.: #66756]	L-alanine ChEBI	-	nitrogen source
[Ref.: #66756]	L-arabinose ChEBI	-	carbon source
[Ref.: #66756]	L-arginine ChEBI	+	nitrogen source
[Ref.: #66756]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #66756]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #66756]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #66756]	L-glutamine ChEBI	-	nitrogen source
[Ref.: #66756]	L-proline ChEBI	-	nitrogen source
[Ref.: #66756]	L-rhamnose ChEBI	+	carbon source
[Ref.: #66756]	L-serine ChEBI	-	nitrogen source
[Ref.: #66756]	L-threonine ChEBI	-	nitrogen source
[Ref.: #66756]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #66756]	lactose ChEBI	+	carbon source
[Ref.: #66756]	maltose ChEBI	+	carbon source
[Ref.: #66756]	mannose ChEBI	+	carbon source
[Ref.: #66756]	milk	+	degradation
[Ref.: #66756]	myo-inositol ChEBI	-	carbon source
[Ref.: #66756]	nitrate ChEBI	-	reduction
[Ref.: #66756]	raffinose ChEBI	+	carbon source
[Ref.: #66756]	starch ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #66756]		hydrogen sulfide ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #66756]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65099]	Sample type/isolated from	Soil
[Ref.: #65099]	Geographic location (country and/or sea, region)	Heilongjiang Province, Daqing City, Durbert Mongolian Autonomous County (46° 30' N, 124° 10' E)
[Ref.: #65099]	Country	China
[Ref.: #65099]	Country ISO 3 Code	CHN
[Ref.: #65099]	Continent	Asia
[Ref.: #65099]	Geographic location	46.5000°/124.1670°

[Ref.: #66756]	Sample type/isolated from	a saline-alkaline soil
[Ref.: #66756]	Geographic location (country and/or sea, region)	Durbert Mongolian Autonomous County, Daqing City, Heilongjiang Province
[Ref.: #66756]	Country	China
[Ref.: #66756]	Country ISO 3 Code	CHN
[Ref.: #66756]	Continent	Asia
[Ref.: #66756]	Geographic location	43.5000°/124.1670°
[Ref.: #66756]	Enrichment culture	CMKA medium
[Ref.: #66756]	Enrichment culture composition	cycloheximide (50 mg l-1) and nalidixic acid (20 mg l-1)
[Ref.: #66756]	Enrichment culture duration	14 days
[Ref.: #66756]	Enrichment culture temperature	28 ̊C
[Ref.: #66756]	Isolation/enrichment procedure	The soil sample (5 g) was suspended in distilled water (2 ml) followed by an ultrasonic treatment (160W) for 3 min. After the addition of distilled water (43 ml), 3 % (w/v) yeast extract (1 ml) and 2.5 % (w/v) SDS (1 ml), the soil suspension was incubated at 28°C and 250 r.p.m. on a rotary shaker for 20 min. Then, 200 µl of the suspension was spread on CMKA medium supplemented with cycloheximide (50 mg l-1 ) and nalidixic acid (20 mg l-1) and incubated for 14 days of aerobic incubation at 28°C.
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65099]	Streptomyces sp. strain NEAU-S1GS20 16S ribosomal RNA gene, partial sequence	KY318506	1520	ENA	2448886 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces durbertensis DSM 104538	GCA_014156695	contig	GenBank	2448886 tax ID	*
[Ref.: #66792]	Streptomyces durbertensis strain DSM 104538	2448886.3	wgs	PATRIC	2448886 tax ID	*

[Ref.: #65099]

GC-content

72.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces durbertensis strain DSM 104538 PATRIC: 2448886.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces durbertensis strain DSM 104538 PATRIC: 2448886.3
[Ref.: #69480]	motile	no	92.746	no
[Ref.: #69480]	gram-positive	yes	91.892	yes
[Ref.: #69480]	anaerobic	no	98.806	no
[Ref.: #69480]	aerobic	yes	90.01	no
[Ref.: #69480]	halophile	no	79.611	no
[Ref.: #69480]	spore-forming	yes	93.478	yes
[Ref.: #69480]	glucose-util	yes	90.624	yes
[Ref.: #69480]	flagellated	no	97.648	no
[Ref.: #69480]	thermophile	no	99.197	yes
[Ref.: #69480]	glucose-ferment	no	89.621	no

Availability in culture collections External links

[Ref.: #65099]

Culture collection no.

DSM 104538, CCTCC AA 2017006

[Ref.: #111225]

SI-ID 401204

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces alkaliterrae sp. nov., isolated from an alkaline soil, and emended descriptions of Streptomyces alkaliphilus, Streptomyces calidiresistens and Streptomyces durbertensis.	Swiecimska M, Golinska P, Nouioui I, Wypij M, Rai M, Sangal V, Goodfellow M	Syst Appl Microbiol	10.1016/j.syapm.2020.126153	2020	*
Phylogeny	Streptomyces durbertensis sp. nov., isolated from saline-alkali soil.	Yu Y, Fu Y, Guo X, Yan R, Wang H, Zhao J, Wang X, Zhang J, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003047	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65099

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104538

#66756

Yang Yu, Yansong Fu, Xiaowei Guo, Rui Yan, Han Wang, Junwei Zhao, Xiangjing Wang, Ji Zhang, Wensheng Xiang: Streptomyces durbertensis sp. nov., isolated from saline-alkali soil. IJSEM 68: 3635 - 3640 2018 ( DOI 10.1099/ijsem.0.003047 , PubMed 30303472 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111225

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401204.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces durbertensis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Streptomyces durbertensis strain DSM 104538

Streptomyces durbertensis strain DSM 104538

Change proposal

Change proposal