Alteribacter populi (DSM 104632, CCTCC AB 2016257, FJAT-45347)

Name: Alteribacter populi (DSM 104632, CCTCC AB 2016257, FJAT-45347)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158381

Type strain

Strain Designation FJAT-45347

Culture col. no. DSM 104632 CCTCC AB 2016257 FJAT-45347

NCBI tax ID(s) 2011011

Special Collections DSMZ Literature strains

History DSMZ <- X. Wang; Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-45347<-X. Wang

Links

Alteribacter populi FJAT-45347 is an aerobe, spore-forming, Gram-negative bacterium that forms circular colonies and was isolated from soil, Taklamakan desert.

spore-forming Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403004

DSM 104632

@ref 20215

Last LPSN update 2026-05-29 08:43:57

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Alteribacter

Species Alteribacter populi

Full scientific name Alteribacter populi (Liu et al. 2018) Gupta et al. 2020

Synonyms (1)

Bacillus populi

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
65293	negative	2.3-3.4 µm	0.6-0.8 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65293	3.4 mm	yellow	circular	2 days	Horikoshi I medium

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65057	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
65293	Horikoshi I medium

Culture temp

@ref	Growth	Type	Temperature (°C)
65057	positive	growth	30
65293	positive	growth	15-35
65293	positive	optimum	25

Culture pH

@ref	Ability	Type	PH	PH range
65293	positive	optimum	8
65293	positive	growth	7.5-12	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
65293	aerobe
125439	facultative anaerobe	94.697

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
65293	Ellipsoidal endospores are observed at central or terminal positions	endospore
125438				94.356

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65293	NaCl	positive	growth	0-20 %
65293	NaCl	positive	optimum	8 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65293	27613 ChEBI	amygdalin	+	builds acid from
65293	18305 ChEBI	arbutin	+	builds acid from
65293	17057 ChEBI	cellobiose	+	builds acid from
65293	16947 ChEBI	citrate	+	assimilation
65293	28757 ChEBI	fructose	+	builds acid from
65293	5291 ChEBI	gelatin	+	assimilation
65293	17234 ChEBI	glucose	-	fermentation
65293	30849 ChEBI	L-arabinose	+	builds acid from
65293	37657 ChEBI	methyl D-glucoside	+	builds acid from
65293	17632 ChEBI	nitrate	-	reduction
65293	17814 ChEBI	salicin	+	builds acid from
65293	30911 ChEBI	sorbitol	+	builds acid from
65293	28017 ChEBI	starch	-	hydrolysis
65293	27082 ChEBI	trehalose	+	builds acid from
65293	53424 ChEBI	tween 20	-	hydrolysis
65293	53423 ChEBI	tween 40	-	hydrolysis
65293	53425 ChEBI	tween 60	-	hydrolysis
65293	53426 ChEBI	tween 80	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite
65293	15688 ChEBI	acetoin
65293	16136 ChEBI	hydrogen sulfide
65293	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
65293	15688 ChEBI	acetoin	+
65293	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
65293	acid phosphatase	-	3.1.3.2
65293	alkaline phosphatase	+	3.1.3.1
65293	alpha-chymotrypsin	-	3.4.21.1
65293	alpha-fucosidase	-	3.2.1.51
65293	alpha-galactosidase	-	3.2.1.22
65293	alpha-glucosidase	-	3.2.1.20
65293	alpha-mannosidase	-	3.2.1.24
65293	arginine dihydrolase	+	3.5.3.6
65293	beta-galactosidase	-	3.2.1.23
65293	beta-glucosidase	-	3.2.1.21
65293	beta-glucuronidase	-	3.2.1.31
65293	catalase	+	1.11.1.6
65293	cystine arylamidase	-	3.4.11.3
65293	cytochrome oxidase	-	1.9.3.1
65293	esterase (C 4)	+
65293	esterase Lipase (C 8)	+
65293	leucine arylamidase	-	3.4.11.1
65293	lipase (C 14)	-
65293	lysine decarboxylase	+	4.1.1.18
65293	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65293	naphthol-AS-BI-phosphohydrolase	+
65293	ornithine decarboxylase	-	4.1.1.17
65293	trypsin	-	3.4.21.4
65293	valine arylamidase	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Plant	#Rhizosphere
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
65057	soil, Taklamakan desert	Xinjiang Province	China	CHN	Asia
65293	Populus euphratica rhizosphere soil	Taklamakan desert in Xin-jiang	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
65057	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM235276v2 assembly for Alteribacter populi FJAT-45347	scaffold	GCA_002352765	2011011.3	8063361227	2011011	76.69

