Name: Nonomuraea cavernae DSM 103465
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158292

Type strain:

Species: Nonomuraea cavernae

Culture col. no.: DSM 103465, CGMCC 4.7368, KCTC 39805, SYSU K10005

Strain history: <- Wen-jun Li, Sun Yat-Sen Univ.

NCBI tax ID(s): 2045107 (species)

SI-ID 405599

DSM 103465

Section

Nonomuraea cavernae DSM 103465 is an aerobe, spore-forming, mesophilic bacterium that was isolated from From Karst cave soil samples.

Gram-positive
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Nonomuraea*
	Species	**Nonomuraea cavernae**
	Full Scientific Name (LPSN)	Nonomuraea cavernae Fang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #65275]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #65275]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %96.417

[Ref.: #65275]	Pigment production	no
[Ref.: #65275]	Pigment name	melanin
[Ref.: #65275]	Pigment production	no
[Ref.: #65275]	Pigment name	soluble pigments

[Ref.: #65275]	Multicellular complex forming ability	yes
[Ref.: #65275]	Multicellular complex color	pink
[Ref.: #65275]	Multicellular complex further description	extensively branched substrate mycelia and light white aerial hyphae. Aerial mycelia bear spiral chains of spores with smooth surfaces.

Multimedia content

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Caption:

Medium 554 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ISP 2

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Czapek's agar

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Culture medium growth

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Culture medium

ISP 6

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Culture medium growth

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Culture medium

ISP 3

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Culture medium growth

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Culture medium

ISP 4

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Culture medium growth

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Culture medium

ISP 7

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Culture medium growth

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Culture medium

ISP 5

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Culture medium growth

		Temperature
[Ref.: #64952]	growth	28 °C
[Ref.: #65275]	growth	15-37 °C
[Ref.: #65275]	optimum	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #64952]	Temperature range	mesophilic
[Ref.: #65275]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65275]			optimum	7
[Ref.: #65275]			growth	5-12

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65275]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65275]		NaCl		growth	0-2.5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65275]	cellobiose ChEBI	+	carbon source
[Ref.: #65275]	cellulose ChEBI	+	hydrolysis
[Ref.: #65275]	D-fructose ChEBI	+	carbon source
[Ref.: #65275]	D-galactose ChEBI	+	carbon source
[Ref.: #65275]	D-glucose ChEBI	+	carbon source
[Ref.: #65275]	D-mannitol ChEBI	+	carbon source
[Ref.: #65275]	D-mannose ChEBI	-	carbon source
[Ref.: #65275]	D-ribose ChEBI	+	carbon source
[Ref.: #65275]	D-sorbitol ChEBI	+	carbon source
[Ref.: #65275]	D-xylose ChEBI	-	carbon source
[Ref.: #65275]	gelatin ChEBI	+	hydrolysis
[Ref.: #65275]	glycerol ChEBI	+	carbon source
[Ref.: #65275]	glycine ChEBI	-	nitrogen source
[Ref.: #65275]	L-alanine ChEBI	+	nitrogen source
[Ref.: #65275]	L-arabinose ChEBI	-	carbon source
[Ref.: #65275]	L-arginine ChEBI	+	nitrogen source
[Ref.: #65275]	L-aspartate ChEBI	-	nitrogen source
[Ref.: #65275]	L-cysteine ChEBI	-	nitrogen source
[Ref.: #65275]	L-glutamate ChEBI	-	nitrogen source
[Ref.: #65275]	L-glutamine ChEBI	-	nitrogen source
[Ref.: #65275]	L-histidine ChEBI	-	nitrogen source
[Ref.: #65275]	L-lysine ChEBI	+	nitrogen source
[Ref.: #65275]	L-methionine ChEBI	-	nitrogen source
[Ref.: #65275]	L-phenylalanine ChEBI	-	nitrogen source
[Ref.: #65275]	L-proline ChEBI	+	nitrogen source
[Ref.: #65275]	L-rhamnose ChEBI	-	carbon source
[Ref.: #65275]	L-serine ChEBI	-	nitrogen source
[Ref.: #65275]	L-threonine ChEBI	-	nitrogen source
[Ref.: #65275]	L-tryptophan ChEBI	-	nitrogen source
[Ref.: #65275]	L-tyrosine ChEBI	-	nitrogen source
[Ref.: #65275]	L-valine ChEBI	-	nitrogen source
[Ref.: #65275]	lactose ChEBI	-	carbon source
[Ref.: #65275]	maltose ChEBI	-	carbon source
[Ref.: #65275]	milk	-	assimilation
[Ref.: #65275]	myo-inositol ChEBI	+	carbon source
[Ref.: #65275]	nitrate ChEBI	-	reduction
[Ref.: #65275]	raffinose ChEBI	+	carbon source
[Ref.: #65275]	starch ChEBI	-	hydrolysis
[Ref.: #65275]	sucrose ChEBI	+	carbon source
[Ref.: #65275]	tween 20 ChEBI	-	hydrolysis
[Ref.: #65275]	tween 40 ChEBI	-	hydrolysis
[Ref.: #65275]	tween 60 ChEBI	-	hydrolysis
[Ref.: #65275]	tween 80 ChEBI	-	hydrolysis
[Ref.: #65275]	xylitol ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #65275]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #65275]	catalase	-	1.11.1.6
[Ref.: #65275]	cytochrome oxidase	+	1.9.3.1
[Ref.: #65275]	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C16:0 iso	36.7
C17:0 10-methyl	17.2
C17:1ω8c	11.5
C17:0	8.6
C17:0 anteiso	3.5
C15:0 iso	3.4
C15:0 anteiso	2.1
C16:0	1.9
iso-C 17:1ω9c and/or 10-methyl C16:0	1.5
C18:0 iso	1.5
C17:0 iso	1.5
C18:0	1.4
C 15:0 2-OH	0.7
C16:1ω7c/C16:1ω6c	0.6
C 17:0 2-OH	0.5
C19:1ω11c and/or C19:1ω9c	0.5
C18:1ω9c	0.5
C15:1ω5c	0.4
C13:0	0.4
C14:0	0.3
C 18:1 2-OH	0.3
C12:0	0.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From Karst cave soil samples
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #64952]	Sample type/isolated from	karst cave soil
[Ref.: #64952]	Geographic location (country and/or sea, region)	Guizhou province, Xingyi county (25' 09'' N 104° 46' E)
[Ref.: #64952]	Country	China
[Ref.: #64952]	Country ISO 3 Code	CHN
[Ref.: #64952]	Continent	Asia
[Ref.: #64952]	Geographic location	25.1500°/104.7670°

