Phascolarctobacterium succinatutens (DSM 22533, JCM 16074, YIT 12067)

Name: Phascolarctobacterium succinatutens (DSM 22533, JCM 16074, YIT 12067)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 158153

Type strain

Strain Designation A177

Culture col. no. DSM 22533 JCM 16074 YIT 12067 A177

NCBI tax ID(s) 626939 626940

Special Collections DSMZ JCM

History DSMZ <- Y. Watanabe, Yakult Central Institute for Microbiological Research; YIT 12067 <- M. Morotomi and F. Nagai; A177 JCM <-- Y. Watane A177 (=YIT 12067).

Links

Phascolarctobacterium succinatutens A177 is a bacterium that was isolated from human faeces .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 406749

JCM 16074,DSM 22533

@ref 20215

Last LPSN update 2026-05-29 08:43:54

Domain Bacteria

Phylum Bacillota

Class Negativicutes

Order Acidaminococcales

Family Acidaminococcaceae

Genus Phascolarctobacterium

Species Phascolarctobacterium succinatutens

Full scientific name Phascolarctobacterium succinatutens Watanabe et al. 2012

BacDive ID	Other strains from **Phascolarctobacterium succinatutens** (1)	Type strain
158152	P. succinatutens B 162, DSM 22521, JCM 16075, YIT 12068

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
64739	PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c)	Medium recipe at MediaDive	Name: PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c; with strain-specific modifications) Composition: Yeast extract 10.0 g/l Disodium succinate 8.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l Na2CO3 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
64739	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)	Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
64739	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
64739	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	94.947

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	palmitate biosynthesis	95.45	21 of 22
66794	propionate fermentation	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	vitamin B12 metabolism	88.24	30 of 34
66794	propanol degradation	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	methylglyoxal degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	photosynthesis	78.57	11 of 14
66794	valine metabolism	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	pyrimidine metabolism	75.56	34 of 45
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	purine metabolism	73.4	69 of 94
66794	alanine metabolism	72.41	21 of 29
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	formaldehyde oxidation	66.67	2 of 3
66794	NAD metabolism	66.67	12 of 18
66794	glycolysis	64.71	11 of 17
66794	heme metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	hydrogen production	60	3 of 5
66794	flavin biosynthesis	60	9 of 15
66794	factor 420 biosynthesis	60	3 of 5
66794	oxidative phosphorylation	58.24	53 of 91
66794	methionine metabolism	57.69	15 of 26
66794	cysteine metabolism	55.56	10 of 18
66794	histidine metabolism	55.17	16 of 29
66794	vitamin B6 metabolism	54.55	6 of 11
66794	leucine metabolism	53.85	7 of 13
66794	non-pathway related	52.63	20 of 38
66794	tryptophan metabolism	52.63	20 of 38
66794	polyamine pathway	52.17	12 of 23
66794	gluconeogenesis	50	4 of 8
66794	selenocysteine biosynthesis	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	adipate degradation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	lysine metabolism	50	21 of 42
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	isoleucine metabolism	50	4 of 8
66794	CDP-diacylglycerol biosynthesis	50	1 of 2
66794	lactate fermentation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	lipid metabolism	48.39	15 of 31
66794	urea cycle	46.15	6 of 13
66794	sulfate reduction	46.15	6 of 13
66794	proline metabolism	45.45	5 of 11
66794	allantoin degradation	44.44	4 of 9
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	arginine metabolism	41.67	10 of 24
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	degradation of hexoses	38.89	7 of 18
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	ketogluconate metabolism	37.5	3 of 8
66794	pentose phosphate pathway	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	glutathione metabolism	35.71	5 of 14
66794	cyanate degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	d-mannose degradation	33.33	3 of 9
66794	nitrate assimilation	33.33	3 of 9
66794	degradation of pentoses	32.14	9 of 28
66794	glycine metabolism	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	degradation of sugar alcohols	25	4 of 16
66794	glycogen biosynthesis	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	phenol degradation	25	5 of 20
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	ascorbate metabolism	22.73	5 of 22

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)
#Host	#Human	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
64739	human faeces (healthy Japanese adult)	Homo sapiens	Tokyo	Japan	JPN	Asia
67770	Human feces	Homo sapiens

Taxonmaps

69479

Global distribution of 16S sequence AB490811 (>99% sequence identity) for Phascolarctobacterium succinatutens subclade from Microbeatlas

Aquatic Samples	3216
Soil Samples	672
Animal Samples	71670
Plant Samples	343
Total Samples	75901

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64739	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Phascolarctobacterium succinatutens 82G5 assembly for Phascolarctobacterium faecium	complete	GCA_900683765	626939.32	2836699358	626939	95.03
67770	ASM18817v1 assembly for Phascolarctobacterium succinatutens YIT 12067	scaffold	GCA_000188175	626939.3	649989983	626939	54.32

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64739	Phascolarctobacterium succinatutens YIT 12067 gene for 16S rRNA, partial sequence	AB490811	1610		626939

GC content

@ref	GC-content (mol%)	Method
64739	47	sequence analysis
64739	46.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Phascolarctobacterium succinatutens 82G5 assembly for Phascolarctobacterium faecium
NCBI: GCA_900683765

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.95	no
125439	motility	BacteriaNetⓘ	no	73.54	no
125439	gram_stain	BacteriaNetⓘ	positive	82.21	no
125439	spore_formation	BacteriaNetⓘ	no	83.74	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Phascolarctobacterium succinatutens YIT 12067 strain Phascolarctobacterium succinatutens 82G5
PATRIC: 626939.32

