Name: Caecibacterium sporoformans 77-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158263

Type strain:

Species: Caecibacterium sporoformans

Strain Designation: 77-5

Culture col. no.: DSM 103070, LMG 27730

Strain history: <- L. Onrust, Ghent Univ., Belgium; 77-5 <- V. Eeckhaut {2007}

NCBI tax ID(s): 915180 (species)

SI-ID 407771

DSM 103070

Other strains from Caecibacterium sporoformans

C. sporoformans V19-240a1aT, DSM 100432

Section

Caecibacterium sporoformans 77-5 is a mesophilic bacterium that was isolated from caecal content of a chicken .

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	[Bacillota, not assigned to class]
	Order	[Bacillota, not assigned to order]
	Family	[Bacillota, not assigned to family]
	Genus	*Caecibacterium*
	Species	**Caecibacterium sporoformans**
	Full Scientific Name (LPSN)	Caecibacterium sporoformans Oren et al. 2019

Synonym

"Caecibacterium sporoformans"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64922]

Culture medium

PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)

[Ref.: #64922]

Culture medium growth

[Ref.: #64922]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64922]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64922]			growth	37 °C

[Ref.: #64922]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64922]	Sample type/isolated from	caecal content of a chicken (Gallus gallus)
[Ref.: #64922]	Geographic location (country and/or sea, region)	Ghent, Merelbeke
[Ref.: #64922]	Country	Belgium
[Ref.: #64922]	Country ISO 3 Code	BEL
[Ref.: #64922]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Birds	#Chicken
#Host Body Product	#Gastrointestinal tract	#Caecal content

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HQ452857 (>99% sequence identity) for Caecibacterium sporoformans subclade from Microbeatlas

Aquatic Samples	476
Soil Samples	237
Animal Samples	6153
Plant Samples	127
Total Samples	6993

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64922]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64922]	Caecibacterium sporoformans strain 77-5d 16S ribosomal RNA gene, partial sequence	HQ452857	1463	ENA	915180 tax ID

Availability in culture collections External links

[Ref.: #64922]

Culture collection no.

DSM 103070, LMG 27730

[Ref.: #111081]

SI-ID 407771

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Caecibacterium sporoformans gen. nov., sp. nov., an anaerobic, butyrate-producing, spore-forming bacterium isolated from chicken caecum.	Onrust L, Petzoldt D, Eeckhaut V, De Maesschalck C, Haesebrouck F, Rautenschlein S, Ducatelle R, Van Immerseel F, Taras D	Int J Syst Evol Microbiol	10.1099/ijsem.0.002338	2017	*
Phylogeny	Valid publication of the names Caecibacterium and Caecibacterium sporoformans.	Oren A, Garrity GM, Spring S, Onrust L, Petzoldt D, Eeckhaut V, De Maesschalck C, Haesebrouck F, Rautenschlein S, Ducatelle R, Van Immerseel F, Taras D	Int J Syst Evol Microbiol	10.1099/ijsem.0.003173	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64922

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103070

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#111081

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407771.1 )

* These data were automatically processed and therefore are not curated

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