Name: Microbacterium album DSM 104474
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158383

Type strain:

Species: Microbacterium album

Culture col. no.: DSM 104474, CGMCC 1.15794, KCTC 39990, SYSU D8007

Strain history: <- Wael Nabil Hozzein, King Saud Univ.

NCBI tax ID(s): 2053191 (species)

SI-ID 397310

DSM 104474

Section

Microbacterium album DSM 104474 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from desert.

colony-forming
Gram-positive
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Microbacterium*
	Species	**Microbacterium album**
	Full Scientific Name (LPSN)	Microbacterium album Yang et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65299]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #65299]	Cell length	0.7-0.9 µm

[Ref.: #65299]	Cell width	0.4-0.5 µm

[Ref.: #65299]	Cell shape	rod-shaped

[Ref.: #65299]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.48

[Ref.: #65299]	Colony color	white
[Ref.: #65299]	Colony shape	circular
[Ref.: #65299]	Incubation period	5 days
[Ref.: #65299]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65059]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #65059]

Culture medium growth

[Ref.: #65059]

Culture medium link

Medium recipe at MediaDive

[Ref.: #65059]

Culture medium composition

expand / minimize

[Ref.: #65299]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #65299]

Culture medium growth

		Temperature
[Ref.: #65059]	growth	28 °C
[Ref.: #65299]	growth	4-45 °C
[Ref.: #65299]	optimum	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #65059]	Temperature range	mesophilic
[Ref.: #65299]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65299]			optimum	7
[Ref.: #65299]			growth	6-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65299]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #65299]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.811

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65299]		NaCl		growth	0-8	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65299]	4-hydroxyphenylacetic acid ChEBI	+	assimilation
[Ref.: #65299]	acetate ChEBI	+	assimilation
[Ref.: #65299]	acetoacetate ChEBI	+	assimilation
[Ref.: #65299]	adipate ChEBI	-	assimilation
[Ref.: #65299]	alpha-D-glucose ChEBI	+	assimilation
[Ref.: #65299]	arabinose ChEBI	-	assimilation
[Ref.: #65299]	cellulose ChEBI	-	hydrolysis
[Ref.: #65299]	D-fructose ChEBI	+	assimilation
[Ref.: #65299]	D-glucuronate ChEBI	+	assimilation
[Ref.: #65299]	D-mannitol ChEBI	+	assimilation
[Ref.: #65299]	decanoate ChEBI	-	assimilation
[Ref.: #65299]	dextrin ChEBI	+	assimilation
[Ref.: #65299]	esculin ChEBI	-	hydrolysis
[Ref.: #65299]	gelatin ChEBI	-	hydrolysis
[Ref.: #65299]	gluconate ChEBI	+	assimilation
[Ref.: #65299]	glucose ChEBI	-	builds acid from
[Ref.: #65299]	glucose ChEBI	+	assimilation
[Ref.: #65299]	indole ChEBI	+	assimilation
[Ref.: #65299]	inosine ChEBI	+	assimilation
[Ref.: #65299]	L-alanine ChEBI	+	assimilation
[Ref.: #65299]	L-glutamate ChEBI	+	assimilation
[Ref.: #65299]	malate ChEBI	-	assimilation
[Ref.: #65299]	maltose ChEBI	-	assimilation
[Ref.: #65299]	maltose ChEBI	+	assimilation
[Ref.: #65299]	mannitol ChEBI	+	assimilation
[Ref.: #65299]	mannose ChEBI	-	assimilation
[Ref.: #65299]	milk	-	assimilation
[Ref.: #65299]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #65299]	nitrate ChEBI	+	reduction
[Ref.: #65299]	sodium citrate ChEBI	-	assimilation
[Ref.: #65299]	starch ChEBI	-	hydrolysis
[Ref.: #65299]	trehalose ChEBI	+	assimilation
[Ref.: #65299]	turanose ChEBI	+	assimilation
[Ref.: #65299]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65299]	tween 40 ChEBI	+	assimilation
[Ref.: #65299]	tween 40 ChEBI	+	hydrolysis
[Ref.: #65299]	tween 60 ChEBI	-	hydrolysis
[Ref.: #65299]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65299]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65299]		hydrogen sulfide ChEBI	no
[Ref.: #65299]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65299]	acid phosphatase	+	3.1.3.2
[Ref.: #65299]	alkaline phosphatase	-	3.1.3.1
[Ref.: #65299]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #65299]	alpha-galactosidase	-	3.2.1.22
[Ref.: #65299]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65299]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65299]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65299]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #65299]	beta-galactosidase	-	3.2.1.23
[Ref.: #65299]	beta-glucosidase	-	3.2.1.21
[Ref.: #65299]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65299]	catalase	+	1.11.1.6
[Ref.: #65299]	cystine arylamidase	-	3.4.11.3
[Ref.: #65299]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65299]	esterase (C 4)	+
[Ref.: #65299]	esterase Lipase (C 8)	+
[Ref.: #65299]	leucine arylamidase	+	3.4.11.1
[Ref.: #65299]	lipase (C 14)	-
[Ref.: #65299]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #65299]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #65299]	trypsin	-	3.4.21.4
[Ref.: #65299]	urease	-	3.5.1.5
[Ref.: #65299]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65299]