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	84.97	no
125438	anaerobic	anaerobicⓘ	yes	87.80	no
125438	spore-forming	spore-formingⓘ	no	75.68	no
125438	aerobic	aerobicⓘ	no	91.39	no
125438	thermophilic	thermophileⓘ	no	88.56	yes
125438	flagellated	motile2+ⓘ	no	81.96	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Gut-resident Phascolarctobacterium succinatutens decreases fat accumulation via MYC-driven epigenetic regulation of arginine biosynthesis.	Lan Q, Liufu S, Chen B, Wang K, Chen W, Xiao L, Liu X, Yi L, Liu J, Xu X, Liu C, Liu M, Yin Y, Ma H.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00792-w	2025
	Multi-omics profiling of dairy cattle oxidative stress identifies hindgut-derived Phascolarctobacterium succinatutens exhibiting antioxidant activity.	Gao D, Zhuang Y, Liu S, Ma B, Xu Y, Zhang H, Nuermaimaiti Y, Chen T, Hou G, Guo W, You J, Huang Z, Xiao J, Wang W, Li M, Li S, Cao Z.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00698-7	2025
Pathogenicity	Orally administered Odoribacter laneus improves glucose control and inflammatory profile in obese mice by depleting circulating succinate.	Huber-Ruano I, Calvo E, Mayneris-Perxachs J, Rodriguez-Pena MM, Ceperuelo-Mallafre V, Cedo L, Nunez-Roa C, Miro-Blanch J, Arnoriaga-Rodriguez M, Balvay A, Maudet C, Garcia-Roves P, Yanes O, Rabot S, Grimaud GM, De Prisco A, Amoruso A, Fernandez-Real JM, Vendrell J, Fernandez-Veledo S.	Microbiome	10.1186/s40168-022-01306-y	2022
	Gut commensals-derived succinate impels colonic inflammation in ulcerative colitis.	Dalal R, Sadhu S, Batra A, Goswami S, Dandotiya J, K V V, Yadav R, Singh V, Chaturvedi K, Kannan R, Kumar S, Kumar Y, Rathore DK, Salunke DB, Ahuja V, Awasthi A.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00672-3	2025
	Long-term Metformin Alters Gut Microbiota and Serum Metabolome in Coronary Artery Disease Patients After Percutaneous Coronary Intervention to Improve 5-year Prognoses: A Multi-omics Analysis.	Zhou R, Wu Q, Qian H, Wang L, Liu G, Zhang B, Wu W, Zhang S.	Rev Cardiovasc Med	10.31083/rcm26835	2025
	Fructo-oligosaccharides promote butyrate production over citrus pectin during in vitro fermentation by colonic inoculum from pig.	Zhang Y, Mu C, Yu K, Su Y, Zoetendal EG, Zhu W.	Anaerobe	10.1016/j.anaerobe.2024.102919	2024
	Parent-child microbiota relationships involved in childhood obesity: A CORALS ancillary study.	de Cuevillas B, Riezu-Boj JI, Milagro FI, Galera Alquegui S, Babio N, Pastor-Villaescusa B, Gil-Campos M, Leis R, De Miguel-Etayo P, Moreno LA, Salas-Salvado J, Martinez JA, Navas-Carretero S.	Nutrition	10.1016/j.nut.2024.112603	2025
	Association of gut microbiome with immune microenvironment in surgically treated colorectal cancer patients.	Han N, Chang HJ, Yeo HY, Kim BC, Kim B, Park SC, Kim J, Park JW, Oh JH.	Pathology	10.1016/j.pathol.2024.01.010	2024
	Exploring the role of gut microbiota in rheumatoid arthritis: the effects of diet and drug supplementation.	Genc DE, Ozbek O, Ulgen KO.	BMC Rheumatol	10.1186/s41927-025-00541-8	2025
Genetics	Co-cultivation of Lactobacillus acidophilus and Bacillus subtilis mediates the gut-muscle axis affecting pork quality and flavor.	Lin Z, Zhou X, Lu T, An W, Chen S, Li S, Miao H, Han X.	J Anim Sci Biotechnol	10.1186/s40104-025-01229-2	2025
	Long-term Metformin Alters Gut Microbiota and Serum Metabolome in Coronary Artery Disease Patients After Percutaneous Coronary Intervention to Improve 5-year Prognoses: A Multi-omics Analysis	Zhou R, Wu Q, Qian H, Wang L, Liu G, Zhang B, Wu W, Zhang S.	Rev Cardiovasc Med		2025
	Exploring the mediating role of the plasma lipidome in the pathway from the gut microbiota to dementia: a Mendelian randomization study.	Li B, Sun X, Luo X, Kan Y, Wang W, Wang T, Wu C, Hu Y, Bi X.	Arch Med Sci	10.5114/aoms/201447	2025
	The nanocomposites of modified attapulgite with vitamin E and mannan oligosaccharide regulated the intestinal epithelial barrier and improved intestinal microbiota composition to prevent diarrhea in weaned piglets.	Zha A, Tan B, Wang J, Qi M, Deng Y, Liao P, Yin Y.	J Sci Food Agric	10.1002/jsfa.12642	2023
Genetics	Early antimicrobial regimen shapes gut microbiota and health trajectories in pigs: a longitudinal study from weaning to finishing.	Correa F, Luise D, Palladino G, Estelle J, Turroni S, Scicchitano D, Babbi G, Rampelli S, Candela M, Martelli PL, Stefanelli C, Perez-Calvo E, Trevisi P.	Anim Microbiome	10.1186/s42523-025-00477-x	2025
	Spraying compound probiotics improves growth performance and immunity and modulates gut microbiota and blood metabolites of suckling piglets.	Huang W, Ma T, Liu Y, Kwok LY, Li Y, Jin H, Zhao F, Shen X, Shi X, Sun Z, Zhang H.	Sci China Life Sci	10.1007/s11427-022-2229-1	2023
	Captive environments reshape the compositions of carbohydrate active enzymes and virulence factors in wolf gut microbiome.	Wang X, Shang Y, Xing Y, Chen Y, Wu X, Zhang H.	BMC Microbiol	10.1186/s12866-025-03863-2	2025
	Exploring the causal associations of the gut microbiota and plasma metabolites with ovarian cancer: an approach of mendelian randomization analysis combined with network pharmacology and molecular docking.	Guo J, Wang C, Li H, Ding C.	J Ovarian Res	10.1186/s13048-025-01610-9	2025
Phylogeny	Species-level verification of Phascolarctobacterium association with colorectal cancer.	Bucher-Johannessen C, Senthakumaran T, Avershina E, Birkeland E, Hoff G, Bemanian V, Tunsjo H, Rounge TB.	mSystems	10.1128/msystems.00734-24	2024
Pathogenicity	High-throughput single-microbe RNA sequencing reveals adaptive state heterogeneity and host-phage activity associations in human gut microbiome.	Shen Y, Qian Q, Ding L, Qu W, Zhang T, Song M, Huang Y, Wang M, Xu Z, Chen J, Dong L, Chen H, Shen E, Zheng S, Chen Y, Liu J, Fan L, Wang Y.	Protein Cell	10.1093/procel/pwae027	2025
Phylogeny	Establishment and development of the gut microbiota in dairy goats during the early life.	Niyazbekova Z, Kassen K, Jiang Y, Li D, Qi Y, Khussainov D, Batanova Z, Chen D, Ma W.	BMC Vet Res	10.1186/s12917-025-04958-8	2025
Pathogenicity	Identification and profiling of novel metagenome assembled uncultivated virus genomes from human gut.	Bhardwaj K, Niharika, Garg A, Jain A, Kumar M, Datt M, Singh V, Vrati S.	Virol J	10.1186/s12985-025-02739-1	2025
	Concentrations of ciprofloxacin in food defined as safe alter the gut microbiome and ciprofloxacin susceptibility in humans: an interventional clinical study.	Manoharan-Basil S, Gestels Z, Abdellati S, Vanbaelen T, Van Den Bossche D, van Alebeek L, Van Herrewege Y, Poppe L, Vandenhove L, Bracke S, Smekens B, Jacobs B, Genbrugge E, Kenyon C.	Sci Rep	10.1038/s41598-025-18714-3	2025
	A taxon-specific measurement of disruption in a multi-modal study of microbiomes and metabolomes reveals system-wide dysbiosis preceding HIV-1 infection.	Fouladi F, Chen Y, Bera S, Jarmusch AK, Van Tyne D, Palella FJ, Margolick JB, Chew KW, Sun J, Martinson J, Rinaldo CR, Peddada SD.	Nat Commun	10.1038/s41467-025-64822-z	2025
Metabolism	Sex-Specific Differences in Gut Microbial Composition and Metabolism of Jiangshan Black Pigs.	Zhang Y, Wu X, Song D, Wang P, Wang H, Li X.	Microorganisms	10.3390/microorganisms13112551	2025
