Name: Limibacillus halophilus DSM 107959
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158190

Type strain:

Species: Limibacillus halophilus

Culture col. no.: DSM 107959, CECT 8803, KCTC 42420, NBRC 110928, CAU 1121

Strain history: <- CECT <- J.-H. Kim, Chung-Ang University College of Medicine, Seoul, South Korea

NCBI tax ID(s): 1579333 (species)

SI-ID 408329

DSM 107959

Special Collections

DSMZ
KCTC

Section

Limibacillus halophilus DSM 107959 is a bacterium that was isolated from reclaimed land.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Rhodovibrionaceae*
	Genus	*Limibacillus*
	Species	**Limibacillus halophilus**
	Full Scientific Name (LPSN)	Limibacillus halophilus Kim et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64786]

Culture medium

MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)

[Ref.: #64786]

Culture medium growth

[Ref.: #64786]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64786]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64786]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64786]	Sample type/isolated from	reclaimed land
[Ref.: #64786]	Country	Republic of Korea
[Ref.: #64786]	Country ISO 3 Code	KOR
[Ref.: #64786]	Continent	Asia
[Ref.: #64786]	Geographic location	37.5367°/126.4140°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP233090 (>99% sequence identity) for Limibacillus halophilus subclade from Microbeatlas

Aquatic Samples	1651
Soil Samples	138
Animal Samples	51
Plant Samples	16
Total Samples	1856

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64786]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64786]	Limibacillus halophilus strain CAU 1121 16S ribosomal RNA gene, partial sequence	KP233090	1402	GenBank ENA	1579333 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Limibacillus halophilus CECT 8803	GCA_014191775	scaffold	GenBank ENA	1579333 tax ID	*
[Ref.: #66792]	Limibacillus halophilus strain CECT 8803	1579333.3	wgs	PATRIC	1579333 tax ID	*
[Ref.: #66792]	Limibacillus halophilus CECT 8803	2824284844	draft	JGI IMG/M	1579333 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Limibacillus halophilus CECT 8803 NCBI: GCA_014191775.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Limibacillus halophilus CECT 8803 NCBI: GCA_014191775.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.208	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	79.037	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.407	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.661	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	69.197	no

Availability in culture collections External links

[Ref.: #64786]

Culture collection no.

DSM 107959, CECT 8803, KCTC 42420, NBRC 110928, CAU 1121

[Ref.: #111021]

SI-ID 408329

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Limibacillus halophilus gen. nov., sp. nov., a moderately halophilic bacterium in the family Rhodospirillaceae isolated from reclaimed land.	Kim JH, Konkit M, Yoon JH, Kim W	Int J Syst Evol Microbiol	10.1099/ijs.0.000346	2015	*
Phylogeny	Denitrobaculum tricleocarpae gen. nov., sp. nov., a marine bacterium from coralline algae Tricleocarpa sp.	Wang G, Tang D, Li G, Xu S, Dang G, Su H, Liao Z, Chen B, Huang W, Liang J, Yu K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004173	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64786

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107959

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111021

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408329.1 )

* These data were automatically processed and therefore are not curated

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Limibacillus halophilus CECT 8803

Limibacillus halophilus CECT 8803

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