Conservatibacter flavescens (DSM 105479, CCUG 24852, 7.4)

Name: Conservatibacter flavescens (DSM 105479, CCUG 24852, 7.4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158349

Type strain

Strain Designation 7.4

Culture col. no. DSM 105479 CCUG 24852 7.4 HIM 794-7

NCBI tax ID(s) 28161

Special Collections DSMZ CCUG Literature strains

History DSMZ <- H. Christensen, Fac. Life Sci., Univ. Copenhagen, Frederiksberg, Denmark; 7.4 <- M. Bisgaard, Royal Veterinary and Agricultural University, Copenhagen, Denmark

Links

Conservatibacter flavescens 7.4 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from guinea pig.

Gram-negative rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 51960

DSM 105479,CCUG 24852,CCUG 36350

@ref 20215

Last LPSN update 2026-05-29 08:43:56

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pasteurellales

Family Pasteurellaceae

Genus Conservatibacter

Species Conservatibacter flavescens

Full scientific name Conservatibacter flavescens Adhikary et al. 2018

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
65429	negative	rod-shaped
125438			90.988
125438	negative		98.104

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
65429	1.0-1.5 mm	yellow	circular	1 day	blood agar

Multimedia

@ref:	65025
multimedia content:	DSM_105479.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_105479.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
65025	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
65429	blood agar

Culture temp

@ref	Growth	Type	Temperature (°C)
65025	positive	growth	37

Physiology and metabolism

Oxygen tolerance

65429

Oxygen toleranceaerobe

Observation

65429

Observationthe type strain contains predominantly 1,3-diaminopropane and minor amounts of spermidine and spermine and only traces of putrescine and cadaverine

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65429		(+)-D-glycogen	-	builds acid from
65429	48095 ChEBI	(-)-D-fructose	+	builds acid from
65429	27613 ChEBI	amygdalin	-	builds acid from
65429	22605 ChEBI	arabinitol	+	builds acid from
65429	18305 ChEBI	arbutin	-	builds acid from
65429	71422 ChEBI	beta-gentiobiose	-	builds acid from
65429	17057 ChEBI	cellobiose	-	builds acid from
65429	17108 ChEBI	D-arabinose	+	builds acid from
65429	28847 ChEBI	D-fucose	-	builds acid from
65429	12936 ChEBI	D-galactose	+	builds acid from
65429	17634 ChEBI	D-glucose	+	builds acid from
65429	16899 ChEBI	D-mannitol	+	builds acid from
65429	16024 ChEBI	D-mannose	+	builds acid from
65429	16988 ChEBI	D-ribose	+	builds acid from
65429	17924 ChEBI	D-sorbitol	-	builds acid from
65429	65327 ChEBI	D-xylose	+	builds acid from
65429	17113 ChEBI	erythritol	-	builds acid from
65429	4853 ChEBI	esculin	-	hydrolysis
65429	16813 ChEBI	galactitol	+	builds acid from
65429	495056 ChEBI	gamma-cyclodextrin	-	builds acid from
65429	17234 ChEBI	glucose	+	fermentation
65429	17754 ChEBI	glycerol	+	builds acid from
65429	35581 ChEBI	indole	+	assimilation
65429	15443 ChEBI	inulin	-	builds acid from
65429	16087 ChEBI	isocitrate	-	assimilation
65429	30849 ChEBI	L-arabinose	-	builds acid from
65429	18287 ChEBI	L-fucose	+	builds acid from
65429	62345 ChEBI	L-rhamnose	+	builds acid from
65429	17266 ChEBI	L-sorbose	-	builds acid from
65429	65328 ChEBI	L-xylose	-	builds acid from
65429	17716 ChEBI	lactose	-	builds acid from
65429	15792 ChEBI	malonate	-	builds base from
65429	17306 ChEBI	maltose	-	builds acid from
65429	6731 ChEBI	melezitose	-	builds acid from
65429	28053 ChEBI	melibiose	+	builds acid from
65429	16634 ChEBI	raffinose	+	builds acid from
65429	15963 ChEBI	ribitol	-	builds acid from
65429	17814 ChEBI	salicin	-	builds acid from
65429	17992 ChEBI	sucrose	+	builds acid from
65429	27082 ChEBI	trehalose	+	builds acid from
65429	32528 ChEBI	turanose	-	builds acid from
65429	53424 ChEBI	tween 20	-	growth
65429	53426 ChEBI	tween 80	-	growth
65429	17151 ChEBI	xylitol	-	builds acid from