	Study of microbiome changes in patients with ulcerative colitis in the Central European part of Russia	Gryaznova MV, Solodskikh SA, Panevina AV, Syromyatnikov MY, Dvoretskaya YD, Sviridova TN, Popov ES, Popov VN.	Heliyon.		2021
	Intestinal Damages by F18⁺Escherichia coli and Its Amelioration with an Antibacterial Bacitracin Fed to Nursery Pigs.	Duarte ME, Stahl CH, Kim SW.	Antioxidants (Basel)	10.3390/antiox12051040	2023
Genetics	Metabolites of the gut microbiota may serve as precise diagnostic markers for sarcopenia in the elderly.	He Y, Cui W, Fang T, Zhang Z, Zeng M.	Front Microbiol	10.3389/fmicb.2023.1301805	2023
Metabolism	Methanogenesis associated with altered microbial production of short-chain fatty acids and human-host metabolizable energy.	Dirks B, Davis TL, Carnero EA, Corbin KD, Smith SR, Rittmann BE, Krajmalnik-Brown R.	ISME J	10.1093/ismejo/wraf103	2025
	Gut microbiota and physical activity level: characterization from sedentary to soccer players.	Petri C, Mascherini G, Izzicupo P, Rosati D, Cerboneschi M, Smeazzetto S, Arrones LS.	Biol Sport	10.5114/biolsport.2024.134759	2024
	Metagenomic analysis of rats with diarrhea treated with mixed probiotics: response to consecutive and alternate-hour supplementation.	Wang A, Cui X, Shi C.	Transl Pediatr	10.21037/tp-24-129	2024
	Diet- and sex-related changes of gut microbiota composition and functional profiles after 4 months of weight loss intervention.	Cuevas-Sierra A, Romo-Hualde A, Aranaz P, Goni L, Cuervo M, Martinez JA, Milagro FI, Riezu-Boj JI.	Eur J Nutr	10.1007/s00394-021-02508-0	2021
	Microbiota based personalized nutrition improves hyperglycaemia and hypertension parameters and reduces inflammation: a prospective, open label, controlled, randomized, comparative, proof of concept study.	Kallapura G, Prakash AS, Sankaran K, Manjappa P, Chaudhary P, Ambhore S, Dhar D.	PeerJ	10.7717/peerj.17583	2024
Genetics	Structural and functional characterization of gut microbiota in dyslipidemic patients from high-altitude Tibetan pastoral areas.	Chen J, Luo Y, Hao Y, Wang Q, Wang Q.	Front Nutr	10.3389/fnut.2025.1676238	2025
Metabolism	Microbiota and short chain fatty acid relationships underlie clinical heterogeneity and identify key microbial targets in irritable bowel syndrome (IBS).	Shin AS, Xing Y, Waseem MR, Siwiec R, James-Stevenson T, Rogers N, Bohm M, Wo J, Lockett C, Gupta A, Kadariya J, Toh E, Anderson R, Dong A, Xu H, Gao X.	Sci Rep	10.1038/s41598-025-19363-2	2025
Metabolism	Gut microbiome and serum amino acid metabolome alterations in autism spectrum disorder.	Chang X, Zhang Y, Chen X, Li S, Mei H, Xiao H, Ma X, Liu Z, Li R.	Sci Rep	10.1038/s41598-024-54717-2	2024
Genetics	Causal relationships between gut microbiota and depression/anxiety disorders: A 2-sample Mendelian randomization study.	Fan T, Li L, Chen Y.	Medicine (Baltimore)	10.1097/md.0000000000039543	2024
Genetics	Comparison of gut microbiota in male MAFLD patients with varying liver stiffness.	Zhang Y, Yan S, Sheng S, Qin Q, Chen J, Li W, Li T, Gao X, Wang L, Ang L, Ding S.	Front Cell Infect Microbiol	10.3389/fcimb.2022.873048	2022
	The causal relationship between gut microbiota and alopecia areata: a Mendelian randomization analysis.	Bi D, Tey JT, Yao D, Cao Y, Qian M, Shi J, Guo S.	Front Microbiol	10.3389/fmicb.2024.1431646	2024
Phylogeny	Exploring gut microbiota profile induced by antipsychotics in schizophrenic patients: insights from an Eastern European pilot study.	Nita IB, Vacarean-Trandafir IC, Amarandi RM, Ilie OD, Dobrin PR, Bejenariu AC, Ivanov IC, Doroftei B.	BMC Psychiatry	10.1186/s12888-025-07461-4	2025
	Gut microbiota and short chain fatty acid composition as affected by legume type and processing methods as assessed by simulated in vitro digestion assays.	Chen Y, Chang SKC, Zhang Y, Hsu CY, Nannapaneni R.	Food Chem	10.1016/j.foodchem.2019.126040	2020
Phylogeny	Characterization of blood microbial population in beef calves with clinical signs of sepsis using 16S rRNA gene sequencing.	Borriello G, Valentini F, Ferrini S, Di Muro G, Cagnotti G, Grego E, Catania AM, Stella MC, Ala U, Nebbia P, D'Angelo A, Bellino C.	PLoS One	10.1371/journal.pone.0324469	2025
Phylogeny	Long-term follow-up of colorectal cancer screening attendees identifies differences in Phascolarctobacterium spp. using 16S rRNA and metagenome sequencing.	Bucher-Johannessen C, Birkeland EE, Vinberg E, Bemanian V, Hoff G, Berstad P, Rounge TB.	Front Oncol	10.3389/fonc.2023.1183039	2023
	Immune-mediated hematological disease in dogs is associated with alterations of the fecal microbiota: a pilot study.	Liu PY, Liu PY, Xia D, McGonigle K, Carroll AB, Chiango J, Scavello H, Martins R, Mehta S, Krespan E, Lunde E, LeVine D, Fellman CL, Goggs R, Beiting DP, Garden OA.	Anim Microbiome	10.1186/s42523-023-00268-2	2023
	Walnut kernel pellicle polyphenols: subcritical water extraction, digestive characteristics, and their effect on gut microbiota and metabolites.	Yuan X, Feng Q, Wang Q, Wang T, Qiao Z, Pan H, Zhong Y, Zhuang Y.	Food Chem X	10.1016/j.fochx.2025.103020	2025
	An Innovative Approach: The Usage of N-Acetylcysteine in the Therapy of Pneumonia in Neonatal Calves.	Ninkovic M, Zutic J, Tasic A, Arsic S, Bojkovski J, Zdravkovic N.	Animals (Basel)	10.3390/ani14192852	2024
	Comparative analysis of gut microbiota between common (Macaca fascicularis fascicularis) and Burmese (M. f. aurea) long-tailed macaques in different habitats.	Muhammad R, Klomkliew P, Chanchaem P, Sawaswong V, Kaikaew T, Payungporn S, Malaivijitnond S.	Sci Rep	10.1038/s41598-023-42220-z	2023
	To analyze the relationship between gut microbiota, metabolites and migraine: a two-sample Mendelian randomization study.	Qu K, Li MX, Gan L, Cui ZT, Li JJ, Yang R, Dong M.	Front Microbiol	10.3389/fmicb.2024.1325047	2024
Pathogenicity	Abnormal blood microbiota profiles are associated with inflammation and immune restoration in HIV/AIDS individuals.	Guo X, Wang Z, Qu M, Guo Y, Yu M, Hong W, Zhang C, Fan X, Song J, Xu R, Zhang J, Huang H, Linghu E, Wang F-S, Sun L, Jiao Y-M.	mSystems	10.1128/msystems.00467-23	2023
	Fine-tuning of post-weaning pig microbiome structure and functionality by in-feed zinc oxide and antibiotics use.	Ortiz Sanjuan JM, Manzanilla EG, Cabrera-Rubio R, Crispie F, Cotter PD, Garrido JJ, Ekhlas D, O'Neill L, Arguello H.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1354449	2024
Pathogenicity	Chicory supplementation improves growth performance in juvenile ostriches potentially by attenuating enteritis.	Li M, Abouelfetouh MM, Salah E, Kiani FA, Nan S, Ding M, Ding Y.	Front Vet Sci	10.3389/fvets.2024.1432269	2024
	Effects of OsomeFood Clean Label plant-based meals on the gut microbiome.	Jacky D, Bibi C, Meng LMC, Jason F, Gwendoline T, Jeremy L, Wie CC.	BMC Microbiol	10.1186/s12866-023-02822-z	2023
Pathogenicity	Exploration of the Gut Microbiome in Thai Patients with Major Depressive Disorder Shows a Specific Bacterial Profile with Depletion of the Ruminococcus Genus as a Putative Biomarker.	Maes M, Vasupanrajit A, Jirakran K, Klomkliew P, Chanchaem P, Tunvirachaisakul C, Payungporn S.	Cells	10.3390/cells12091240	2023
	Study of microbiome changes in patients with ulcerative colitis in the Central European part of Russia.	Gryaznova MV, Solodskikh SA, Panevina AV, Syromyatnikov MY, Dvoretskaya YD, Sviridova TN, Popov ES, Popov VN.	Heliyon	10.1016/j.heliyon.2021.e06432	2021
