Name: Aliiroseovarius lamellibrachiae DSM 104669
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158280

Type strain:

Species: Aliiroseovarius lamellibrachiae

Culture col. no.: DSM 104669, JCM 31859, JAM 119

Strain history: Y. Nogi; JAMSTEC, Japan; JAM 119.

NCBI tax ID(s): 1924933 (species)

SI-ID 404462

DSM 104669

Section

Aliiroseovarius lamellibrachiae DSM 104669 is an aerobe, chemoorganotroph, mesophilic bacterium that forms circular colonies and was isolated from the trophosome of a tubeworm .

colony-forming
rod-shaped
aerobe
chemoorganotroph
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Aliiroseovarius*
	Species	**Aliiroseovarius lamellibrachiae**
	Full Scientific Name (LPSN)	Aliiroseovarius lamellibrachiae (Nogi et al. 2017) Zhang et al. 2023

Synonym

Planktotalea lamellibrachiae

Information on morphological and physiological properties Morphology

[Ref.: #65416]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #65416]	Cell length	2.0-3.5 µm

[Ref.: #65416]	Cell width	0.5-0.8 µm

[Ref.: #65416]	Cell shape	ovoid-shaped
[Ref.: #65416]	Cell shape	rod-shaped

[Ref.: #65416]	Motility	yes

[Ref.: #65416]	Flagellum arrangement	polar

[Ref.: #65416]	Colony size	1-2 mm
[Ref.: #65416]	Colony shape	circular
[Ref.: #65416]	Incubation period	2 days
[Ref.: #65416]	Cultivation medium used	marine agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64940]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #64940]

Culture medium growth

[Ref.: #64940]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64940]

Culture medium composition

expand / minimize

[Ref.: #65416]

Culture medium

Marine agar (MA)

[Ref.: #65416]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #64940]		growth	30 °C
[Ref.: #65416]		optimum	25-27 °C
[Ref.: #65416]	no	growth	32 °C
[Ref.: #67770]		growth	25 °C

[Ref.: #64940]	Temperature range	mesophilic
[Ref.: #65416]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #65416]			optimum	7
[Ref.: #65416]			growth	6.0-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #65416]

Oxygen tolerance

aerobe

[Ref.: #65416]

Nutrition type

chemoorganotroph

[Ref.: #65416]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #65416]		NaCl		growth	3	%

[Ref.: #65416]	Observation	predominant quinone is Q-10
[Ref.: #65416]	Observation	polar lipids are phosphatidylcholine, phosphatidylglycerol, an unidentified phospholipid and two unidentified aminolipids
[Ref.: #67770]	Observation	quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #65416]	agar ChEBI	-	hydrolysis
[Ref.: #65416]	casein	-	hydrolysis
[Ref.: #65416]	cellobiose ChEBI	-	builds acid from
[Ref.: #65416]	cellulose ChEBI	-	hydrolysis
[Ref.: #65416]	crab shell chitin	-	hydrolysis
[Ref.: #65416]	D-fructose ChEBI	-	builds acid from
[Ref.: #65416]	D-galactose ChEBI	+	builds acid from
[Ref.: #65416]	D-glucose ChEBI	+	builds acid from
[Ref.: #65416]	D-mannitol ChEBI	+	builds acid from
[Ref.: #65416]	D-mannose ChEBI	-	builds acid from
[Ref.: #65416]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #65416]	D-xylose ChEBI	-	builds acid from
[Ref.: #65416]	esculin ferric citrate	-	hydrolysis
[Ref.: #65416]	ferric citrate ChEBI	-	builds acid from
[Ref.: #65416]	gelatin ChEBI	-	hydrolysis
[Ref.: #65416]	glycerol ChEBI	+	builds acid from
[Ref.: #65416]	L-arabinose ChEBI	-	builds acid from
[Ref.: #65416]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #65416]	lactose ChEBI	-	builds acid from
[Ref.: #65416]	maltose ChEBI	-	builds acid from
[Ref.: #65416]	myo-inositol ChEBI	+	builds acid from
[Ref.: #65416]	nitrate ChEBI	+	reduction
[Ref.: #65416]	sodium acetate ChEBI	-	builds acid from
[Ref.: #65416]	starch ChEBI	-	hydrolysis
[Ref.: #65416]	sucrose ChEBI	-	builds acid from
[Ref.: #65416]	trehalose ChEBI	-	builds acid from
[Ref.: #65416]	tween 80 ChEBI	+	hydrolysis
[Ref.: #65416]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #65416]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #65416]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #65416]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #65416]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #65416]	penicillin g ChEBI	yes	10	Unit
[Ref.: #65416]	polymyxin b ChEBI				yes	300	µg (disc)
[Ref.: #65416]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #65416]	tetracycline ChEBI	yes	30	µg (disc)