Enzymes

@ref	Value	Activity	Ec
65429	alanine aminopeptidase	+
65429	alkaline phosphatase	-	3.1.3.1
65429	alpha-fucosidase	-	3.2.1.51
65429	alpha-galactosidase	+	3.2.1.22
65429	alpha-glucosidase	+	3.2.1.20
65429	alpha-mannosidase	-	3.2.1.24
65429	arginine dihydrolase	-	3.5.3.6
65429	beta-glucosidase	-	3.2.1.21
65429	beta-glucuronidase	-	3.2.1.31
65429	beta-xylosidase	-
65429	catalase	+/-	1.11.1.6
65429	cytochrome oxidase	+	1.9.3.1
65429	gelatinase	-
65429	lysine decarboxylase	-	4.1.1.18
65429	ornithine decarboxylase	+	4.1.1.17
65429	phenylalanine deaminase	-	4.3.1.5
65429	urease	-	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	acetate fermentation	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	glycine betaine biosynthesis	100	5 of 5
66794	vitamin K metabolism	100	5 of 5
66794	ribulose monophosphate pathway	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	pentose phosphate pathway	100	11 of 11
66794	sulfoquinovose degradation	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	ppGpp biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ubiquinone biosynthesis	100	7 of 7
66794	suberin monomers biosynthesis	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	adipate degradation	100	2 of 2
66794	palmitate biosynthesis	95.45	21 of 22
66794	4-hydroxyphenylacetate degradation	90	9 of 10
66794	starch degradation	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	degradation of sugar alcohols	87.5	14 of 16
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	vitamin B1 metabolism	84.62	11 of 13
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	Entner Doudoroff pathway	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	gallate degradation	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	CMP-KDO biosynthesis	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	isoleucine metabolism	75	6 of 8
66794	purine metabolism	74.47	70 of 94
66794	flavin biosynthesis	73.33	11 of 15
66794	pyrimidine metabolism	73.33	33 of 45
66794	vitamin B6 metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	degradation of pentoses	71.43	20 of 28
66794	myo-inositol biosynthesis	70	7 of 10
66794	leucine metabolism	69.23	9 of 13
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	serine metabolism	66.67	6 of 9
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	degradation of hexoses	66.67	12 of 18
66794	non-pathway related	65.79	25 of 38
66794	tryptophan metabolism	65.79	25 of 38
66794	glycolysis	64.71	11 of 17
66794	alanine metabolism	62.07	18 of 29
66794	methionine metabolism	61.54	16 of 26
66794	lipoate biosynthesis	60	3 of 5
66794	degradation of sugar acids	60	15 of 25
66794	lipid metabolism	58.06	18 of 31
66794	glutamate and glutamine metabolism	57.14	16 of 28
66794	glutathione metabolism	57.14	8 of 14
66794	citric acid cycle	57.14	8 of 14
66794	oxidative phosphorylation	57.14	52 of 91
66794	propanol degradation	57.14	4 of 7
66794	heme metabolism	57.14	8 of 14
66794	NAD metabolism	55.56	10 of 18
66794	proline metabolism	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	histidine metabolism	51.72	15 of 29
66794	kanosamine biosynthesis II	50	1 of 2
66794	biotin biosynthesis	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	lysine metabolism	50	21 of 42
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	ascorbate metabolism	50	11 of 22
66794	propionate fermentation	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	arginine metabolism	45.83	11 of 24
66794	d-xylose degradation	45.45	5 of 11
66794	metabolism of disaccharids	45.45	5 of 11
66794	phenol degradation	45	9 of 20
66794	d-mannose degradation	44.44	4 of 9
66794	tyrosine metabolism	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	3-phenylpropionate degradation	40	6 of 15
66794	glycine metabolism	40	4 of 10
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	sulfate reduction	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	arachidonic acid metabolism	27.78	5 of 18
66794	toluene degradation	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	chlorophyll metabolism	22.22	4 of 18
66794	allantoin degradation	22.22	2 of 9
66794	nitrate assimilation	22.22	2 of 9
66794	polyamine pathway	21.74	5 of 23

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Mouth
#Host	#Mammals	#Rodentia (Other)
#Host Body-Site	#Oral cavity and airways	#Throat

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
65025	guinea pig	Denmark	DNK	Europe
65429	pharynx of guinea pig

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM279542v1 assembly for Conservatibacter flavescens 7.4	contig	GCA_002795425	28161.3	2788500100	28161	69.88

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
65025	Conservatibacter flavescens strain CCUG 24852 16S ribosomal RNA gene, partial sequence	L06082	1486		28161
124043	Conservatibacter flavescens strain CCUG 24852 16S ribosomal RNA gene, partial sequence.	AY362904	1362		28161

GC content

@ref	GC-content (mol%)	Method
65429	39.5	sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Conservatibacter flavescens 7.4
NCBI: GCA_002795425.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.10	yes
125438	anaerobic	anaerobicⓘ	no	92.90	yes
125438	aerobic	aerobicⓘ	no	70.81	no
125438	spore-forming	spore-formingⓘ	no	88.66	no
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	no	90.99	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Bisgaard taxon 5 as Caviibacterium pharyngocola gen. nov., sp. nov. and Bisgaard taxon 7 as Conservatibacter flavescens gen. nov., sp. nov.	Adhikary S, Bisgaard M, Nicklas W, Christensen H	Int J Syst Evol Microbiol	10.1099/ijsem.0.002558	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#65025	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105479
#65429	Sadhana Adhikary, Magne Bisgaard, Werner Nicklas, Henrik Christensen: Reclassification of Bisgaard taxon 5 as Caviibacterium pharyngocola gen. nov., sp. nov. and Bisgaard taxon 7 as Conservatibacter flavescens gen. nov., sp. nov.. IJSEM 68: 643 - 650 2018 ( DOI 10.1099/ijsem.0.002558 , PubMed 29303698 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Conservatibacter flavescens (DSM 105479, CCUG 24852, 7.4)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Metabolite utilization

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002795425

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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