	Gut Microbiota, Human Blood Metabolites, and Esophageal Cancer: A Mendelian Randomization Study	Li X, Xu B, Yang H, Zhu Z.	Genes (Basel)		2024
	Improved Anti-Oxidant and Anti-Bacterial Capacities of Skim Milk Fermented by Lactobacillus plantarum.	Wang Y, Zhao B, Ding Y, Liu N, Yang C, Sun Y.	Molecules	10.3390/molecules29163800	2024
	Disturbances in the gut microbiota potentially associated with metabolic syndrome among patients living with HIV-1 and on antiretroviral therapy at Bafoussam Regional Hospital, Cameroon.	Diesse JM, Jadhav S, Tamekou SL, Simo G, Dzoyem JP, Souopgui J, Kuiate JR, Nema V.	Diabetol Metab Syndr	10.1186/s13098-025-01653-4	2025
Genetics	Gut Metagenome Reveals the Microbiome Signatures in Tibetan and Black Pigs.	Bai X, Gu Y, Li D, Li M.	Animals (Basel)	10.3390/ani15050753	2025
	The Microbiome Modulates the Immune System to Influence Cancer Therapy.	Roy R, Singh SK.	Cancers (Basel)	10.3390/cancers16040779	2024
	Characterizing core microbiota and regulatory functions of the pig gut microbiome.	Hu J, Chen J, Ma L, Hou Q, Zhang Y, Kong X, Huang X, Tang Z, Wei H, Wang X, Yan X.	ISME J	10.1093/ismejo/wrad037	2024
	The fecal metabolome and microbiome are altered in dogs with idiopathic epilepsy compared to healthy dogs.	Verdoodt F, Hesta M, Goossens E, Van Immerseel F, Molina J, Van Ham L, Vanhaecke L, Hemeryck LY, Bhatti SFM.	Sci Rep	10.1038/s41598-025-09919-7	2025
	Bioactive phenolic compounds from Australian seaweeds and their impact on gut health.	Subbiah V, Ebrahimi F, Agar OT, Legione AR, Dunshea FR, Barrow CJ, Suleria HAR.	Sci Rep	10.1038/s41598-025-04689-8	2025
	Metagenomic Sequencing Analysis of the Effects of Colistin Sulfate on the Pig Gut Microbiome.	Guo L, Zhang D, Fu S, Zhang J, Zhang X, He J, Peng C, Zhang Y, Qiu Y, Ye C, Liu Y, Wu Z, Hu CA.	Front Vet Sci	10.3389/fvets.2021.663820	2021
	Alteration of gut microbiota in wild-borne long-tailed macaques after 1-year being housed in hygienic captivity.	Sawaswong V, Chanchaem P, Kemthong T, Warit S, Chaiprasert A, Malaivijitnond S, Payungporn S.	Sci Rep	10.1038/s41598-023-33163-6	2023
Genetics	Characterization of gut microbial and metabolite alterations in faeces of Goto Kakizaki rats using metagenomic and untargeted metabolomic approach.	Zhao JD, Sun M, Li Y, Yu CJ, Cheng RD, Wang SH, Du X, Fang ZH.	World J Diabetes	10.4239/wjd.v14.i3.255	2023
	The Impact of Fiber Source on Digestive Function, Fecal Microbiota, and Immune Response in Adult Dogs.	Montserrat-Malagarriga M, Castillejos L, Salas-Mani A, Torre C, Martin-Orue SM.	Animals (Basel)	10.3390/ani14020196	2024
	Metaproteomic portrait of the healthy human gut microbiota.	Tanca A, Palomba A, Fiorito G, Abbondio M, Pagnozzi D, Uzzau S.	NPJ Biofilms Microbiomes	10.1038/s41522-024-00526-4	2024
Pathogenicity	Gut dysbiosis narrative in psoriasis: matched-pair approach identifies only subtle shifts correlated with elevated fecal calprotectin.	Yunusbayev B, Bogdanova A, Nadyrchenko N, Danilov L, Bogdanov V, Sergeev G, Altinbaev R, Bilalov F, Yunusbaeva M.	Microbiol Spectr	10.1128/spectrum.01382-24	2025
	A comprehensive narrative review on precision medicine approach to hypertension: exploring the role of genetics, epigenetics, microbiome, and artificial intelligence.	Sami A, Ashraf R, Nisar S, Mustehsan ZH, Javed MA, Ozsahin DU, Waheed Y.	J Health Popul Nutr	10.1186/s41043-025-01058-z	2025
	Significance of Mucosa-Associated Microbiota and Its Impacts on Intestinal Health of Pigs Challenged with F18⁺E. coli.	Duarte ME, Kim SW.	Pathogens	10.3390/pathogens11050589	2022
	High fat diet is associated with gut microbiota dysbiosis and decreased gut microbial derived metabolites related to metabolic health in young Göttingen Minipigs.	Lutzhoft DO, Baekgard C, Wimborne E, Straarup EM, Pedersen KM, Swann JR, Pedersen HD, Kristensen K, Morgills L, Nielsen DS, Hansen AK, Bracken MK, Cirera S, Christoffersen BO.	PLoS One	10.1371/journal.pone.0298602	2024
	Yeast mannan rich fraction positively influences microbiome uniformity, productivity associated taxa, and lay performance.	Leigh RJ, Corrigan A, Murphy RA, Taylor-Pickard J, Moran CA, Walsh F.	Anim Microbiome	10.1186/s42523-024-00295-7	2024
	Alterations in the Gut Microbiota of Tibetan Patients With Echinococcosis.	Cao D, Pang M, Wu D, Chen G, Peng X, Xu K, Fan H.	Front Microbiol	10.3389/fmicb.2022.860909	2022
	Integrated metagenomic and metabolomic analyses of the effects of total flavonoids of Rhizoma Drynariae on reducing ovariectomized-induced osteoporosis by regulating gut microbiota and related metabolites.	Li Q, Wu X, Niu X, Yu Z, Fang S, Chu X, Zhu J, Song Q, Hou C, Wei X.	PLoS One	10.1371/journal.pone.0317832	2025
	Gut microbiota: a novel strategy affecting atherosclerosis.	Yang L, Yang J, Zhang T, Xie X, Wu Q.	Microbiol Spectr	10.1128/spectrum.00482-24	2025
	Changes in HLA-B27 Transgenic Rat Fecal Microbiota Following Tofacitinib Treatment and Ileocecal Resection Surgery: Implications for Crohn's Disease Management.	Blondeaux A, Valibouze C, Speca S, Rousseaux C, Dubuquoy C, Blanquart H, Zerbib P, Desreumaux P, Foligne B, Titecat M.	Int J Mol Sci	10.3390/ijms25042164	2024
Genetics	Comparison of the composition and function of the gut microbiome in herdsmen from two pasture regions, Hongyuan and Xilingol.	Yang C, Peng C, Jin H, You L, Wang J, Xu H, Sun Z.	Food Sci Nutr	10.1002/fsn3.2290	2021
Phylogeny	Influence of selected dosages of plastic microparticles on the porcine fecal microbiome.	Galecka I, Rychlik A, Calka J.	Sci Rep	10.1038/s41598-024-80337-x	2025
	The Possible Preventative Role of Lactate- and Butyrate-Producing Bacteria in Colorectal Carcinogenesis.	Song CH, Kim N, Nam RH, Choi SI, Jang JY, Kim EH, Choi J, Choi Y, Yoon H, Lee SM, Seok YJ.	Gut Liver	10.5009/gnl230385	2024
	Gut microbiota prevents small intestinal tumor formation due to bile acids in gnotobiotic mice.	Wortmann E, Wylensek D, Basic M, Hermeling S, Bleich A, Haller D, Tolba R, Liebisch G, Janssen KP, Clavel T.	Microbiome Res Rep	10.20517/mrr.2024.20	2024
	Gut microbial signatures are associated with Lynch syndrome (LS) and cancer history in Druze communities in Israel.	Naddaf R, Carasso S, Reznick-Levi G, Hasnis E, Qarawani A, Maza I, Gefen T, Half EE, Geva-Zatorsky N.	Sci Rep	10.1038/s41598-023-47723-3	2023
	Whole-Genome Shotgun Metagenomic Sequencing Reveals Distinct Gut Microbiome Signatures of Obese Cats.	Ma X, Brinker E, Graff EC, Cao W, Gross AL, Johnson AK, Zhang C, Martin DR, Wang X.	Microbiol Spectr	10.1128/spectrum.00837-22	2022
	Genetic- and fiber-diet-mediated changes in virulence factors in pig colon contents and feces and their driving factors.	Wang T, Luo Y, Kong X, Yu B, Zheng P, Huang Z, Mao X, Yu J, Luo J, Yan H, He J.	Front Vet Sci	10.3389/fvets.2024.1351962	2024
Phylogeny	Lower Genital Tract Microbiome in Early Pregnancy in the Eastern European Population.	Gryaznova M, Lebedeva O, Kozarenko O, Smirnova Y, Burakova I, Syromyatnikov M, Maslov A, Popov V.	Microorganisms	10.3390/microorganisms10122368	2022
Genetics	Characteristics of the Fecal Microbiome of Piglets with Diarrhea Identified Using Shotgun Metagenomics Sequencing.	Gryaznova M, Smirnova Y, Burakova I, Morozova P, Nesterova E, Gladkikh M, Mikhaylov E, Syromyatnikov M.	Animals (Basel)	10.3390/ani13142303	2023
