Name: Tritonibacter horizontis O3.65
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158322

Type strain:

Species: Tritonibacter horizontis

Strain Designation: O3.65

Culture col. no.: DSM 101689, LMG 29740

Strain history: <- H.-A. Giebel, Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg; O3.65 <- K. Grosser and H.-A. Giebel, Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg; O3.65

NCBI tax ID(s): 1768241 (species)

SI-ID 408172

DSM 101689

Special Collections

Section

When using BacDive for research please cite our paper

Tritonibacter horizontis O3.65 is an aerobe, chemoorganoheterotroph, mesophilic bacterium that forms circular colonies and was isolated from enrichment culture of surface seawater contaminated with weathered oil from the Deep Water Horizon oil spill.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
chemoorganoheterotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Tritonibacter*
	Species	**Tritonibacter horizontis**
	Full Scientific Name (LPSN)	Tritonibacter horizontis Klotz et al. 2018

Synonym

Epibacterium horizontis

Information on morphological and physiological properties Morphology

[Ref.: #65345]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %97.4

[Ref.: #65345]	Cell length	1.3-2.2 µm

[Ref.: #65345]	Cell width	0.6-1 µm

[Ref.: #65345]	Cell shape	rod-shaped

[Ref.: #65345]	Motility	yes

[Ref.: #65345]	Flagellum arrangement	monotrichous, polar

[Ref.: #65345]	Colony color	light beige
[Ref.: #65345]	Colony shape	circular
[Ref.: #65345]	Cultivation medium used	marine broth

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64998]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #64998]

Culture medium growth

[Ref.: #64998]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64998]

Culture medium composition

expand / minimize

[Ref.: #65345]

Culture medium

marine broth

[Ref.: #65345]

Culture medium growth

		Temperature
[Ref.: #64998]	growth	30 °C
[Ref.: #65345]	growth	4-45 °C
[Ref.: #65345]	optimum	30-35 °C

	pH	Kind of pH		pH
[Ref.: #65345]			optimum	7
[Ref.: #65345]			growth	5.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65345]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	aerobe Confidence in %92

[Ref.: #65345]

Nutrition type

chemoorganoheterotroph

[Ref.: #125439]

Ability of spore formation

no Confidence in %95.9

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65345]		NaCl		growth	0.5-10	%
[Ref.: #65345]		NaCl		optimum	3.5-4	%

[Ref.: #65345]

Observation

No growth was observed on oil and paraffin containing agar plates.

