Name: Xylanibacillus composti K13
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158389

Type strain:

Species: Xylanibacillus composti

Strain Designation: K13

Culture col. no.: DSM 29793, NCAIM B.02605

Strain history: <- A. Tóth, National Agricultural Res. and Innovation Center, Dept. of Appl and Environmental Microbiol., Budapest, Hungary; K13 <- J. Kukolya

NCBI tax ID(s): 1572762 (species)

SI-ID 405271

DSM 29793

Special Collections

Section

When using BacDive for research please cite our paper

Xylanibacillus composti K13 is a spore-forming, thermophilic, Gram-positive bacterium that forms irregular colonies and was isolated from manure compost.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Xylanibacillus*
	Species	**Xylanibacillus composti**
	Full Scientific Name (LPSN)	Xylanibacillus composti Kukolya et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65432]	Gram stain	positive

[Ref.: #65432]	Cell shape	rod-shaped

[Ref.: #65432]	Motility	yes
[Ref.: #125439]	Motility	yes Confidence in %91.7

[Ref.: #65432]	Flagellum arrangement	polar

[Ref.: #65432]	Cell length	2-3 µm

[Ref.: #65432]	Cell width	0.5-0.8 µm

[Ref.: #65432]	Colony size	1-2 mm
[Ref.: #65432]	Colony color	pale brownish
[Ref.: #65432]	Colony shape	irregular

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65065]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #65065]

Culture medium growth

[Ref.: #65065]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65065]

Culture medium composition

expand / minimize

[Ref.: #65432]

Culture medium

xylan-containing agar

[Ref.: #65432]

Culture medium growth

[Ref.: #65432]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #65432]

Culture medium growth

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Culture medium

Luria-Betrani agar

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Culture medium growth

		Temperature
[Ref.: #65065]	growth	45 °C
[Ref.: #65432]	growth	30-50 °C
[Ref.: #65432]	optimum	35-40 °C

	pH	Kind of pH		pH
[Ref.: #65432]			optimum	10
[Ref.: #65432]			growth	7-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65432]	Spore description	spherical and terminal endospore is formed in swollen sporangia
[Ref.: #65432]	Type of spore	endospore
[Ref.: #65432]	Ability of spore formation	yes
[Ref.: #125439]	Ability of spore formation	yes Confidence in %95.6
[Ref.: #125438]	Ability of spore formation	yes Confidence in %93.652

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65432]		NaCl		growth	0.5-2	%(w/v)
[Ref.: #65432]		NaCl		optimum	1	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65432]	casein	+	hydrolysis
[Ref.: #65432]	esculin ChEBI	+	assimilation
[Ref.: #65432]	glycerol ChEBI	+	assimilation
[Ref.: #65432]	maltose ChEBI	+	assimilation
[Ref.: #65432]	potassium 5-dehydro-D-gluconate	+	assimilation

	Enzyme	Enzyme activity	EC number
[Ref.: #65432]	beta-galactosidase	+	3.2.1.23
[Ref.: #65432]	catalase	-	1.11.1.6
[Ref.: #65432]	cytochrome oxidase	-	1.9.3.1
[Ref.: #65432]	esterase	+
[Ref.: #65432]	esterase Lipase (C 8)	+
[Ref.: #65432]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65432]	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65432]

Fatty acid	Percentage
C15:0 anteiso	34.4
isoC16:0	17.3
C16:0	10
C15:0 iso	9.8
C17:0 anteiso	9.5
isoC17:0	7.8
C15:0	2.7
C16:1ω11c	1.9
isoC14:0	1.9
C14:0	1.5
C17:0	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65065]	Sample type/isolated from	manure compost
[Ref.: #65065]	Country	Hungary
[Ref.: #65065]	Country ISO 3 Code	HUN
[Ref.: #65065]	Continent	Europe

[Ref.: #65432]	Sample type/isolated from	a hot region of manure compost
[Ref.: #65432]	Country	Hungary
[Ref.: #65432]	Country ISO 3 Code	HUN
[Ref.: #65432]	Continent	Europe
[Ref.: #65432]	Enrichment culture	xylan-containing agar
[Ref.: #65432]	Enrichment culture composition	1 g NaNO 3 ; 1 g K 2 HPO 4 ; 3 g NaCl; 0.01 g MnSO 4 ; 0.5 g MgCl 2 ;0.5 g yeast extract; 0.5 g peptone; 3 g xylan; 25 g gar; 1 l distilled water
[Ref.: #65432]	Enrichment culture duration	3 days
[Ref.: #65432]	Enrichment culture temperature	45 ̊C
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Engineered	#Waste	#Solid waste

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65432]	Xylanibacillus composti strain K13 sequence	KX298908		GenBank ENA
[Ref.: #65432]	Xylanibacillus composti strain K13 sequence	KX298909		GenBank ENA
[Ref.: #65065]	Xylanibacillus composti strain K13 sequence	KX298907	1577	GenBank ENA	1572762 tax ID
[Ref.: #65432]	Xylanibacillus composti strain K13 sequence	KX298897		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xylanibacillus composti K13	GCA_018403685	contig	GenBank ENA	1572762 tax ID	*
[Ref.: #66792]	Xylanibacillus composti strain K13	1572762.3	wgs	PATRIC	1572762 tax ID	*

[Ref.: #65432]

GC-content

52.3 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Xylanibacillus composti strain K13 PATRIC: 1572762.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	66.955	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	90.571	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	93.652	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	64.534	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	84.457	no
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	81.373	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Xylanibacillus composti K13 NCBI: GCA_018403685
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	95.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	91.7
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	variable	86.8
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	89

Availability in culture collections External links

[Ref.: #65065]

Culture collection no.

DSM 29793, NCAIM B.02605

[Ref.: #111193]

SI-ID 405271

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Xylanibacillus composti gen. nov., sp. nov., isolated from compost.	Kukolya J, Bata-Vidacs I, Luzics S, Toth E, Keki Z, Schumann P, Tancsics A, Nagy I, Olasz F, Toth A	Int J Syst Evol Microbiol	10.1099/ijsem.0.002523	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65065

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29793

#65432

József Kukolya, Ildikó Bata-Vidács, Szabina Luzics, Erika Tóth, Zsuzsa Kéki, Peter Schumann, András Táncsics, István Nagy, Ferenc Olasz, Ákos Tóth: Xylanibacillus composti gen. nov., sp. nov., isolated from compost. IJSEM 68: 698 - 702 2018 ( DOI 10.1099/ijsem.0.002523 , PubMed 29458465 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111193

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405271.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Xylanibacillus composti strain K13

Xylanibacillus composti K13

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