Phylogeny	Comparison of gut microbiota between adults with autism spectrum disorder and obese adults.	Zhang Q, Zou R, Guo M, Duan M, Li Q, Zheng H.	PeerJ	10.7717/peerj.10946	2021
	Impact of urbanization on gut microbiome mosaics across geographic and dietary contexts.	Vinogradova E, Mukhanbetzhanov N, Nurgaziyev M, Jarmukhanov Z, Aipova R, Sailybayeva A, Bekbossynova M, Kozhakhmetov S, Kushugulova A.	mSystems	10.1128/msystems.00585-24	2024
Enzymology	Functional diversity of microbial ecologies estimated from ancient human coprolites and dental calculus.	Jacobson DK, Honap TP, Monroe C, Lund J, Houk BA, Novotny AC, Robin C, Marini E, Lewis CM.	Philos Trans R Soc Lond B Biol Sci	10.1098/rstb.2019.0586	2020
	Unveiling the connection between gut microbiome and metabolic health in individuals with chronic spinal cord injury.	Li J, Barnes S, Lefkowitz E, Yarar-Fisher C.	Physiol Genomics	10.1152/physiolgenomics.00107.2023	2024
Phylogeny	From mother to piglet: the lasting influence of the maternal microbiome.	Tancredi A, Matthijs T, Cox E, Van Immerseel F, Goossens E.	Anim Microbiome	10.1186/s42523-025-00420-0	2025
	Dissecting the Effect of Berberine on the Intestinal Microbiome in the Weaned Piglets by Metagenomic Sequencing.	Hu H, Xu K, Wang K, Zhang F, Bai X.	Front Microbiol	10.3389/fmicb.2022.862882	2022
	Gut Microbiome Interactions with Oxidative Stress: Mechanisms and Consequences for Health.	Semenova N, Garashchenko N, Kolesnikov S, Darenskaya M, Kolesnikova L.	Pathophysiology	10.3390/pathophysiology31030023	2024
Genetics	Gut virome alterations in patients with chronic obstructive pulmonary disease.	Liu Y, Huang Q, Zhuang Z, Yang H, Gou X, Xu T, Liu K, Wang J, Liu B, Gao P, Cao F, Yang B, Zhang C, Chen M, Fan G.	Microbiol Spectr	10.1128/spectrum.04287-23	2024
	An In Vitro Protocol to Study the Modulatory Effects of a Food or Biocompound on Human Gut Microbiome and Metabolome.	Roses C, Nieto JA, Viadel B, Gallego E, Romo-Hualde A, Streitenberger S, Milagro FI, Barcelo A.	Foods	10.3390/foods10123020	2021
	A powerful machine learning approach to identify interactions of differentially abundant gut microbial subsets in patients with metastatic and non-metastatic pancreatic cancer.	Villani A, Fontana A, Panebianco C, Ferro C, Copetti M, Pavlovic R, Drago D, Fiorentini C, Terracciano F, Bazzocchi F, Canistro G, Pisati F, Maiello E, Latiano TP, Perri F, Pazienza V.	Gut Microbes	10.1080/19490976.2024.2375483	2024
Pathogenicity	Oral Supplements of Combined Bacillus licheniformis Zhengchangsheng® and Xylooligosaccharides Improve High-Fat Diet-Induced Obesity and Modulate the Gut Microbiota in Rats.	Li Y, Liu M, Liu H, Wei X, Su X, Li M, Yuan J.	Biomed Res Int	10.1155/2020/9067821	2020
	Diabetes and gut microbiota.	Xi Y, Xu PF.	World J Diabetes	10.4239/wjd.v12.i10.1693	2021
	Association between gut microbiota and gastrointestinal cancer: a two-sample bi-directional Mendelian randomization study.	Su Q, Jin C, Bo Z, Yang Y, Wang J, Wang J, Zhou J, Chen Y, Zeng H, Chen G, Wang Y.	Front Microbiol	10.3389/fmicb.2023.1181328	2023
Pathogenicity	Gut Microbiome dysbiosis and immune activation correlate with somatic and neuropsychiatric symptoms in COVID-19 patients.	Scalzo PL, Marshall AG, Soriano S, Curry K, Dulay M, Hodics T, Quigley EMM, Treangen TJ, Piskorz MM, Villapol S.	J Transl Med	10.1186/s12967-025-06348-y	2025
Metabolism	Maternal balanced energy-protein supplementation reshapes the maternal gut microbiome and enhances carbohydrate metabolism in infants: a randomized controlled trial.	Deng L, Taelman S, Olm MR, Toe LC, Balini E, Ouedraogo LO, Bastos-Moreira Y, Argaw A, Tesfamariam K, Sonnenburg ED, Hanley-Cook GT, Ouedraogo M, Ganaba R, Van Criekinge W, Huybregts L, Stock M, Kolsteren P, Sonnenburg JL, Lachat C, Dailey-Chwalibog T.	Nat Commun	10.1038/s41467-025-57838-y	2025
	Correlation Between Fecal Microbiota and Corticosteroid Responsiveness in Primary Immune Thrombocytopenia: an Exploratory Study.	Liu FQ, An ZY, Cui LJ, Xiao MY, Wu YJ, Li W, Zhang BS, Yu L, Feng J, Liu ZG, Feng R, Jiang ZX, Huang RB, Jing HM, Ren JH, Zhu XY, Cheng YF, Li YH, Zhou HB, Gao D, Liu Y, Yu F, Wang X, Qiao JL, Hu DH, Wang LL, Zang MT, Chen Q, Qu QY, Zhou JY, Li ML, Chen YX, Huang QS, Fu HX, Li YY, Wang QF, Huang XJ, Zhang XH, Cooperative ITP Working Group.	Adv Sci (Weinh)	10.1002/advs.202410417	2025
	Intestinal microbiota links to allograft stability after lung transplantation: a prospective cohort study.	Wu J, Li C, Gao P, Zhang C, Zhang P, Zhang L, Dai C, Zhang K, Shi B, Liu M, Zheng J, Pan B, Chen Z, Zhang C, Liao W, Pan W, Fang W, Chen C.	Signal Transduct Target Ther	10.1038/s41392-023-01515-3	2023
	Metagenomic sequencing identified microbial species in the rumen and cecum microbiome responsible for niacin treatment and related to intramuscular fat content in finishing cattle.	Yang Z, Chen X, Yu M, Jing R, Bao L, Zhao X, Pan K, Chao B, Qu M.	Front Microbiol	10.3389/fmicb.2024.1334068	2024
	Dysbiosis of gut microbiota inhibits NMNAT2 to promote neurobehavioral deficits and oxidative stress response in the 6-OHDA-lesioned rat model of Parkinson's disease.	Yu J, Meng J, Qin Z, Yu Y, Liang Y, Wang Y, Min D.	J Neuroinflammation	10.1186/s12974-023-02782-1	2023
	The Effect of Indole-3-Lactic Acid from Lactiplantibacillus plantarum ZJ316 on Human Intestinal Microbiota In Vitro.	Zhou Q, Xie Z, Wu D, Liu L, Shi Y, Li P, Gu Q.	Foods	10.3390/foods11203302	2022
Genetics	Guild-level signature of gut microbiome for diabetic kidney disease.	Tang S, Wu G, Liu Y, Xue B, Zhang S, Zhang W, Jia Y, Xie Q, Liang C, Wang L, Heng H, Wei W, Shi X, Hu Y, Yang J, Zhao L, Wang X, Zhao L, Yuan H.	mBio	10.1128/mbio.00735-24	2024
Phylogeny	Full-length 16S rDNA sequencing based on Oxford Nanopore Technologies revealed the association between gut-pharyngeal microbiota and tuberculosis in cynomolgus macaques.	Sawaswong V, Chanchaem P, Klomkliew P, Rotcheewaphan S, Meesawat S, Kemthong T, Kaewparuehaschai M, Noradechanon K, Ekatat M, Kanitpun R, Srilohasin P, Warit S, Chaiprasert A, Malaivijitnond S, Payungporn S.	Sci Rep	10.1038/s41598-024-53880-w	2024
Phenotype	Compositional changes in fecal microbiota associated with clinical phenotypes and prognosis in Korean patients with inflammatory bowel disease.	Shin SY, Kim Y, Kim WS, Moon JM, Lee KM, Jung SA, Park H, Huh EY, Kim BC, Lee SC, Choi CH, IBD Research Group of the Korean Association for the Study of Intestinal Diseases.	Intest Res	10.5217/ir.2021.00168	2023
	Fecal microbiota transplantation is safe and tolerable in patients with multiple sclerosis: A pilot randomized controlled trial.	Al KF, Craven LJ, Gibbons S, Parvathy SN, Wing AC, Graf C, Parham KA, Kerfoot SM, Wilcox H, Burton JP, Kremenchutzky M, Morrow SA, Casserly C, Meddings J, Sharma M, Silverman MS.	Mult Scler J Exp Transl Clin	10.1177/20552173221086662	2022
Pathogenicity	Interactions among the mycobiome, bacteriome, inflammation, and diet in people living with HIV.	Gosalbes MJ, Jimenez-Hernandez N, Moreno E, Artacho A, Pons X, Ruiz-Perez S, Navia B, Estrada V, Manzano M, Talavera-Rodriguez A, Madrid N, Vallejo A, Luna L, Perez-Molina JA, Moreno S, Serrano-Villar S.	Gut Microbes	10.1080/19490976.2022.2089002	2022
