Alicyclobacillus cellulosilyticus (DSM 107339, JCM 18487, KCTC 33007)

Name: Alicyclobacillus cellulosilyticus (DSM 107339, JCM 18487, KCTC 33007)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158167

Type strain

Strain Designation Sueoka

Culture col. no. DSM 107339 JCM 18487 KCTC 33007 Sueoka

NCBI tax ID(s) 1003997

Special Collections DSMZ JCM KCTC

History DSMZ <- Japan Collection of Microorganisms (JCM), RIKEN BioResource Center, Tsukuba; JCM 18487 <- M. Kusube; strain Sueoka JCM <-- M. Kusube strain Sueoka.

Links

Alicyclobacillus cellulosilyticus Sueoka is a bacterium that was isolated from steamed Japanese cedar chips from a lumbermill.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403766

KCTC 33007,JCM 18487,DSM 107339

@ref 20215

Last LPSN update 2026-05-29 08:43:54

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Alicyclobacillaceae

Genus Alicyclobacillus

Species Alicyclobacillus cellulosilyticus

Full scientific name Alicyclobacillus cellulosilyticus Kusube et al. 2014

Synonyms (1)

"Paenalicyclobacillus cellulosilyticus"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64760	ALICYCLOBACILLUS CELLULOSILYTICUS MEDIUM (DSMZ Medium 1684)		Medium recipe at MediaDive	Name: Alicyclobacillus cellulosilyticus Medium (DSMZ Medium 1684; with strain-specific modifications) Composition: Agar 20.0 g/l Carboxymethylcellulose 2.5 g/l (NH4)2SO4 1.3 g/l Glucose 1.0 g/l Tryptone 0.9 g/l KH2PO4 0.37 g/l Yeast extract 0.25 g/l MgSO4 x 7 H2O 0.25 g/l CaCl2 x 2 H2O 0.07 g/l FeCl3 x 6 H2O 0.02 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
64760	positive	growth	55
67770	positive	growth	55

Physiology and metabolism

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Industrial	#Engineered product
#Host Body Product	#Plant	#Timber

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
64760	steamed Japanese cedar chips from a lumbermill	Wakayama, Gobo	Japan	JPN	Asia
67770	Steamed Japanese ceder chips from a lumber mill in Gobo	Wakayama	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AB622813 (>99% sequence identity) for Alicyclobacillus from Microbeatlas

Aquatic Samples	32
Soil Samples	391
Animal Samples	52
Plant Samples	15
Total Samples	490

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64760	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464731v1 assembly for Alicyclobacillus cellulosilyticus JCM 18487	scaffold	GCA_014647315	1003997.3	2995519260	1003997	24.41
66792	ASM2052133v1 assembly for Alicyclobacillus cellulosilyticus Sueoka	scaffold	GCA_020521335	1003997.4	8117353227	1003997	0

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64760	Alicyclobacillus cellulosilyticus gene for 16S rRNA, partial sequence	AB622813	1503		1003997

GC content

@ref	GC-content (mol%)	Method
64760	60.8
67770	60.8	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1464731v1 assembly for Alicyclobacillus cellulosilyticus JCM 18487
NCBI: GCA_014647315

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	60.06	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	71.96	no
125439	motility	BacteriaNetⓘ	yes	62.00	no
125439	spore_formation	BacteriaNetⓘ	no	87.21	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Alicyclobacillus cellulosilyticus JCM 18487
NCBI: GCA_014647315.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	69.60	no
125438	anaerobic	anaerobicⓘ	no	81.33	no
125438	aerobic	aerobicⓘ	yes	66.24	no
125438	spore-forming	spore-formingⓘ	yes	81.58	no
125438	thermophilic	thermophileⓘ	yes	56.28	no
125438	flagellated	motile2+ⓘ	yes	68.71	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Alicyclobacillus cellulosilyticus sp. nov., a thermophilic, cellulolytic bacterium isolated from steamed Japanese cedar chips from a lumbermill.	Kusube M, Sugihara A, Moriwaki Y, Ueoka T, Shimane Y, Minegishi H	Int J Syst Evol Microbiol	10.1099/ijs.0.061440-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64760	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107339
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alicyclobacillus cellulosilyticus (DSM 107339, JCM 18487, KCTC 33007)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014647315

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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