Name: Carnobacterium antarcticum CP-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158403

Type strain:

Species: Carnobacterium antarcticum

Strain Designation: CP-1

Culture col. no.: DSM 103363, CGMCC 1.15643

Strain history: <- J. Chen, Zhejiang Wanli Univ., Ningbo, China; CP-1 <- S. Zhu and J. Chen

NCBI tax ID(s): 2126436 (species)

SI-ID 396976

DSM 103363

Section

Carnobacterium antarcticum CP-1 is a facultative anaerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from sandy soil collected from the surrounding environment of the Davis Station.

colony-forming
Gram-positive
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Carnobacteriaceae*
	Genus	*Carnobacterium*
	Species	**Carnobacterium antarcticum**
	Full Scientific Name (LPSN)	Carnobacterium antarcticum Zhu et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65473]	Gram stain	positive

[Ref.: #65473]	Cell length	1.0-1.5 µm

[Ref.: #65473]	Cell width	0.8-1.0 µm

[Ref.: #65473]	Cell shape	rod-shaped

[Ref.: #65473]	Motility	yes

[Ref.: #65473]	Colony size	1-2 mm
[Ref.: #65473]	Colony shape	circular
[Ref.: #65473]	Incubation period	3 days
[Ref.: #65473]	Cultivation medium used	Tryptic soy broth solid medium

Information on culture and growth conditions Culture and growth conditions

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Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

Tryptic soy broth solid medium

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Culture medium growth

		Temperature
[Ref.: #65079]	growth	30 °C
[Ref.: #65473]	growth	4-36 °C
[Ref.: #65473]	optimum	28-32 °C

[Ref.: #65079]	Temperature range	mesophilic
[Ref.: #65473]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65473]			optimum	8-8.5
[Ref.: #65473]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

facultative anaerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65473]		NaCl		growth	0-5	%(w/v)
[Ref.: #65473]		NaCl		optimum	1	%(w/v)

[Ref.: #65473]	Observation	without flagella
[Ref.: #65473]	Observation	occurrs singly or in pairs or short chains
[Ref.: #65473]	Observation	cell wall contained meso-diaminopimelic acid and of the peptidoglycan type A1g

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65473]	amygdalin ChEBI	-	builds acid from
[Ref.: #65473]	arbutin ChEBI	-	builds acid from
[Ref.: #65473]	cellobiose ChEBI	-	builds acid from
[Ref.: #65473]	D-arabinose ChEBI	-	builds acid from
[Ref.: #65473]	D-arabitol ChEBI	-	builds acid from
[Ref.: #65473]	D-fructose ChEBI	+	builds acid from
[Ref.: #65473]	D-fucose ChEBI	-	builds acid from
[Ref.: #65473]	D-galactose ChEBI	-	builds acid from
[Ref.: #65473]	D-glucose ChEBI	+	builds acid from
[Ref.: #65473]	D-lyxose ChEBI	-	builds acid from
[Ref.: #65473]	D-mannitol ChEBI	-	builds acid from
[Ref.: #65473]	D-mannose ChEBI	+	builds acid from
[Ref.: #65473]	D-ribose ChEBI	-	builds acid from
[Ref.: #65473]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65473]	D-tagatose ChEBI	-	builds acid from
[Ref.: #65473]	D-xylose ChEBI	-	builds acid from
[Ref.: #65473]	erythritol ChEBI	-	builds acid from
[Ref.: #65473]	esculin ChEBI	+	growth
[Ref.: #65473]	esculin ferric citrate	-	hydrolysis
[Ref.: #65473]	galactitol ChEBI	-	builds acid from
[Ref.: #65473]	gelatin ChEBI	-	hydrolysis
[Ref.: #65473]	gentiobiose ChEBI	-	builds acid from
[Ref.: #65473]	glucose ChEBI	+	builds gas from
[Ref.: #65473]	glycerol ChEBI	+	growth
[Ref.: #65473]	glycogen ChEBI	-	builds acid from
[Ref.: #65473]	inulin ChEBI	-	builds acid from
[Ref.: #65473]	L-arabinose ChEBI	-	builds acid from
[Ref.: #65473]	L-arabitol ChEBI	-	builds acid from
[Ref.: #65473]	L-fucose ChEBI	-	builds acid from
[Ref.: #65473]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65473]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65473]	L-xylose ChEBI	-	builds acid from
[Ref.: #65473]	lactose ChEBI	-	builds acid from
[Ref.: #65473]	maltose ChEBI	-	builds acid from
[Ref.: #65473]	melezitose ChEBI	-	builds acid from
[Ref.: #65473]	melibiose ChEBI	-	builds acid from
[Ref.: #65473]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #65473]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #65473]	myo-inositol ChEBI	-	builds acid from
[Ref.: #65473]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #65473]	O-nitrophenyl-beta-D-galactopyranosid	-	hydrolysis
[Ref.: #65473]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #65473]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #65473]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #65473]	raffinose ChEBI	-	builds acid from
[Ref.: #65473]	ribitol ChEBI	-	builds acid from
[Ref.: #65473]	salicin ChEBI	+	growth
[Ref.: #65473]	starch ChEBI	-	builds acid from
[Ref.: #65473]	sucrose ChEBI	+	builds acid from
[Ref.: #65473]	trehalose ChEBI	-	builds acid from
[Ref.: #65473]	turanose ChEBI	-	builds acid from
[Ref.: #65473]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65473]		hydrogen sulfide ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #65473]		acetoin ChEBI	-
[Ref.: #65473]		indole ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #65473]	acid phosphatase	+	3.1.3.2
[Ref.: #65473]	alkaline phosphatase	+	3.1.3.1
[Ref.: #65473]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #65473]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65473]	alpha-glucosidase	-	3.2.1.20
[Ref.: #65473]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65473]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #65473]	beta-galactosidase	-	3.2.1.23
[Ref.: #65473]	beta-glucosidase	+	3.2.1.21
[Ref.: #65473]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65473]	catalase	-	1.11.1.6
[Ref.: #65473]	cystine arylamidase	+	3.4.11.3
[Ref.: #65473]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65473]	esterase (C 4)	+
[Ref.: #65473]	esterase Lipase (C 8)	+
[Ref.: #65473]	leucine arylamidase	+	3.4.11.1
[Ref.: #65473]	lipase (C 14)	+
[Ref.: #65473]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65473]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65473]	nitrate reductase	-	1.7.99.4
[Ref.: #65473]	trypsin	-	3.4.21.4
[Ref.: #65473]	urease	-	3.5.1.5
[Ref.: #65473]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65473]

