Name: Conservatibacter flavescens 7.4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158349

Type strain:

Species: Conservatibacter flavescens

Strain Designation: 7.4

Culture col. no.: DSM 105479, CCUG 24852, HIM 794-7

Strain history: <- H. Christensen, Fac. Life Sci., Univ. Copenhagen, Frederiksberg, Denmark; 7.4 <- M. Bisgaard, Royal Veterinary and Agricultural University, Copenhagen, Denmark

NCBI tax ID(s): 28161 (species)

SI-ID 51960

CCUG 24852, CCUG 36350

Section

Conservatibacter flavescens 7.4 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from guinea pig.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pasteurellales*
	Family	*Pasteurellaceae*
	Genus	*Conservatibacter*
	Species	**Conservatibacter flavescens**
	Full Scientific Name (LPSN)	Conservatibacter flavescens Adhikary et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #65429]	Gram stain	negative

[Ref.: #65429]	Cell shape	rod-shaped

[Ref.: #65429]	Motility	no

[Ref.: #65429]	Colony size	1.0-1.5 mm
[Ref.: #65429]	Colony color	yellow
[Ref.: #65429]	Colony shape	circular
[Ref.: #65429]	Incubation period	1 day
[Ref.: #65429]	Cultivation medium used	blood agar

Multimedia content

[Ref.: #65025]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #65025]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #65025]

Culture medium composition

expand / minimize

[Ref.: #65429]

Culture medium

blood agar

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #65025]			growth	37 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65429]

Oxygen tolerance

aerobe

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Observation

the type strain contains predominantly 1,3-diaminopropane and minor amounts of spermidine and spermine and only traces of putrescine and cadaverine

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65429]	(+)-D-glycogen	-	builds acid from
[Ref.: #65429]	(-)-D-fructose ChEBI	+	builds acid from
[Ref.: #65429]	amygdalin ChEBI	-	builds acid from
[Ref.: #65429]	arabinitol ChEBI	+	builds acid from
[Ref.: #65429]	arbutin ChEBI	-	builds acid from
[Ref.: #65429]	beta-gentiobiose ChEBI	-	builds acid from
[Ref.: #65429]	cellobiose ChEBI	-	builds acid from
[Ref.: #65429]	D-arabinose ChEBI	+	builds acid from
[Ref.: #65429]	D-fucose ChEBI	-	builds acid from
[Ref.: #65429]	D-galactose ChEBI	+	builds acid from
[Ref.: #65429]	D-glucose ChEBI	+	builds acid from
[Ref.: #65429]	D-mannitol ChEBI	+	builds acid from
[Ref.: #65429]	D-mannose ChEBI	+	builds acid from
[Ref.: #65429]	D-ribose ChEBI	+	builds acid from
[Ref.: #65429]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65429]	D-xylose ChEBI	+	builds acid from
[Ref.: #65429]	erythritol ChEBI	-	builds acid from
[Ref.: #65429]	esculin ChEBI	-	hydrolysis
[Ref.: #65429]	galactitol ChEBI	+	builds acid from
[Ref.: #65429]	gamma-cyclodextrin ChEBI	-	builds acid from
[Ref.: #65429]	glucose ChEBI	+	fermentation
[Ref.: #65429]	glycerol ChEBI	+	builds acid from
[Ref.: #65429]	indole ChEBI	+	assimilation
[Ref.: #65429]	inulin ChEBI	-	builds acid from
[Ref.: #65429]	isocitrate ChEBI	-	assimilation
[Ref.: #65429]	L-arabinose ChEBI	-	builds acid from
[Ref.: #65429]	L-fucose ChEBI	+	builds acid from
[Ref.: #65429]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #65429]	L-sorbose ChEBI	-	builds acid from
[Ref.: #65429]	L-xylose ChEBI	-	builds acid from
[Ref.: #65429]	lactose ChEBI	-	builds acid from
[Ref.: #65429]	malonate ChEBI	-	builds base from
[Ref.: #65429]	maltose ChEBI	-	builds acid from
[Ref.: #65429]	melezitose ChEBI	-	builds acid from
[Ref.: #65429]	melibiose ChEBI	+	builds acid from
[Ref.: #65429]	raffinose ChEBI	+	builds acid from
[Ref.: #65429]	ribitol ChEBI	-	builds acid from
[Ref.: #65429]	salicin ChEBI	-	builds acid from
[Ref.: #65429]	sucrose ChEBI	+	builds acid from
[Ref.: #65429]	trehalose ChEBI	+	builds acid from
[Ref.: #65429]	turanose ChEBI	-	builds acid from
[Ref.: #65429]	tween 20 ChEBI	-	growth
[Ref.: #65429]	tween 80 ChEBI	-	growth
[Ref.: #65429]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #65429]	alanine aminopeptidase	+
[Ref.: #65429]	alkaline phosphatase	-	3.1.3.1
[Ref.: #65429]	alpha-fucosidase	-	3.2.1.51
[Ref.: #65429]	alpha-galactosidase	+	3.2.1.22
[Ref.: #65429]	alpha-glucosidase	+	3.2.1.20
[Ref.: #65429]	alpha-mannosidase	-	3.2.1.24
[Ref.: #65429]	arginine dihydrolase	-	3.5.3.6
[Ref.: #65429]	beta-glucosidase	-	3.2.1.21
[Ref.: #65429]	beta-glucuronidase	-	3.2.1.31
[Ref.: #65429]	beta-xylosidase	-
[Ref.: #65429]	catalase	+/-	1.11.1.6
[Ref.: #65429]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65429]	gelatinase	-
[Ref.: #65429]	lysine decarboxylase	-	4.1.1.18
[Ref.: #65429]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #65429]	phenylalanine deaminase	-	4.3.1.5
[Ref.: #65429]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	sulfoquinovose degradation	100	3 of 3
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	ubiquinone biosynthesis	100	7 of 7
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	4-hydroxyphenylacetate degradation	90	9 of 10
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	degradation of sugar alcohols	87.5	14 of 16
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	threonine metabolism	80	8 of 10
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	purine metabolism	74.47	70 of 94
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	pyrimidine metabolism	73.33	33 of 45
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	71.43	5 of 7
[Ref.: #66794]	degradation of pentoses	71.43	20 of 28
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	leucine metabolism	69.23	9 of 13
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	enterobactin biosynthesis	66.67	2 of 3
[Ref.: #66794]	serine metabolism	66.67	6 of 9
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	degradation of hexoses	66.67	12 of 18
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	tryptophan metabolism	65.79	25 of 38
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	alanine metabolism	62.07	18 of 29
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	degradation of sugar acids	60	15 of 25
[Ref.: #66794]	lipid metabolism	58.06	18 of 31
[Ref.: #66794]	glutamate and glutamine metabolism	57.14	16 of 28
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	citric acid cycle	57.14	8 of 14
[Ref.: #66794]	oxidative phosphorylation	57.14	52 of 91
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	heme metabolism	57.14	8 of 14
[Ref.: #66794]	NAD metabolism	55.56	10 of 18
[Ref.: #66794]	proline metabolism	54.55	6 of 11
[Ref.: #66794]	urea cycle	53.85	7 of 13
[Ref.: #66794]	isoprenoid biosynthesis	53.85	14 of 26
[Ref.: #66794]	histidine metabolism	51.72	15 of 29
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	ascorbate metabolism	50	11 of 22
[Ref.: #66794]	propionate fermentation	50	5 of 10
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	cysteine metabolism	50	9 of 18
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	arginine metabolism	45.83	11 of 24
[Ref.: #66794]	d-xylose degradation	45.45	5 of 11
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	phenol degradation	45	9 of 20
[Ref.: #66794]	d-mannose degradation	44.44	4 of 9
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	sulfate reduction	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	23.08	3 of 13
[Ref.: #66794]	chlorophyll metabolism	22.22	4 of 18
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
[Ref.: #66794]	nitrate assimilation	22.22	2 of 9
[Ref.: #66794]	polyamine pathway	21.74	5 of 23
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #65025]	Sample type/isolated from	guinea pig
[Ref.: #65025]	Country	Denmark
[Ref.: #65025]	Country ISO 3 Code	DNK
[Ref.: #65025]	Continent	Europe