Genetics	ContScout: sensitive detection and removal of contamination from annotated genomes.	Balint B, Merenyi Z, Hegedus B, Grigoriev IV, Hou Z, Foldi C, Nagy LG.	Nat Commun	10.1038/s41467-024-45024-5	2024
	Captivity Influences the Gut Microbiome of Rhinopithecus roxellana.	Wang X, Wang Z, Pan H, Qi J, Li D, Zhang L, Shen Y, Xiang Z, Li M.	Front Microbiol	10.3389/fmicb.2021.763022	2021
	In Vitro Digestion and Fecal Fermentation of Peach Gum Polysaccharides with Different Molecular Weights and Their Impacts on Gut Microbiota.	Wei C, Yao L, Zhang L, Zhang Y, Luo Q, Qiu S, Zeng X, Chen S, Ye X.	Foods	10.3390/foods11243970	2022
Metabolism	Taeniasis impacts human gut microbiome composition and function.	Mu W, Ma P, Wang Y, Li Y, Ding Y, Zou Y, Pu L, Yan Q, Kong H, Guo X, Guo A, Li H, Wang S.	ISME J	10.1093/ismejo/wrae213	2024
	Interspecies variation in hominid gut microbiota controls host gene regulation.	Muehlbauer AL, Richards AL, Alazizi A, Burns MB, Gomez A, Clayton JB, Petrzelkova K, Cascardo C, Resztak J, Wen X, Pique-Regi R, Luca F, Blekhman R.	Cell Rep	10.1016/j.celrep.2021.110057	2021
	Host microbiome in tuberculosis: disease, treatment, and immunity perspectives.	Pant A, Das B, Arimbasseri GA.	Front Microbiol	10.3389/fmicb.2023.1236348	2023
	Gut and Reproductive Tract Microbiota Adaptation during Pregnancy: New Insights for Pregnancy-Related Complications and Therapy.	Siena M, Laterza L, Matteo MV, Mignini I, Schepis T, Rizzatti G, Ianiro G, Rinninella E, Cintoni M, Gasbarrini A, Gasbarrini A.	Microorganisms	10.3390/microorganisms9030473	2021
	Gut microbiota links to serum ferritin and cognition.	Rosell-Diaz M, Santos-Gonzalez E, Motger-Alberti A, Ramio-Torrenta L, Garre-Olmo J, Perez-Brocal V, Moya A, Jove M, Pamplona R, Puig J, Ramos R, Fernandez-Real JM, Mayneris-Perxachs J.	Gut Microbes	10.1080/19490976.2023.2290318	2023
Pathogenicity	Gut microbiota-derived short chain fatty acids are potential mediators in gut inflammation.	Akhtar M, Chen Y, Ma Z, Zhang X, Shi D, Khan JA, Liu H.	Anim Nutr	10.1016/j.aninu.2021.11.005	2022
Pathogenicity	Combined probiotics with vitamin D₃ supplementation improved aerobic performance and gut microbiome composition in mixed martial arts athletes.	Przewlocka K, Folwarski M, Kaczmarczyk M, Skonieczna-Zydecka K, Palma J, Bytowska ZK, Kujach S, Kaczor JJ.	Front Nutr	10.3389/fnut.2023.1256226	2023
Pathogenicity	Gut microbiota composition is altered in postural orthostatic tachycardia syndrome and post-acute COVID-19 syndrome.	Hamrefors V, Kahn F, Holmqvist M, Carlson K, Varjus R, Gudjonsson A, Fedorowski A, Ohlsson B.	Sci Rep	10.1038/s41598-024-53784-9	2024
Genetics	Taxonomic and Functional Shifts in the Perinatal Gut Microbiome of Rhesus Macaques.	Rhoades NS, Cinco IR, Hendrickson SM, Slifka MK, Messaoudi I.	Microbiol Spectr	10.1128/spectrum.00814-22	2022
Genetics	Integrated metagenomics and targeted-metabolomics analysis of the effects of phenylalanine on loperamide-induced constipation in rats.	Yang C, Bai X, Hu T, Xue X, Su X, Zhang X, Wu T, Zhang M, Shen X, Dong X.	Front Microbiol	10.3389/fmicb.2022.1018008	2022
	Bridging the Gap from Enterotypes to Personalized Dietary Recommendations: A Metabolomics Perspective on Microbiome Research.	Bartsch M, Hahn A, Berkemeyer S.	Metabolites	10.3390/metabo13121182	2023
	Rifaximin Protects against Malathion-Induced Rat Testicular Toxicity: A Possible Clue on Modulating Gut Microbiome and Inhibition of Oxidative Stress by Mitophagy.	Omar NN, Mosbah RA, Sarawi WS, Rashed MM, Badr AM.	Molecules	10.3390/molecules27134069	2022
	Tumor bacterial markers diagnose the initiation and four stages of colorectal cancer.	Cai P, Xiong J, Sha H, Dai X, Lu J.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1123544	2023
Genetics	Novel Insights into the Pig Gut Microbiome Using Metagenome-Assembled Genomes.	Holman DB, Kommadath A, Tingley JP, Abbott DW.	Microbiol Spectr	10.1128/spectrum.02380-22	2022
	Microbial inactivation in fresh and minimally processed foods by intense pulsed light (IPL) treatment.	Hwang HJ, Park JY, Chung MS, Cheigh CI.	Food Sci Biotechnol	10.1007/s10068-021-00937-5	2021
Metabolism	Effects of fermentation conditions and soybean peptide supplementation on hyaluronic acid production by Streptococcus thermophilus strain YIT 2084 in milk.	Izawa N, Hanamizu T, Sone T, Chiba K.	J Biosci Bioeng	10.1016/j.jbiosc.2009.10.011	2010
Metabolism	Normal variation of the gut microbiota affects hepatic cytochrome P450 activity in mice.	Togao M, Tajima S, Kurakawa T, Wagai G, Otsuka J, Kado S, Kawakami K.	Pharmacol Res Perspect	10.1002/prp2.893	2021
	Modulation of the gut microbiome with nisin.	O'Reilly C, Grimaud GM, Coakley M, O'Connor PM, Mathur H, Peterson VL, O'Donovan CM, Lawlor PG, Cotter PD, Stanton C, Rea MC, Hill C, Ross RP.	Sci Rep	10.1038/s41598-023-34586-x	2023
	Age Rather Than Supplementation with Oat beta-Glucan Influences Development of the Intestinal Microbiota and SCFA Concentrations in Suckling Piglets.	Arapovic L, Huang Y, Manell E, Verbeek E, Keeling L, Sun L, Landberg R, Lundh T, Lindberg JE, Dicksved J.	Animals (Basel)	10.3390/ani13081349	2023
Genetics	Alterations in the intestinal microbiome and metabolic profile of patients with cirrhosis supplemented with lactulose, Clostridium butyricum, and Bifidobacterium longum infantis: a randomized placebo-controlled trial.	Lu H, Zhu X, Wu L, Lou X, Pan X, Liu B, Zhang H, Zhu L, Li L, Wu Z.	Front Microbiol	10.3389/fmicb.2023.1169811	2023
	Integrative metagenomic and metabolomic analyses reveal the potential of gut microbiota to exacerbate acute pancreatitis.	Liu J, Yan Q, Li S, Jiao J, Hao Y, Zhang G, Zhang Q, Luo F, Zhang Y, Lv Q, Zhang W, Zhang A, Song H, Xin Y, Ma Y, Owusu L, Ma X, Yin P, Shang D.	NPJ Biofilms Microbiomes	10.1038/s41522-024-00499-4	2024
	Gut microbiota diversity and composition in predicting immunotherapy response and immunotherapy-related colitis in melanoma patients: A systematic review.	Oey O, Liu YY, Sunjaya AF, Simadibrata DM, Khattak MA, Gray E.	World J Clin Oncol	10.5306/wjco.v13.i11.929	2022
	The Role of Fecal Microbiota Transplantation in the Treatment of Neurodegenerative Diseases: A Review.	Matheson JT, Holsinger RMD.	Int J Mol Sci	10.3390/ijms24021001	2023
	beta-mannanase supplemented in diets saved 85 to 100 kcal of metabolizable energy/kg, supporting growth performance and improving nutrient digestibility in grower pigs.	Genova JL, Azevedo LB, Rupolo PE, Cordeiro FBC, Vilela HLO, Careli PS, de Castro Fidelis Toledo D, Carvalho ST, Kipper M, Renno LN, Faveri JC, de Oliveira Carvalho PL.	Sci Rep	10.1038/s41598-023-38776-5	2023
	Rhubarb Enema Increasing Short-Chain Fatty Acids that Improves the Intestinal Barrier Disruption in CKD May Be Related to the Regulation of Gut Dysbiosis.	Ji C, Lu F, Wu Y, Lu Z, Mo Y, Han L, Lin Q, Liu X, Zou C.	Biomed Res Int	10.1155/2022/1896781	2022
Genetics	Metagenome of Gut Microbiota of Children With Nonalcoholic Fatty Liver Disease.	Zhao Y, Zhou J, Liu J, Wang Z, Chen M, Zhou S.	Front Pediatr	10.3389/fped.2019.00518	2019
