Name: Xylanibacillus composti K13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158389

Type strain:

Species: Xylanibacillus composti

Strain Designation: K13

Culture col. no.: DSM 29793, NCAIM B.02605

Strain history: <- A. Tóth, National Agricultural Res. and Innovation Center, Dept. of Appl and Environmental Microbiol., Budapest, Hungary; K13 <- J. Kukolya

NCBI tax ID(s): 1572762 (species)

SI-ID 405271

DSM 29793

Section

Xylanibacillus composti K13 is a spore-forming, thermophilic, Gram-positive bacterium that forms irregular colonies and was isolated from manure compost.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Xylanibacillus*
	Species	**Xylanibacillus composti**
	Full Scientific Name (LPSN)	Xylanibacillus composti Kukolya et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65432]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #65432]	Cell shape	rod-shaped

[Ref.: #65432]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.819

[Ref.: #65432]	Flagellum arrangement	polar

[Ref.: #65432]	Cell length	2-3 µm

[Ref.: #65432]	Cell width	0.5-0.8 µm

[Ref.: #65432]	Colony size	1-2 mm
[Ref.: #65432]	Colony color	pale brownish
[Ref.: #65432]	Colony shape	irregular

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65065]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #65065]

Culture medium growth

[Ref.: #65065]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65065]

Culture medium composition

expand / minimize

[Ref.: #65432]

Culture medium

xylan-containing agar

[Ref.: #65432]

Culture medium growth

[Ref.: #65432]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #65432]

Culture medium growth

[Ref.: #65432]

Culture medium

Luria-Betrani agar

[Ref.: #65432]

Culture medium growth

		Temperature
[Ref.: #65065]	growth	45 °C
[Ref.: #65432]	growth	30-50 °C
[Ref.: #65432]	optimum	35-40 °C

[Ref.: #65065]

Temperature range

thermophilic

	pH	Kind of pH		pH
[Ref.: #65432]			optimum	10
[Ref.: #65432]			growth	7-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65432]	Spore description	spherical and terminal endospore is formed in swollen sporangia
[Ref.: #65432]	Type of spore	endospore
[Ref.: #65432]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65432]		NaCl		growth	0.5-2	%(w/v)
[Ref.: #65432]		NaCl		optimum	1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65432]	casein	+	hydrolysis
[Ref.: #65432]	esculin ChEBI	+	assimilation
[Ref.: #65432]	glycerol ChEBI	+	assimilation
[Ref.: #65432]	maltose ChEBI	+	assimilation
[Ref.: #65432]	potassium 5-dehydro-D-gluconate	+	assimilation

	Enzyme	Enzyme activity	EC number
[Ref.: #65432]	beta-galactosidase	+	3.2.1.23
[Ref.: #65432]	catalase	-	1.11.1.6
[Ref.: #65432]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65432]	esterase	+
[Ref.: #65432]	esterase Lipase (C 8)	+
[Ref.: #65432]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65432]	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65432]

Fatty acid	Percentage
C15:0 anteiso	34.4
isoC16:0	17.3
C16:0	10
C15:0 iso	9.8
C17:0 anteiso	9.5
isoC17:0	7.8
C15:0	2.7
C16:1ω11c	1.9
isoC14:0	1.9
C14:0	1.5
C17:0	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65065]	Sample type/isolated from	manure compost
[Ref.: #65065]	Country	Hungary
[Ref.: #65065]	Country ISO 3 Code	HUN
[Ref.: #65065]	Continent	Europe

[Ref.: #65432]	Sample type/isolated from	a hot region of manure compost
[Ref.: #65432]	Country	Hungary
[Ref.: #65432]	Country ISO 3 Code	HUN
[Ref.: #65432]	Continent	Europe
[Ref.: #65432]	Enrichment culture	xylan-containing agar
[Ref.: #65432]	Enrichment culture composition	1 g NaNO 3 ; 1 g K 2 HPO 4 ; 3 g NaCl; 0.01 g MnSO 4 ; 0.5 g MgCl 2 ;0.5 g yeast extract; 0.5 g peptone; 3 g xylan; 25 g gar; 1 l distilled water
[Ref.: #65432]	Enrichment culture duration	3 days
[Ref.: #65432]	Enrichment culture temperature	45 ̊C
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Engineered	#Waste	#Solid waste

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65432]	16S rRNA gene sequence	KX298908		GenBank
[Ref.: #65432]	16S rRNA gene sequence	KX298909		GenBank
[Ref.: #65065]	Xylanibacillus composti strain K13 16S ribosomal RNA gene, partial sequence	KX298907	1577	ENA	1572762 tax ID
[Ref.: #65432]	16S rRNA gene sequence	KX298897		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xylanibacillus composti K13	GCA_018403685	contig	GenBank	1572762 tax ID	*
[Ref.: #66792]	Xylanibacillus composti strain K13	1572762.3	wgs	PATRIC	1572762 tax ID	*

[Ref.: #65432]

GC-content

52.3 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Xylanibacillus composti strain K13 PATRIC: 1572762.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xylanibacillus composti strain K13 PATRIC: 1572762.3
[Ref.: #69480]	motile	yes	88.758	yes
[Ref.: #69480]	gram-positive	yes	89.504	yes
[Ref.: #69480]	anaerobic	no	99.028	no
[Ref.: #69480]	aerobic	yes	84.958	no
[Ref.: #69480]	halophile	no	92.199	yes
[Ref.: #69480]	spore-forming	yes	96.044	yes
[Ref.: #69480]	glucose-util	yes	83.335	no
[Ref.: #69480]	flagellated	yes	87.05	no
[Ref.: #69480]	thermophile	no	99.176	no
[Ref.: #69480]	glucose-ferment	no	91.529	no

Availability in culture collections External links

[Ref.: #65065]

Culture collection no.

DSM 29793, NCAIM B.02605

[Ref.: #111193]

SI-ID 405271

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Xylanibacillus composti gen. nov., sp. nov., isolated from compost.	Kukolya J, Bata-Vidacs I, Luzics S, Toth E, Keki Z, Schumann P, Tancsics A, Nagy I, Olasz F, Toth A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002523	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65065

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29793

#65432

József Kukolya, Ildikó Bata-Vidács, Szabina Luzics, Erika Tóth, Zsuzsa Kéki, Peter Schumann, András Táncsics, István Nagy, Ferenc Olasz, Ákos Tóth: Xylanibacillus composti gen. nov., sp. nov., isolated from compost. IJSEM 68: 698 - 702 2018 ( DOI 10.1099/ijsem.0.002523 , PubMed 29458465 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111193

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405271.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Xylanibacillus composti in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Xylanibacillus composti strain K13

Xylanibacillus composti strain K13

Change proposal

Change proposal