Xylanibacillus composti (DSM 29793, NCAIM B.02605, K13)

Name: Xylanibacillus composti (DSM 29793, NCAIM B.02605, K13)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158389

Type strain

Strain Designation K13

Culture col. no. DSM 29793 NCAIM B.02605 K13

NCBI tax ID(s) 1572762

Special Collections DSMZ Literature strains

History <- A. Tóth, National Agricultural Res. and Innovation Center, Dept. of Appl and Environmental Microbiol., Budapest, Hungary; K13 <- J. Kukolya

Links

Xylanibacillus composti K13 is a spore-forming, Gram-positive, motile bacterium that forms irregular colonies and was isolated from manure compost.

spore-forming Gram-positive motile rod-shaped colony-forming genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405271

NCAIM B.02605,DSM 29793

@ref 20215

Last LPSN update 2026-02-09 11:38:19

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Xylanibacillus

Species Xylanibacillus composti

Full scientific name Xylanibacillus composti Kukolya et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Flagellum arrangement	Cell length	Cell width	Confidence
65432	positive	rod-shaped	polar
65432				2-3 µm	0.5-0.8 µm
125439						91.7

Colony morphology

@ref	Colony size	Colony color	Colony shape
65432	1-2 mm	pale brownish	irregular

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
65065	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
65432	xylan-containing agar
65432	Reasoner's 2A agar (R2A)
65432	Luria-Betrani agar

Culture temp

@ref	Growth	Type	Temperature (°C)
65065	positive	growth	45
65432	positive	growth	30-50
65432	positive	optimum	35-40

Culture pH

@ref	Ability	Type	PH	PH range
65432	positive	optimum	10
65432	positive	growth	7-10	alkaliphile

Physiology and metabolism

Spore formation

@ref	Spore description	Type of spore	Confidence
65432	spherical and terminal endospore is formed in swollen sporangia	endospore
125439			95.6
125438			93.652

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65432	NaCl	positive	growth	0.5-2 %(w/v)
65432	NaCl	positive	optimum	1 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65432		casein	+	hydrolysis
65432	4853 ChEBI	esculin	+	assimilation
65432	17754 ChEBI	glycerol	+	assimilation
65432	17306 ChEBI	maltose	+	assimilation
65432		potassium 5-dehydro-D-gluconate	+	assimilation

Enzymes

@ref	Value	Activity	Ec
65432	beta-galactosidase	+	3.2.1.23
65432	catalase	-	1.11.1.6
65432	cytochrome oxidase	-	1.9.3.1
65432	esterase	+
65432	esterase Lipase (C 8)	+
65432	naphthol-AS-BI-phosphohydrolase	+
65432	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

65432

Fatty acid	Percentage
C15:0 anteiso	34.4
isoC16:0	17.3
C16:0	10
C15:0 iso	9.8
C17:0 anteiso	9.5
isoC17:0	7.8
C15:0	2.7
C16:1ω11c	1.9
isoC14:0	1.9
C14:0	1.5
C17:0	1.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Composting
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Engineered	#Waste	#Solid waste

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
65065	manure compost	Hungary	HUN	Europe
65432	a hot region of manure compost	Hungary	HUN	Europe	xylan-containing agar	1 g NaNO 3 ; 1 g K 2 HPO 4 ; 3 g NaCl; 0.01 g MnSO 4 ; 0.5 g MgCl 2 ;0.5 g yeast extract; 0.5 g peptone; 3 g xylan; 25 g gar; 1 l distilled water	3 days	45

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1840368v1 assembly for Xylanibacillus composti K13	contig	GCA_018403685	1572762.3	2958945112	1572762	54.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65065	Xylanibacillus composti strain K13 sequence	KX298907	1577		1572762

GC content

@ref	GC-content (mol%)	Method
65432	52.3	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Xylanibacillus composti K13
NCBI: GCA_018403685

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	95.60	no
125439	motility	BacteriaNetⓘ	yes	91.70	no
125439	gram_stain	BacteriaNetⓘ	variable	86.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	89.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Xylanibacillus composti strain K13
PATRIC: 1572762.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	66.96	no
125438	anaerobic	anaerobicⓘ	no	90.57	no
125438	spore-forming	spore-formingⓘ	yes	93.65	yes
125438	aerobic	aerobicⓘ	yes	64.53	no
125438	thermophilic	thermophileⓘ	no	84.46	no
125438	flagellated	motile2+ⓘ	yes	81.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence data of Paenibacillus cisolokensis strain LC2-13A and Xylanibacillus composti strain K-13.	Uke A, Chhe C, Baramee S, Tachaapaikoon C, Pason P, Waeonukul R, Ratanakhanokchai K, Kosugi A.	Data Brief	10.1016/j.dib.2021.107361	2021
Phylogeny	Xylanibacillus composti gen. nov., sp. nov., isolated from compost.	Kukolya J, Bata-Vidacs I, Luzics S, Toth E, Keki Z, Schumann P, Tancsics A, Nagy I, Olasz F, Toth A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002523	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65065	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29793
#65432	József Kukolya, Ildikó Bata-Vidács, Szabina Luzics, Erika Tóth, Zsuzsa Kéki, Peter Schumann, András Táncsics, István Nagy, Ferenc Olasz, Ákos Tóth: Xylanibacillus composti gen. nov., sp. nov., isolated from compost. IJSEM 68: 698 - 702 2018 ( DOI 10.1099/ijsem.0.002523 , PubMed 29458465 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Xylanibacillus composti (DSM 29793, NCAIM B.02605, K13)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Spore formation

Halophily

Metabolite utilization

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_018403685

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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