Micromonospora costi (DSM 108663, BCC 58124, NBRC 109518)

Name: Micromonospora costi (DSM 108663, BCC 58124, NBRC 109518)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158182

Type strain

Strain Designation CS1-12

Culture col. no. DSM 108663 BCC 58124 NBRC 109518 CS1-12 JCM 32901

NCBI tax ID(s) 1530042

Special Collections DSMZ JCM

Links

Micromonospora costi CS1-12 is a mesophilic prokaryote that was isolated from leaf of Costus speciosus.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 408274

NBRC 109518,DSM 108663

@ref 20215

Last LPSN update 2025-12-16 10:07:58

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Micromonospora

Species Micromonospora costi

Full scientific name Micromonospora costi Thawai 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.8

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
64776	N-Z-AMINE-MEDIUM (DSMZ Medium 554)	Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water
64776	CZAPEK PEPTONE AGAR (DSMZ Medium 83)	Medium recipe at MediaDive	Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water
64776	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
64776	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.8

Observation

67770

Observationquinones: MK-10(H₆)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Host species
64776	leaf of Costus speciosus	Nakornnayok province, herb garden	Thailand	THA	Asia
67770	Leaf of Costus speciosus from a herb garden in Nakornnayok Province		Thailand	THA	Asia	Costus speciosus

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64776	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM362665v1 assembly for Micromonospora costi CS1-12	contig	GCA_003626655	1530042.3	2867339791	1530042	71.09

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64776	Micromonospora costi gene for 16S ribosomal RNA, partial sequence	AB981048	1503		1530042

GC content

@ref	GC-content (mol%)	Method
67770	73	genome sequence analysis
67770	72.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Micromonospora costi CS1-12
NCBI: GCA_003626655

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	81.40	no
125439	motility	BacteriaNetⓘ	no	87.20	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.80	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Micromonospora azadirachtae sp. nov., isolated from roots of Azadirachta indica A. Juss. var. siamensis Valeton.	Kuncharoen N, Kudo T, Ohkuma M, Tanasupawat S	Antonie Van Leeuwenhoek	10.1007/s10482-018-1152-3	2018
Phylogeny	Micromonospora costi sp. nov., isolated from a leaf of Costus speciosus.	Thawai C	Int J Syst Evol Microbiol	10.1099/ijs.0.000120	2015
Phylogeny	Micromonospora globbae sp. nov., an endophytic actinomycete isolated from roots of Globba winitii C. H. Wright.	Kuncharoen N, Pittayakhajonwut P, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002625	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64776	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108663
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Micromonospora costi (DSM 108663, BCC 58124, NBRC 109518)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003626655

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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