Metabolism	Microbial interaction between the succinate-utilizing bacterium Phascolarctobacterium faecium and the gut commensal Bacteroides thetaiotaomicron.	Ikeyama N, Murakami T, Toyoda A, Mori H, Iino T, Ohkuma M, Sakamoto M.	Microbiologyopen	10.1002/mbo3.1111	2020
	Extracellular succinate induces spatially organized biofilm formation in Clostridioides difficile.	Auria E, Deschamps J, Briandet R, Dupuy B.	Biofilm	10.1016/j.bioflm.2023.100125	2023
Enzymology	beta-mannanase supplementation in diets reduced in 85 kcal metabolizable energy/kg containing xylanase-phytase improves gain to feed ratio, nutrient usage, and backfat thickness in finisher pigs.	Genova JL, Rupolo PE, de Azevedo LB, Henz D, Carvalho ST, Kipper M, Goncalves GAC, Vilela HLO, Pasquetti TJ, de Oliveira NTE, Dietrich ARM, Carvalho PLO.	Front Vet Sci	10.3389/fvets.2023.1144692	2023
Metabolism	A Comprehensive Analysis of the Colonic Flora Diversity, Short Chain Fatty Acid Metabolism, Transcripts, and Biochemical Indexes in Heat-Stressed Pigs.	Hu C, Niu X, Chen S, Wen J, Bao M, Mohyuddin SG, Yong Y, Liu X, Wu L, Yu Z, Ma X, Ju X.	Front Immunol	10.3389/fimmu.2021.717723	2021
Phylogeny	Gut microbiota is associated with differential metabolic characteristics: A study on a defined cohort of Africans and Chinese.	Nizigiyimana P, Xu B, Liu L, Luo L, Liu T, Jiang M, Liu Z, Li C, Luo X, Lei M.	Front Endocrinol (Lausanne)	10.3389/fendo.2022.942383	2022
Genetics	Dysbiosis and relapse-related microbiome in inflammatory bowel disease: A shotgun metagenomic approach.	Serrano-Gomez G, Mayorga L, Oyarzun I, Roca J, Borruel N, Casellas F, Varela E, Pozuelo M, Machiels K, Guarner F, Vermeire S, Manichanh C.	Comput Struct Biotechnol J	10.1016/j.csbj.2021.11.037	2021
Pathogenicity	Succinate metabolism and its regulation of host-microbe interactions.	Wei YH, Ma X, Zhao JC, Wang XQ, Gao CQ.	Gut Microbes	10.1080/19490976.2023.2190300	2023
	Gut microbiome transitions across generations in different ethnicities in an urban setting-the HELIUS study.	van der Vossen EWJ, Davids M, Bresser LRF, Galenkamp H, van den Born BH, Zwinderman AH, Levin E, Nieuwdorp M, de Goffau MC.	Microbiome	10.1186/s40168-023-01488-z	2023
Genetics	Weaning Age and Its Effect on the Development of the Swine Gut Microbiome and Resistome.	Holman DB, Gzyl KE, Mou KT, Allen HK.	mSystems	10.1128/msystems.00682-21	2021
Phylogeny	Primary progressive multiple sclerosis in a Russian cohort: relationship with gut bacterial diversity.	Kozhieva M, Naumova N, Alikina T, Boyko A, Vlassov V, Kabilov MR.	BMC Microbiol	10.1186/s12866-019-1685-2	2019
	Gut microbiota-derived LCA mediates the protective effect of PEDV infection in piglets.	Xing JH, Niu TM, Zou BS, Yang GL, Shi CW, Yan QS, Sun MJ, Yu T, Zhang SM, Feng XZ, Fan SH, Huang HB, Wang JH, Li MH, Jiang YL, Wang JZ, Cao X, Wang N, Zeng Y, Hu JT, Zhang D, Sun WS, Yang WT, Wang CF.	Microbiome	10.1186/s40168-023-01734-4	2024
Genetics	Enhanced intestinal protein fermentation in schizophrenia.	Liang Y, Shi X, Shen Y, Huang Z, Wang J, Shao C, Chu Y, Chen J, Yu J, Kang Y.	BMC Med	10.1186/s12916-022-02261-z	2022
Genetics	Methane-yielding microbial communities processing lactate-rich substrates: a piece of the anaerobic digestion puzzle.	Detman A, Mielecki D, Plesniak L, Bucha M, Janiga M, Matyasik I, Chojnacka A, Jedrysek MO, Blaszczyk MK, Sikora A.	Biotechnol Biofuels	10.1186/s13068-018-1106-z	2018
	Carbohydrate Staple Food Modulates Gut Microbiota of Mongolians in China.	Li J, Hou Q, Zhang J, Xu H, Sun Z, Menghe B, Zhang H.	Front Microbiol	10.3389/fmicb.2017.00484	2017
	Bacterial communities found in placental tissues are associated with severe chorioamnionitis and adverse birth outcomes.	Doyle RM, Harris K, Kamiza S, Harjunmaa U, Ashorn U, Nkhoma M, Dewey KG, Maleta K, Ashorn P, Klein N.	PLoS One	10.1371/journal.pone.0180167	2017
Genetics	Multi-omics analyses reveal the specific changes in gut metagenome and serum metabolome of patients with polycystic ovary syndrome.	Yang Z, Fu H, Su H, Cai X, Wang Y, Hong Y, Hu J, Xie Z, Wang X.	Front Microbiol	10.3389/fmicb.2022.1017147	2022
	Multi-omics profiles of the intestinal microbiome in irritable bowel syndrome and its bowel habit subtypes.	Jacobs JP, Lagishetty V, Hauer MC, Labus JS, Dong TS, Toma R, Vuyisich M, Naliboff BD, Lackner JM, Gupta A, Tillisch K, Mayer EA.	Microbiome	10.1186/s40168-022-01450-5	2023
	CMG-biotools, a free workbench for basic comparative microbial genomics.	Vesth T, Lagesen K, Acar O, Ussery D.	PLoS One	10.1371/journal.pone.0060120	2013
Metabolism	Phylogenetic distribution of three pathways for propionate production within the human gut microbiota.	Reichardt N, Duncan SH, Young P, Belenguer A, McWilliam Leitch C, Scott KP, Flint HJ, Louis P.	ISME J	10.1038/ismej.2014.14	2014
Metabolism	Engraftment of strictly anaerobic oxygen-sensitive bacteria in irritable bowel syndrome patients following fecal microbiota transplantation does not improve symptoms.	Browne PD, Cold F, Petersen AM, Halkjaer SI, Christensen AH, Gunther S, Hestbjerg Hansen L.	Gut Microbes	10.1080/19490976.2021.1927635	2021
	Baseline gut microbiome composition predicts metformin therapy short-term efficacy in newly diagnosed type 2 diabetes patients.	Elbere I, Silamikelis I, Dindune II, Kalnina I, Briviba M, Zaharenko L, Silamikele L, Rovite V, Gudra D, Konrade I, Sokolovska J, Pirags V, Klovins J.	PLoS One	10.1371/journal.pone.0241338	2020
	Neoadjuvant Durvalumab Alone or Combined with Novel Immuno-Oncology Agents in Resectable Lung Cancer: The Phase II NeoCOAST Platform Trial.	Cascone T, Kar G, Spicer JD, Garcia-Campelo R, Weder W, Daniel DB, Spigel DR, Hussein M, Mazieres J, Oliveira J, Yau EH, Spira AI, Anagnostou V, Mager R, Hamid O, Cheng LY, Zheng Y, Blando J, Tan TH, Surace M, Rodriguez-Canales J, Gopalakrishnan V, Sellman BR, Grenga I, Soo-Hoo Y, Kumar R, McGrath L, Forde PM.	Cancer Discov	10.1158/2159-8290.cd-23-0436	2023
Metabolism	Gut microbiota determines the fate of dietary fiber-targeted interventions in host health.	Wang W, Fan Z, Yan Q, Pan T, Luo J, Wei Y, Li B, Fang Z, Lu W.	Gut Microbes	10.1080/19490976.2024.2416915	2024
Genetics	Probiotics maintain the intestinal microbiome homeostasis of the sailors during a long sea voyage.	Zhang J, Zhao J, Jin H, Lv R, Shi H, De G, Yang B, Sun Z, Zhang H.	Gut Microbes	10.1080/19490976.2020.1722054	2020
	Expanded catalog of microbial genes and metagenome-assembled genomes from the pig gut microbiome.	Chen C, Zhou Y, Fu H, Xiong X, Fang S, Jiang H, Wu J, Yang H, Gao J, Huang L.	Nat Commun	10.1038/s41467-021-21295-0	2021
Phylogeny	Changes in Intestinal Microbiota and Predicted Metabolic Pathways During Colonic Fermentation of Mango (Mangifera indica L.)-Based Bar Indigestible Fraction.	Gutierrez-Sarmiento W, Sayago-Ayerdi SG, Goni I, Gutierrez-Miceli FA, Abud-Archila M, Rejon-Orantes JDC, Rincon-Rosales R, Pena-Ocana BA, Ruiz-Valdiviezo VM.	Nutrients	10.3390/nu12030683	2020
Genetics	Metagenomic Characterization of Intestinal Regions in Pigs With Contrasting Feed Efficiency.	Quan J, Wu Z, Ye Y, Peng L, Wu J, Ruan D, Qiu Y, Ding R, Wang X, Zheng E, Cai G, Huang W, Yang J.	Front Microbiol	10.3389/fmicb.2020.00032	2020
	Gut microbiome meta-analysis reveals dysbiosis is independent of body mass index in predicting risk of obesity-associated CRC.	Greathouse KL, White JR, Padgett RN, Perrotta BG, Jenkins GD, Chia N, Chen J.	BMJ Open Gastroenterol	10.1136/bmjgast-2018-000247	2019