Fatty acid	Percentage
C15:0 anteiso	47.8
C17:0 anteiso	32.6
C16:0 iso	12
C15:0 iso	1.7
C16:0	1.6
C18:1ω7c and/or C18:1ω6c	1
C14:0 iso	0.7
C17:0 iso	0.5
C15:1 anteiso A	0.4
C18:0	0.3
C14:0 2OH	0.2
C15:1ω5c	0.2
C17:0	0.2
C14:0	0.2
C18:3ω6,9,12c	0.1
C10:0 3OH	0.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65059]	Sample type/isolated from	desert
[Ref.: #65059]	Geographic location (country and/or sea, region)	Riyadh
[Ref.: #65059]	Country	Saudi Arabia
[Ref.: #65059]	Country ISO 3 Code	SAU
[Ref.: #65059]	Continent	Asia

[Ref.: #65299]	Sample type/isolated from	desert soil sample
[Ref.: #65299]	Geographic location (country and/or sea, region)	arid desert in the Al-Jouf region
[Ref.: #65299]	Country	Saudi Arabia
[Ref.: #65299]	Country ISO 3 Code	SAU
[Ref.: #65299]	Continent	Asia
[Ref.: #65299]	Enrichment culture	R2A
[Ref.: #65299]	Enrichment culture composition	pH 7
[Ref.: #65299]	Enrichment culture duration	5 days
[Ref.: #65299]	Enrichment culture temperature	28 ̊C

[Ref.: #67771]	Sample type/isolated from	From desert
[Ref.: #67771]	Geographic location (country and/or sea, region)	Riyadh
[Ref.: #67771]	Country	Saudi Arabia
[Ref.: #67771]	Country ISO 3 Code	SAU
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MF399039 (>99% sequence identity) for Microbacterium lacusdiani from Microbeatlas

Aquatic Samples	86
Soil Samples	25
Animal Samples	70
Plant Samples	42
Total Samples	223

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #65059]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65059]	Microbacterium album strain SYSU D8007 16S ribosomal RNA gene, partial sequence	MF399039	1470	ENA	2053191 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microbacterium album CGMCC 1.15794	GCA_014643695	scaffold	GenBank	2053191 tax ID	*
[Ref.: #66792]	Microbacterium album strain CGMCC 1.15794	2053191.3	wgs	PATRIC	2053191 tax ID	*

[Ref.: #65059]	GC-content	72.2 mol%
[Ref.: #65299]	GC-content	72.2 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microbacterium album CGMCC 1.15794 NCBI: GCA_014643695.1
[Ref.: #69481]	spore-forming	no	68	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microbacterium album CGMCC 1.15794 NCBI: GCA_014643695.1
[Ref.: #69480]	flagellated	no	97.187	yes
[Ref.: #69480]	gram-positive	yes	93.523	no
[Ref.: #69480]	anaerobic	no	99.345	no
[Ref.: #69480]	aerobic	yes	93.198	yes
[Ref.: #69480]	halophile	no	72.358	no
[Ref.: #69480]	spore-forming	no	92.985	yes
[Ref.: #69480]	glucose-util	yes	82.601	yes
[Ref.: #69480]	thermophile	no	97.551	yes
[Ref.: #69480]	motile	no	91.083	yes
[Ref.: #69480]	glucose-ferment	no	88.329	no

Availability in culture collections External links

[Ref.: #65059]

Culture collection no.

DSM 104474, CGMCC 1.15794, KCTC 39990, SYSU D8007

[Ref.: #111187]

SI-ID 397310

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microbacterium album sp. nov. and Microbacterium deserti sp. nov., two halotolerant actinobacteria isolated from desert soil.	Yang ZW, Salam N, Mohany M, Chinnathambi A, Alharbi SA, Xiao M, Hozzein WN, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002485	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65059

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104474

#65299

Zi-Wen Yang, Nimaichand Salam, Mohamed Mohany, Arunachalam Chinnathambi, Sulaiman Ali Alharbi, Min Xiao, Wael N. Hozzein, Wen-Jun Li: Microbacterium album sp. nov. and Microbacterium deserti sp. nov., two halotolerant actinobacteria isolated from desert soil. IJSEM 68: 217 - 222 2018 ( DOI 10.1099/ijsem.0.002485 , PubMed 29125456 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111187

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397310.1 )

* These data were automatically processed and therefore are not curated

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Microbacterium album CGMCC 1.15794

Microbacterium album CGMCC 1.15794

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