Name: Glycomyces artemisiae IXS4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 158170

Type strain:

Species: Glycomyces artemisiae

Strain Designation: IXS4

Culture col. no.: DSM 108656, CGMCC 4.7067, HBUM 178000, NRBC 109773

Strain history: <- NBRC; NRBC 109773 <- Z. Xiumin, Hebei Univ., College Life Sciences, Baoding, China; IXS4

NCBI tax ID(s): 1076443 (species)

SI-ID 397627

DSM 108656

Special Collections

DSMZ

Section

Glycomyces artemisiae IXS4 is a spore-forming bacterium that was isolated from roots of Artemisia argyi.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Glycomycetales*
	Family	*Glycomycetaceae*
	Genus	*Glycomyces*
	Species	**Glycomyces artemisiae**
	Full Scientific Name (LPSN)	Glycomyces artemisiae Zhang et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.857

[Ref.: #69480]	Motility	no Confidence in %91.6

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64763]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #64763]

Culture medium growth

[Ref.: #64763]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64763]

Culture medium composition

expand / minimize

[Ref.: #64763]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #64763]

Culture medium growth

[Ref.: #64763]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64763]

Culture medium composition

expand / minimize

[Ref.: #64763]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #64763]

Culture medium growth

[Ref.: #64763]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64763]

Culture medium composition

expand / minimize

[Ref.: #64763]

Culture medium

BENNETT'S AGAR (DSMZ Medium 548)

[Ref.: #64763]

Culture medium growth

[Ref.: #64763]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64763]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64763]			growth	20 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64763]	Sample type/isolated from	roots of Artemisia argyi
[Ref.: #64763]	Geographic location (country and/or sea, region)	Yesanpo, Laishui, Hebei province (39° 40' N, 115° 27' E)
[Ref.: #64763]	Country	China
[Ref.: #64763]	Country ISO 3 Code	CHN
[Ref.: #64763]	Continent	Asia
[Ref.: #64763]	Geographic location	39.6667°/115.4500°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64763]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64763]	Glycomyces artemisiae strain IXS4 16S ribosomal RNA gene, complete sequence	JN408755	1487	GenBank ENA	1076443 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Glycomyces artemisiae CGMCC 4.7067	GCA_003002955	scaffold	GenBank ENA	1076443 tax ID	*
[Ref.: #66792]	Glycomyces artemisiae strain CGMCC 4.7067	1076443.3	wgs	PATRIC	1076443 tax ID	*
[Ref.: #66792]	Glycomyces artemisiae CGMCC 4.7067	2718217679	draft	JGI IMG/M	1076443 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Glycomyces artemisiae CGMCC 4.7067 NCBI: GCA_003002955.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Glycomyces artemisiae CGMCC 4.7067 NCBI: GCA_003002955.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.857	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.888	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.389	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	82.706	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	90.917	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91.6	no

Availability in culture collections External links

[Ref.: #64763]

Culture collection no.

DSM 108656, CGMCC 4.7067, HBUM 178000, NRBC 109773

[Ref.: #111001]

SI-ID 397627

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Glycomyces artemisiae sp. nov., an endophytic actinomycete isolated from the roots of Artemisia argyi.	Zhang X, Ren K, Du J, Liu H, Zhang L	Int J Syst Evol Microbiol	10.1099/ijs.0.063388-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64763

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108656

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#111001

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397627.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Glycomyces artemisiae in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Glycomyces artemisiae CGMCC 4.7067

Glycomyces artemisiae CGMCC 4.7067

Change proposal

Change proposal