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65345]	(-)-D-fructose ChEBI	+	carbon source
[Ref.: #65345]	4-coumarate ChEBI	+	assimilation
[Ref.: #65345]	4-hydroxybenzoate ChEBI	+	assimilation
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #65345]	alanine ChEBI	+	assimilation
[Ref.: #65345]	arginine ChEBI	+	assimilation
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #65345]	asparagine ChEBI	+	assimilation
[Ref.: #65345]	aspartate ChEBI	+	assimilation
[Ref.: #65345]	benzoate ChEBI	-	assimilation
[Ref.: #65345]	biotin ChEBI	+	required for growth
[Ref.: #65345]	cellobiose ChEBI	+	carbon source
[Ref.: #65345]	cinnamate ChEBI	-	assimilation
[Ref.: #65345]	citrate ChEBI	+	assimilation
[Ref.: #65345]	cysteine ChEBI	-	assimilation
[Ref.: #65345]	D-galactose ChEBI	+	carbon source
[Ref.: #65345]	D-glucosamine ChEBI	+	carbon source
[Ref.: #65345]	D-glucose ChEBI	+	carbon source
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #65345]	D-mannitol ChEBI	+	carbon source
[Ref.: #65345]	D-mannose ChEBI	+	carbon source
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #65345]	D-ribose ChEBI	+	carbon source
[Ref.: #65345]	D-xylose ChEBI	+	carbon source
[Ref.: #65345]	decane ChEBI	+	assimilation
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #65345]	ferulate ChEBI	+	assimilation
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #65345]	glutamate ChEBI	+	assimilation
[Ref.: #65345]	glutamine ChEBI	-	assimilation
[Ref.: #65345]	glycerol ChEBI	+	assimilation
[Ref.: #65345]	glycine ChEBI	-	assimilation
[Ref.: #65345]	hexadecane ChEBI	+	assimilation
[Ref.: #65345]	histidine ChEBI	+	assimilation
[Ref.: #65345]	isoleucine ChEBI	+	assimilation
[Ref.: #65345]	L-arabinose ChEBI	+	carbon source
[Ref.: #65345]	L-fucose ChEBI	+	carbon source
[Ref.: #65345]	lactose ChEBI	-	carbon source
[Ref.: #65345]	leucine ChEBI	+	assimilation
[Ref.: #65345]	lysine ChEBI	-	assimilation
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #65345]	methionine ChEBI	-	assimilation
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #65345]	nitrite ChEBI	-	reduction
[Ref.: #65345]	nonane ChEBI	+	assimilation
[Ref.: #65345]	phenylalanine ChEBI	+	assimilation
[Ref.: #65345]	proline ChEBI	+	assimilation
[Ref.: #65345]	protocatechuate ChEBI	+	assimilation
[Ref.: #65345]	salicylate ChEBI	-	assimilation
[Ref.: #65345]	serine ChEBI	+	assimilation
[Ref.: #65345]	sodium acetate ChEBI	+	assimilation
[Ref.: #65345]	sodium pyruvate ChEBI	+	assimilation
[Ref.: #65345]	sodium(+)	+	required for growth
[Ref.: #65345]	starch ChEBI	-	carbon source
[Ref.: #65345]	sucrose ChEBI	+	carbon source
[Ref.: #65345]	threonine ChEBI	+	assimilation
[Ref.: #65345]	tryptophan ChEBI	+	assimilation
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #65345]	tyrosine ChEBI	+	assimilation
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #65345]	valine ChEBI	+	assimilation
[Ref.: #65345]	vanillate ChEBI	+	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #65345]	amylase	-
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #65345]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #65345]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65345]	gelatinase	-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #65345]	lipase (Tween 80)	-
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #64998]	28121	-	-	-	-	-	+	-	+	+/-	+/-	+	-	+	+	+	-	+	+	+	-	not determinedn.d.
[Ref.: #64998]	28122	-	-	-	-	-	+	-	+	+/-	+/-	+	-	+	+	+	-	+	+	+	-	not determinedn.d.
[Ref.: #64998]	28123	-	-	-	-	-	+	-	+	+	+	+	+/-	+	+	+	-	+	+	+	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #64998]	14788	-	+	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #64998]	14789	-	+	+/-	+/-	-	+	-	-	-	-	-	+/-	+/-	-	+	-	-	-	-	-
[Ref.: #64998]	14790	-	+	+/-	-	-	+	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	CMP-KDO biosynthesis	100	4 of 4
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	allantoin degradation	100	9 of 9
[Ref.: #66794]	octane oxidation	100	3 of 3
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	C4 and CAM-carbon fixation	100	8 of 8
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	4-hydroxymandelate degradation	100	9 of 9
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	lactate fermentation	100	4 of 4
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	NAD metabolism	94.44	17 of 18
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	lipid A biosynthesis	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	pyrimidine metabolism	86.67	39 of 45
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	purine metabolism	84.04	79 of 94
[Ref.: #66794]	vitamin B12 metabolism	82.35	28 of 34
[Ref.: #66794]	glutamate and glutamine metabolism	82.14	23 of 28
[Ref.: #66794]	tryptophan metabolism	81.58	31 of 38
[Ref.: #66794]	methionine metabolism	80.77	21 of 26
[Ref.: #66794]	3-chlorocatechol degradation	80	4 of 5
[Ref.: #66794]	gallate degradation	80	4 of 5
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	tyrosine metabolism	78.57	11 of 14
[Ref.: #66794]	degradation of pentoses	78.57	22 of 28
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	77.78	7 of 9
[Ref.: #66794]	histidine metabolism	75.86	22 of 29
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	carnitine metabolism	75	6 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	biotin biosynthesis	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	arginine metabolism	75	18 of 24
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	pentose phosphate pathway	72.73	8 of 11
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	d-xylose degradation	72.73	8 of 11
[Ref.: #66794]	degradation of sugar acids	72	18 of 25
[Ref.: #66794]	oxidative phosphorylation	71.43	65 of 91
[Ref.: #66794]	ubiquinone biosynthesis	71.43	5 of 7
[Ref.: #66794]	glutathione metabolism	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	71.43	10 of 14
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	phenol degradation	70	14 of 20
[Ref.: #66794]	4-hydroxyphenylacetate degradation	70	7 of 10
[Ref.: #66794]	lysine metabolism	69.05	29 of 42
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	IAA biosynthesis	66.67	2 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	methane metabolism	66.67	2 of 3
[Ref.: #66794]	non-pathway related	65.79	25 of 38
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	hydrogen production	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	myo-inositol biosynthesis	60	6 of 10
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	vitamin K metabolism	60	3 of 5
[Ref.: #66794]	3-phenylpropionate degradation	60	9 of 15
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	propanol degradation	57.14	4 of 7
[Ref.: #66794]	degradation of hexoses	55.56	10 of 18
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	53.85	7 of 13
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	ascorbate metabolism	50	11 of 22
[Ref.: #66794]	ribulose monophosphate pathway	50	1 of 2
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	cyclohexanol degradation	50	2 of 4
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	ketogluconate metabolism	50	4 of 8
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	factor 420 biosynthesis	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	arachidonic acid metabolism	38.89	7 of 18
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	ginsenoside metabolism	31.25	5 of 16
[Ref.: #66794]	starch degradation	30	3 of 10
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	methanogenesis from CO2	25	3 of 12
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	daunorubicin biosynthesis	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64998]	Sample type/isolated from	enrichment culture of surface seawater contaminated with weathered oil (slicks) from the Deep Water Horizon (DWH) oil spill
[Ref.: #64998]	Geographic location (country and/or sea, region)	Gulf of Mexiko, (28° 43.967 N, 88° 22.993 W)
[Ref.: #64998]	Country	USA
[Ref.: #64998]	Country ISO 3 Code	USA
[Ref.: #64998]	Continent	North America
[Ref.: #64998]	Geographic location	28.7328°/-88.3832°