Genetics	Can Targeting Non-Contiguous V-Regions With Paired-End Sequencing Improve 16S rRNA-Based Taxonomic Resolution of Microbiomes?: An In Silico Evaluation.	Pinna NK, Dutta A, Monzoorul Haque M, Mande SS.	Front Genet	10.3389/fgene.2019.00653	2019
Metabolism	Gut microbiota modulation with long-chain corn bran arabinoxylan in adults with overweight and obesity is linked to an individualized temporal increase in fecal propionate.	Nguyen NK, Deehan EC, Zhang Z, Jin M, Baskota N, Perez-Munoz ME, Cole J, Tuncil YE, Seethaler B, Wang T, Laville M, Delzenne NM, Bischoff SC, Hamaker BR, Martinez I, Knights D, Bakal JA, Prado CM, Walter J.	Microbiome	10.1186/s40168-020-00887-w	2020
Metabolism	Community Metabolic Interactions, Vitamin Production and Prebiotic Potential of Medicinal Herbs Used for Immunomodulation.	Peterson CT, Iablokov SN, Uchitel S, Chopra D, Perez-Santiago J, Rodionov DA, Peterson SN.	Front Genet	10.3389/fgene.2021.584197	2021
	Stool microRNA profiles reflect different dietary and gut microbiome patterns in healthy individuals.	Tarallo S, Ferrero G, De Filippis F, Francavilla A, Pasolli E, Panero V, Cordero F, Segata N, Grioni S, Pensa RG, Pardini B, Ercolini D, Naccarati A.	Gut	10.1136/gutjnl-2021-325168	2022
Pathogenicity	Practical implications of erythromycin resistance gene diversity on surveillance and monitoring of resistance.	Choi J, Rieke EL, Moorman TB, Soupir ML, Allen HK, Smith SD, Howe A.	FEMS Microbiol Ecol	10.1093/femsec/fiy006	2018
	Alterations of host-gut microbiome interactions in multiple sclerosis.	Cantoni C, Lin Q, Dorsett Y, Ghezzi L, Liu Z, Pan Y, Chen K, Han Y, Li Z, Xiao H, Gormley M, Liu Y, Bokoliya S, Panier H, Suther C, Evans E, Deng L, Locca A, Mikesell R, Obert K, Newland P, Wu Y, Salter A, Cross AH, Tarr PI, Lovett-Racke A, Piccio L, Zhou Y.	EBioMedicine	10.1016/j.ebiom.2021.103798	2022
Pathogenicity	Antibiotic treatment for Tuberculosis induces a profound dysbiosis of the microbiome that persists long after therapy is completed.	Wipperman MF, Fitzgerald DW, Juste MAJ, Taur Y, Namasivayam S, Sher A, Bean JM, Bucci V, Glickman MS.	Sci Rep	10.1038/s41598-017-10346-6	2017
	Non-small cell lung cancer microbiota characterization: Prevalence of enteric and potentially pathogenic bacteria in cancer tissues.	Dumont-Leblond N, Veillette M, Racine C, Joubert P, Duchaine C.	PLoS One	10.1371/journal.pone.0249832	2021
Pathogenicity	Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms.	Sun J, Liao XP, D'Souza AW, Boolchandani M, Li SH, Cheng K, Luis Martinez J, Li L, Feng YJ, Fang LX, Huang T, Xia J, Yu Y, Zhou YF, Sun YX, Deng XB, Zeng ZL, Jiang HX, Fang BH, Tang YZ, Lian XL, Zhang RM, Fang ZW, Yan QL, Dantas G, Liu YH.	Nat Commun	10.1038/s41467-020-15222-y	2020
	Cross-cohort gut microbiome associations with immune checkpoint inhibitor response in advanced melanoma.	Lee KA, Thomas AM, Bolte LA, Bjork JR, de Ruijter LK, Armanini F, Asnicar F, Blanco-Miguez A, Board R, Calbet-Llopart N, Derosa L, Dhomen N, Brooks K, Harland M, Harries M, Leeming ER, Lorigan P, Manghi P, Marais R, Newton-Bishop J, Nezi L, Pinto F, Potrony M, Puig S, Serra-Bellver P, Shaw HM, Tamburini S, Valpione S, Vijay A, Waldron L, Zitvogel L, Zolfo M, de Vries EGE, Nathan P, Fehrmann RSN, Bataille V, Hospers GAP, Spector TD, Weersma RK, Segata N.	Nat Med	10.1038/s41591-022-01695-5	2022
Enzymology	Screening of Probiotic Candidates in Human Oral Bacteria for the Prevention of Dental Disease.	Terai T, Okumura T, Imai S, Nakao M, Yamaji K, Ito M, Nagata T, Kaneko K, Miyazaki K, Okada A, Nomura Y, Hanada N.	PLoS One	10.1371/journal.pone.0128657	2015
	The Common Gut Microbe Eubacterium hallii also Contributes to Intestinal Propionate Formation.	Engels C, Ruscheweyh HJ, Beerenwinkel N, Lacroix C, Schwab C.	Front Microbiol	10.3389/fmicb.2016.00713	2016
Metabolism	16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics.	Peterson CT, Sharma V, Iablokov SN, Albayrak L, Khanipov K, Uchitel S, Chopra D, Mills PJ, Fofanov Y, Rodionov DA, Peterson SN.	PLoS One	10.1371/journal.pone.0213869	2019
Genetics	Microbiome Analysis for Wastewater Surveillance during COVID-19.	Brumfield KD, Leddy M, Usmani M, Cotruvo JA, Tien CT, Dorsey S, Graubics K, Fanelli B, Zhou I, Registe N, Dadlani M, Wimalarante M, Jinasena D, Abayagunawardena R, Withanachchi C, Huq A, Jutla A, Colwell RR.	mBio	10.1128/mbio.00591-22	2022
Genetics	The impact of sequence database choice on metaproteomic results in gut microbiota studies.	Tanca A, Palomba A, Fraumene C, Pagnozzi D, Manghina V, Deligios M, Muth T, Rapp E, Martens L, Addis MF, Uzzau S.	Microbiome	10.1186/s40168-016-0196-8	2016
Biotechnology	Lifestyle and the presence of helminths is associated with gut microbiome composition in Cameroonians.	Rubel MA, Abbas A, Taylor LJ, Connell A, Tanes C, Bittinger K, Ndze VN, Fonsah JY, Ngwang E, Essiane A, Fokunang C, Njamnshi AK, Bushman FD, Tishkoff SA.	Genome Biol	10.1186/s13059-020-02020-4	2020
	Microbial Mechanistic Insight into the Role of Inulin in Improving Maternal Health in a Pregnant Sow Model.	Zhou P, Zhao Y, Zhang P, Li Y, Gui T, Wang J, Jin C, Che L, Li J, Lin Y, Xu S, Feng B, Fang Z, Wu.	Front Microbiol	10.3389/fmicb.2017.02242	2017
Enzymology	Quantitative detection of viable Bifidobacterium bifidum BF-1 cells in human feces by using propidium monoazide and strain-specific primers.	Fujimoto J, Watanabe K.	Appl Environ Microbiol	10.1128/aem.03294-12	2013
	Proteomic indicators of oxidation and hydration state in colorectal cancer.	Dick JM.	PeerJ	10.7717/peerj.2238	2016
Enzymology	Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human feces.	Matsuki T, Watanabe K, Fujimoto J, Takada T, Tanaka R.	Appl Environ Microbiol	10.1128/aem.70.12.7220-7228.2004	2004
	Flavobacterium okayamense sp. nov. isolated from surface seawater.	Kitahara K, Muzembo BA, Morohoshi S, Kunihiro T, Tazato N, Ohno A, Uesaka K, Taniguchi M, Miyoshi SI.	Arch Microbiol	10.1007/s00203-023-03682-x	2023
Phylogeny	Lactobacillus silagei sp. nov., isolated from orchardgrass silage.	Tohno M, Kitahara M, Irisawa T, Masuda T, Uegaki R, Ohkuma M, Tajima K.	Int J Syst Evol Microbiol	10.1099/ijs.0.053124-0	2013
Phylogeny	Bifidobacterium actinocoloniiforme sp. nov. and Bifidobacterium bohemicum sp. nov., from the bumblebee digestive tract.	Killer J, Kopecny J, Mrazek J, Koppova I, Havlik J, Benada O, Kott T.	Int J Syst Evol Microbiol	10.1099/ijs.0.022525-0	2011
Phylogeny	Phascolarctobacterium wakonense sp. nov., isolated from common marmoset (Callithrix jacchus) faeces.	Shigeno Y, Kitahara M, Shime M, Benno Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003407	2019
Phylogeny	Characterization of Phascolarctobacterium succinatutens sp. nov., an asaccharolytic, succinate-utilizing bacterium isolated from human feces.	Watanabe Y, Nagai F, Morotomi M	Appl Environ Microbiol	10.1128/AEM.06035-11	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64739	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22533
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Phascolarctobacterium succinatutens (DSM 22533, JCM 16074, YIT 12067)

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