Fatty acid	Percentage
C14:0	60.2
C16:1ω9c	22.5
C16:0	8.8
C12:0	5.8
C10:0	1.3

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65079]	Sample type/isolated from	sandy soil collected from the surrounding environment of the Davis Station
[Ref.: #65079]	Country	Antarctica
[Ref.: #65079]	Country ISO 3 Code	ATA
[Ref.: #65079]	Continent	Australia and Oceania
[Ref.: #65079]	Geographic location	-68.5800°/77.9600°

[Ref.: #65473]	Sample type/isolated from	sandy soil near the Davis Station
[Ref.: #65473]	Geographic location (country and/or sea, region)	East
[Ref.: #65473]	Country	Antarctica
[Ref.: #65473]	Country ISO 3 Code	ATA
[Ref.: #65473]	Continent	Australia and Oceania
[Ref.: #65473]	Geographic location	-68.5791°/77.9625°
[Ref.: #65473]	Enrichment culture temperature	8 ̊C
[Ref.: #65473]	Isolation date	February 201
[Ref.: #65473]	Isolation/enrichment procedure	was isolated from the enrichment using the standard dilution plating technique at 8°C on a solid medium containing 0.5 % tryptone (Oxoid), 0.1 % yeast extract (Oxoid), 1.5 % agar and artificial seawater (half-strength)
* marker position based on {}

Isolation sources categories

#Climate	#Cold	#Polar
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

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Global distribution of 16S sequence MG734178 (>99% sequence identity) for Carnobacterium from Microbeatlas

Aquatic Samples	106
Soil Samples	97
Animal Samples	792
Plant Samples	29
Total Samples	1024

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65079]	Carnobacterium antarcticum strain CP1 16S ribosomal RNA gene, partial sequence	MG734178	1432	ENA	2126436 tax ID

[Ref.: #65079]	GC-content	38.1 mol%
[Ref.: #65473]	GC-content	38.1 mol%	genome sequence analysis

Availability in culture collections External links

[Ref.: #65079]

Culture collection no.

DSM 103363, CGMCC 1.15643

[Ref.: #111206]

SI-ID 396976

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Carnobacterium antarcticum sp. nov., a psychrotolerant, alkaliphilic bacterium isolated from sandy soil in Antarctica.	Zhu S, Lin D, Xiong S, Wang X, Xue Z, Dong B, Shen X, Ma X, Chen J, Yang J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002727	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65079

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103363

#65473

Sidong Zhu, Danqiu Lin, Shangling Xiong, Xing Wang, Zehao Xue, Bingxia Dong, Xudong Shen, Xiangdong Ma, Jigang Chen, Jifang Yang: Carnobacterium antarcticum sp. nov., a psychrotolerant, alkaliphilic bacterium isolated from sandy soil in Antarctica. IJSEM 68: 1672 - 1677 2018 ( DOI 10.1099/ijsem.0.002727 , PubMed 29616891 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#111206

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396976.1 )

* These data were automatically processed and therefore are not curated

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