[Ref.: #65275]	Sample type/isolated from	soil sample
[Ref.: #65275]	Geographic location (country and/or sea, region)	karst cave in Xingyi county, Guizhou province
[Ref.: #65275]	Country	China
[Ref.: #65275]	Country ISO 3 Code	CHN
[Ref.: #65275]	Continent	Asia
[Ref.: #65275]	Geographic location	25.1500°/104.7670°
[Ref.: #65275]	Enrichment culture	T5 medium
[Ref.: #65275]	Enrichment culture composition	supplemented with cycloheximide (50 mg l-1) and nalidixic acid (20 mg l-1)
[Ref.: #65275]	Enrichment culture duration	2 weeks
[Ref.: #65275]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Geologic
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64952]	Nonomuraea cavernae strain SYSU K10005 16S ribosomal RNA gene, partial sequence	KY788340	1517	ENA	2045107 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nonomuraea cavernae CGMCC 4.7368	GCA_014646355	scaffold	GenBank	2045107 tax ID	*
[Ref.: #66792]	Nonomuraea cavernae strain CGMCC 4.7368	2045107.3	wgs	PATRIC	2045107 tax ID	*

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GC-content

64.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nonomuraea cavernae CGMCC 4.7368 NCBI: GCA_014646355.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nonomuraea cavernae CGMCC 4.7368 NCBI: GCA_014646355.1
[Ref.: #69480]	flagellated	no	97.925	yes
[Ref.: #69480]	gram-positive	yes	87.086	no
[Ref.: #69480]	anaerobic	no	98.747	no
[Ref.: #69480]	aerobic	yes	90.752	yes
[Ref.: #69480]	halophile	no	93.963	no
[Ref.: #69480]	spore-forming	yes	93.39	no
[Ref.: #69480]	thermophile	no	97.555	no
[Ref.: #69480]	glucose-util	yes	86.708	yes
[Ref.: #69480]	motile	no	92.62	yes
[Ref.: #69480]	glucose-ferment	no	90.951	no

Availability in culture collections External links

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Culture collection no.

DSM 103465, CGMCC 4.7368, KCTC 39805, SYSU K10005

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SI-ID 405599

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nonomuraea aurantiaca sp. nov., a novel cellulase-producing actinobacterium isolated from soil.	Lin J, Zhang L, Qian L, Yang Y, Xiang W, Zhao J, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.005411	2022	*
Phylogeny	Nonomuraea cavernae sp. nov., a novel actinobacterium isolated from a karst cave sample.	Fang BZ, Hua ZS, Han MX, Zhang ZT, Wang YH, Yang ZW, Zhang WQ, Xiao M, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002364	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64952

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103465

#65275

Bao-Zhu Fang, Zheng-Shuang Hua, Ming-Xian Han, Zi-Tong Zhang, Yi-Huan Wang, Zi-Wen Yang, Wan-Qin Zhang, Min Xiao, Wen-Jun Li: Nonomuraea cavernae sp. nov., a novel actinobacterium isolated from a karst cave sample. IJSEM 67: 4692 - 4697 2017 ( DOI 10.1099/ijsem.0.002364 , PubMed 28984569 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111109

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405599.1 )

* These data were automatically processed and therefore are not curated

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Nonomuraea cavernae CGMCC 4.7368

Nonomuraea cavernae CGMCC 4.7368

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