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #65416]

Fatty acid	Percentage
C18:1ω7c	73.3
C16:0	10.8
C18:2ω6c	8.7
C14:0 3OH	2.3
C16:1ω7c	1.7
C12:0	1.1
C18:0	1.1
C17:0	0.6
C10:0 3OH	0.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64940]	Sample type/isolated from	the trophosome of a tubeworm (Lamellibrachia satsuma)
[Ref.: #64940]	Geographic location (country and/or sea, region)	Kagoshima Bay (31° 39.753' N, 130° 48.058' E)
[Ref.: #64940]	Country	Japan
[Ref.: #64940]	Country ISO 3 Code	JPN
[Ref.: #64940]	Continent	Asia
[Ref.: #64940]	Geographic location	31.6626°/130.8010°

[Ref.: #65416]	Sample type/isolated from	isolated from the trophosome of a tubeworm (Lamellibrachia satsuma)
[Ref.: #65416]	Geographic location (country and/or sea, region)	Kagoshima Bay
[Ref.: #65416]	Country	Japan
[Ref.: #65416]	Country ISO 3 Code	JPN
[Ref.: #65416]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Tubeworm trophosome in Kagoshima Bay
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Annelida
#Host Body-Site	#Organ	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC200412 (>99% sequence identity) for Planktotalea lamellibrachiae subclade from Microbeatlas

Aquatic Samples	356
Soil Samples	2
Animal Samples	162
Plant Samples	3
Total Samples	523

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64940]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #65416]	16S rRNA gene sequence	LC200412		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Planktotalea lamellibrachiae DSM 104669	GCA_018599245	scaffold	GenBank	1924933 tax ID	*
[Ref.: #66792]	Planktotalea lamellibrachiae strain DSM 104669	1924933.3	wgs	PATRIC	1924933 tax ID	*

[Ref.: #64940]

GC-content

57 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Planktotalea lamellibrachiae DSM 104669 NCBI: GCA_018599245.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Planktotalea lamellibrachiae DSM 104669 NCBI: GCA_018599245.1
[Ref.: #69480]	flagellated	no	57.072	yes
[Ref.: #69480]	gram-positive	no	98.484	yes
[Ref.: #69480]	anaerobic	no	98.566	yes
[Ref.: #69480]	aerobic	yes	86.533	yes
[Ref.: #69480]	halophile	yes	64.137	no
[Ref.: #69480]	spore-forming	no	95.842	yes
[Ref.: #69480]	thermophile	no	95.524	no
[Ref.: #69480]	glucose-util	yes	57.114	no
[Ref.: #69480]	motile	yes	62.892	yes
[Ref.: #69480]	glucose-ferment	no	90.709	no

Availability in culture collections External links

[Ref.: #64940]

Culture collection no.

DSM 104669, JCM 31859, JAM 119

[Ref.: #111098]

SI-ID 404462

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64940

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104669

#65416

Yuichi Nogi, Shinro Nishi, Sumihiro Koyama: Planktotalea lamellibrachiae sp. nov., isolated from a marine organism in Kagoshima Bay, Japan. IJSEM 67: 4785 - 4789 2017 ( DOI 10.1099/ijsem.0.002375 , PubMed 28984545 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111098

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404462.1 )

* These data were automatically processed and therefore are not curated

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Planktotalea lamellibrachiae DSM 104669

Planktotalea lamellibrachiae DSM 104669

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