Name: Pseudomonas salomonii 584-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 158046

Type strain:

Species: Pseudomonas salomonii

Strain Designation: 584-1

Culture col. no.: DSM 107228, LMG 22120, CFBP 2022, ICMP 14252, NCPPB 4277, CIP 107802

Strain history: CIP <- 2003 CFBP <- R. Samson: strain 584-1

NCBI tax ID(s): 191391 (species)

SI-ID 87878

CFBP2022, ICMP 14252, NCPPB 4277, LMG 22120, DSM 16732, ICMP 11932, CIP 107802, DSM 107228

Other strains from Pseudomonas salomonii

P. salomonii DSM 16732

Section

Pseudomonas salomonii 584-1 is an obligate aerobe, mesophilic, Gram-negative plant pathogen that was isolated from Allium sativum.

Gram-negative

motile

rod-shaped

mesophilic

obligate aerobe

plant pathogen

16S sequence

Bacteria

genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

Last LPSN update 14-12-2023 (DD-MM-YYYY)

Domain "Bacteria"

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas salomonii

Full Scientific Name (LPSN) Pseudomonas salomonii Gardan et al. 2002

Information on morphological and physiological properties Morphology

[Ref.: #122404] Gram stain negative

[Ref.: #122404] Cell shape rod-shaped

[Ref.: #122404] Motility yes

[Ref.: #122404] Pigment production no

[Ref.: #122404] Pigment name Pyocyanin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64620] Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #64620] Culture medium growth

[Ref.: #64620] Culture medium link Medium recipe at MediaDive

[Ref.: #64620] Culture medium composition expand / minimize

Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
Composition:
Trypticase soy broth 30.0 g/l
Agar 15.0 g/l
Distilled water

[Ref.: #122404] Culture medium

CIP Medium 72

[Ref.: #122404] Culture medium growth

[Ref.: #122404] Culture medium link Medium recipe provided by DSMZ

Temperatures Kind of temperature Temperature

[Ref.: #64620] growth 28 °C

[Ref.: #122404] growth 5-30 °C

[Ref.: #122404] no growth 37 °C

[Ref.: #122404] no growth 41 °C

[Ref.: #64620] Temperature range mesophilic

[Ref.: #122404] Temperature range mesophilic

[Ref.: #122404] Temperature range thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122404] Oxygen tolerance obligate aerobe

Halophily Salt Tested relation Salt conc.

[Ref.: #122404] NaCl growth 0-4 %

[Ref.: #122404] NaCl no growth 6 %

[Ref.: #122404] NaCl no growth 8 %

[Ref.: #122404] NaCl no growth 10 %

Metabolite utilization Metabolite Utilization activity Kind of utilization tested

[Ref.: #122404] citrate ChEBI + carbon source

[Ref.: #122404] esculin ChEBI - hydrolysis

[Ref.: #122404] nitrate ChEBI - reduction

[Ref.: #122404] nitrate ChEBI - respiration

[Ref.: #122404] nitrite ChEBI - reduction

Antibiotica Metabolite Antibiotic sensitivity Antibiotic resistance

[Ref.: #122404] 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) no yes

Metabolite production Metabolite Production

[Ref.: #122404] indole ChEBI no

Enzymes Enzyme Enzyme activity EC number

[Ref.: #68382] acid phosphatase + 3.1.3.2 * from API zym

[Ref.: #122404] alcohol dehydrogenase - 1.1.1.1

[Ref.: #68382] alkaline phosphatase - 3.1.3.1 * from API zym

[Ref.: #68382] alpha-chymotrypsin - 3.4.21.1 * from API zym

[Ref.: #68382] alpha-fucosidase - 3.2.1.51 * from API zym

[Ref.: #68382] alpha-galactosidase - 3.2.1.22 * from API zym

[Ref.: #68382] alpha-glucosidase - 3.2.1.20 * from API zym

[Ref.: #68382] alpha-mannosidase - 3.2.1.24 * from API zym

[Ref.: #122404] amylase -

[Ref.: #122404] beta-galactosidase - 3.2.1.23

[Ref.: #68382] beta-galactosidase - 3.2.1.23 * from API zym

[Ref.: #68382] beta-glucosidase - 3.2.1.21 * from API zym

[Ref.: #68382] beta-glucuronidase - 3.2.1.31 * from API zym

[Ref.: #122404] caseinase + 3.4.21.50

[Ref.: #122404] catalase + 1.11.1.6

[Ref.: #68382] cystine arylamidase - 3.4.11.3 * from API zym

[Ref.: #122404] DNase -

[Ref.: #68382] esterase (C 4) + * from API zym

[Ref.: #68382] esterase lipase (C 8) + * from API zym

[Ref.: #122404] gelatinase +/-

[Ref.: #122404] lecithinase +

[Ref.: #68382] leucine arylamidase + 3.4.11.1 * from API zym

[Ref.: #122404] lipase -

[Ref.: #68382] lipase (C 14) - * from API zym

[Ref.: #122404] lysine decarboxylase - 4.1.1.18

[Ref.: #68382] N-acetyl-beta-glucosaminidase - 3.2.1.52 * from API zym

[Ref.: #68382] naphthol-AS-BI-phosphohydrolase + * from API zym

[Ref.: #122404] ornithine decarboxylase - 4.1.1.17

[Ref.: #122404] oxidase +

[Ref.: #122404] protease +

[Ref.: #68382] trypsin + 3.4.21.4 * from API zym

[Ref.: #122404] tryptophan deaminase -

[Ref.: #122404] tween esterase -

[Ref.: #122404] urease - 3.5.1.5

[Ref.: #68382] valine arylamidase + * from API zym

Only first 10 entries are displayed. Click here to see all.