[Ref.: #65429]	Sample type/isolated from	pharynx of guinea pig
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Oral cavity and airways	#Mouth
#Host	#Mammals	#Rodentia (Other)
#Host Body-Site	#Oral cavity and airways	#Throat

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65025]	Conservatibacter flavescens strain CCUG 24852 16S ribosomal RNA gene, partial sequence	L06082	1486	ENA	28161 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Conservatibacter flavescens 7.4	GCA_002795425	contig	GenBank	28161 tax ID	*

[Ref.: #65429]

GC-content

39.5 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Conservatibacter flavescens 7.4 NCBI: GCA_002795425.1
[Ref.: #69480]	flagellated	no	96.931	yes
[Ref.: #69480]	gram-positive	no	97.409	yes
[Ref.: #69480]	anaerobic	no	96.751	yes
[Ref.: #69480]	aerobic	no	75.99	yes
[Ref.: #69480]	halophile	yes	54.277	no
[Ref.: #69480]	spore-forming	no	98.777	no
[Ref.: #69480]	glucose-util	yes	57.523	no
[Ref.: #69480]	thermophile	no	98.819	no
[Ref.: #69480]	motile	no	90.561	yes
[Ref.: #69480]	glucose-ferment	no	52.61	no

Availability in culture collections External links

[Ref.: #65025]

Culture collection no.

DSM 105479, CCUG 24852, HIM 794-7

[Ref.: #111154]

SI-ID 51960

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Bisgaard taxon 5 as Caviibacterium pharyngocola gen. nov., sp. nov. and Bisgaard taxon 7 as Conservatibacter flavescens gen. nov., sp. nov.	Adhikary S, Bisgaard M, Nicklas W, Christensen H	Int J Syst Evol Microbiol	10.1099/ijsem.0.002558	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#65025

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105479

#65429

Sadhana Adhikary, Magne Bisgaard, Werner Nicklas, Henrik Christensen: Reclassification of Bisgaard taxon 5 as Caviibacterium pharyngocola gen. nov., sp. nov. and Bisgaard taxon 7 as Conservatibacter flavescens gen. nov., sp. nov.. IJSEM 68: 643 - 650 2018 ( DOI 10.1099/ijsem.0.002558 , PubMed 29303698 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#111154

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID51960.1 )

* These data were automatically processed and therefore are not curated

Change proposal

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