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65057	Alteribacter populi strain FJAT-45347 16S ribosomal RNA gene, partial sequence	KY612313	1436		2011011

GC content

@ref	GC-content (mol%)	Method
65293	40.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM235276v2 assembly for Alteribacter populi FJAT-45347
NCBI: GCA_002352765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.70	no
125439	motility	BacteriaNetⓘ	yes	48.03	no
125439	gram_stain	BacteriaNetⓘ	positive	55.94	no
125439	spore_formation	BacteriaNetⓘ	yes	46.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alteribacter populi FJAT-45347
NCBI: GCA_002352765.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	79.50	no
125438	anaerobic	anaerobicⓘ	no	95.99	yes
125438	aerobic	aerobicⓘ	yes	81.24	yes
125438	spore-forming	spore-formingⓘ	yes	94.36	no
125438	thermophilic	thermophileⓘ	no	92.81	yes
125438	flagellated	motile2+ⓘ	yes	84.81	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal to transfer Bacillus lacisalsi Dong et al. 2021 to the genus Alteribacter as Alteribacter lacisalsi comb. nov.	Narsing Rao MP, Wang H, Banerjee A, Xiao M, Li X, Kang YQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005502	2022
Phylogeny	Alteribacter keqinensis sp. nov., a moderately halophilic bacterium isolated from a soda lake.	Liu J, Zhang X, Cao H, Guo L, Zhao B, Zhang X, Wang Y, Wang H	Int J Syst Evol Microbiol	10.1099/ijsem.0.005351	2022
Phylogeny	Bacillus natronophilus sp. nov., an alkaliphilic bacterium isolated from a soda lake.	Menes RJ, Machin EV, Iriarte A, Langleib M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003792	2020
Phylogeny	Bacillus lacisalsi sp. nov., a moderately haloalkaliphilic bacterium isolated from a saline-alkaline lake.	Dong L, Wang S, Cao H, Zhao B, Zhang X, Wu K, Wang H	Antonie Van Leeuwenhoek	10.1007/s10482-019-01322-3	2019
Phylogeny	Thalassorhabdus alkalitolerans gen. nov., sp. nov., a novel Bacillaceae member isolated from marine sediment.	Sultanpuram VR, Mothe T	Int J Syst Evol Microbiol	10.1099/ijsem.0.002931	2018
Phylogeny	Bacillus populi sp. nov. isolated from Populus euphratica rhizosphere soil of the Taklamakan desert.	Liu B, Liu GH, Wang XY, Wang JP, Zhu YJ, Zhang HF, Sengonca C	Int J Syst Evol Microbiol	10.1099/ijsem.0.002476	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65057	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104632
#65293	Bo Liu, Guo-Hong Liu, Xiao-Ying Wang, Jie-Ping Wang, Yu-Jing Zhu, Hai-Feng Zhang, Cetin Sengonca: Bacillus populi sp. nov. isolated from Populus euphratica rhizosphere soil of the Taklamakan desert. IJSEM 68: 155 - 159 2018 ( DOI 10.1099/ijsem.0.002476 , PubMed 29111966 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alteribacter populi (DSM 104632, CCTCC AB 2016257, FJAT-45347)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002352765

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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