[Ref.: #65345]	Sample type/isolated from	oil-contaminated surface seawater
[Ref.: #65345]	Sampling date	2010-06-01
[Ref.: #65345]	Geographic location (country and/or sea, region)	Macondo wellhead, Golf of Mexico
[Ref.: #65345]	Geographic location	28.7327°/-88.3832°
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	#Lab enrichment
#Environmental	#Aquatic	#Marine
#Engineered	#Contamination	#Oil (Fuel)
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64998]	Tritonibacter horizontis strain O3.65, whole genome shotgun sequencing project	LPUY00000000.1	139	GenBank ENA	1768241 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tritonibacter horizontis O3.65	GCA_001518015	contig	GenBank ENA	1768241 tax ID	*
[Ref.: #66792]	Tritonibacter horizontis O3.65	2788500136	draft	JGI IMG/M	1768241 tax ID	*

[Ref.: #64998]	GC-content	61.5 mol%
[Ref.: #65345]	GC-content	61.5 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Tritonibacter horizontis O3.65 NCBI: GCA_001518015
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	95.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	68.6
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	97.4
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	92

Availability in culture collections External links

[Ref.: #64998]

Culture collection no.

DSM 101689, LMG 29740

[Ref.: #111132]

SI-ID 408172

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tritonibacter horizontis gen. nov., sp. nov., a member of the Rhodobacteraceae, isolated from the Deepwater Horizon oil spill.	Klotz F, Brinkhoff T, Freese HM, Wietz M, Teske A, Simon M, Giebel HA	Int J Syst Evol Microbiol	10.1099/ijsem.0.002573	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64998

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101689

#65345

Franziska Klotz, Thorsten Brinkhoff, Heike M. Freese, Matthias Wietz, Andreas Teske, Meinhard Simon, Helge-Ansgar Giebel: Tritonibacter horizontis gen. nov., sp. nov., a member of the Rhodobacteraceae, isolated from the Deepwater Horizon oil spill. IJSEM 68: 736 - 744 2018 ( DOI 10.1099/ijsem.0.002573 , PubMed 29458459 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#111132

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408172.1 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Tritonibacter horizontis in external resources:
SILVA
BRENDA
PANGAEA
GBIF