API® Biotype100: Note that the displayed test results represent raw data and therefore may deviate!

API ID ControlQ D-glucose as carbon sourceGLU D-fructose as carbon sourceFRU D-galactose as carbon sourceGAL D-trehalose as carbon sourceTRE D-mannose as carbon sourceMNE L-sorbose as carbon sourceSBE D-melibiose as carbon sourceMEL sucrose as carbon sourceSAC D-raffinose as carbon sourceRAF maltotriose as carbon sourceMTE maltose as carbon sourceMAL lactose as carbon sourceLAC lactulose as carbon sourceLTE 1-O-methyl-beta-galactopyranoside as carbon sourceMbGa 1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa D-cellobiose as carbon sourceCEL gentiobiose as carbon sourceGEN 1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu esculin as carbon sourceESC D-ribose as carbon sourceRIB L-arabinose as carbon sourceARA D-xylose as carbon sourceXYL palatinose as carbon sourcePLE L-rhamnose as carbon sourceRHA L-fucose as carbon sourceFUC D-melezitose as carbon sourceMLZ D-arabitol as carbon sourceDARL L-arabitol as carbon sourceLARL xylitol as carbon sourceXLT dulcitol as carbon sourceDUL D-tagatose as carbon sourceTAG glycerol as carbon sourceGLY myo-inositol as carbon sourceINO D-mannitol as carbon sourceMAN maltitol as carbon sourceMTL D-turanose as carbon sourceTUR D-sorbitol as carbon sourceSOR adonitol as carbon sourceADO hydroxyquinoline-beta-glucuronide as carbon sourceHBG D-lyxose as carbon sourceLYX i-erythritol as carbon sourceERY 1-O-methyl-alpha-D-glucoside as carbon sourceMDG 3-O-methyl-D-glucose as carbon source3MDG D-saccharate as carbon sourceSAT mucate as carbon sourceMUC L-tartrate as carbon sourceLTAT D-tartrate as carbon sourceDTAT meso-tartrate as carbon sourceMTAT D-malate as carbon sourceDMLT L-malate as carbon sourceLMLT cis-aconitate as carbon sourceCATE trans-aconitate as carbon sourceTATE tricarballylate as carbon sourceTTE citrate as carbon sourceCIT D-glucuronate as carbon sourceGRT D-galacturonate as carbon sourceGAT 2-ketogluconate as carbon source2KG 5-ketogluconate as carbon source5KG tryptophan as carbon sourceTRY N-acetyl-D-glucosamine as carbon sourceNAG D-gluconate as carbon sourceGNT phenylacetate as carbon sourcePAC protocatechuate as carbon sourcePAT 4-hydroxybenzoate as carbon sourcepOBE quinate as carbon sourceQAT gentisate as carbon sourceGTE 3-hydroxybenzoate as carbon sourcemOBE benzoate as carbon sourceBAT 3-phenylpropionate as carbon sourcePPAT m-coumarate as carbon sourceCMT trigonelline as carbon sourceTGE betaine as carbon sourceBET putrescine as carbon sourcePCE 4-aminobutyrate as carbon sourceABT histamine as carbon sourceHIN DL-lactate as carbon sourceLAT caprate as carbon sourceCAP caprylate as carbon sourceCYT L-histidine as carbon sourceHIS succinate as carbon sourceSUC fumarate as carbon sourceFUM glutarate as carbon sourceGRE DL-glycerate as carbon sourceGYT 5-aminovalerate as carbon sourceAVT ethanolamine as carbon sourceETN tryptamine as carbon sourceTTN D-glucosamine as carbon sourceGLN itaconate as carbon sourceITA 3-hydroxybutyrate as carbon source3OBU L-aspartate as carbon sourceAPT L-glutamate as carbon sourceGTT L-proline as carbon sourcePRO D-alanine as carbon sourceDALA L-alanine as carbon sourceLALA L-serine as carbon sourceSER malonate as carbon sourceMNT propionate as carbon sourcePROP L-tyrosine as carbon sourceTYR 2-ketoglutarate as carbon source2KT

[Ref.: #122404] 2444 not determinedn.d. + + + + + - - + - - - - - - - - - - - + + + - - - - + + + - - + + + - - + + - - + - - + + - - + - + + + - + + + + + - - + - + + + - - - - - - + + + - + + + - + + - - + - + - + + + + + + + + + + + +

API® zym: Note that the displayed test results represent raw data and therefore may deviate!

API ID Control 2-naphthyl phosphateAlkaline phosphatase 2-naphthyl butyrateEsterase (C 4) 2-naphtyl caprylateEsterase Lipase (C 8) 2-naphthyl myristateLipase (C 14) L-leucyl-2-naphthylamideLeucine arylamidase L-valyl-2-naphthylamideValine arylamidase L-cystyl-2-naphthylamideCystine arylamidase N-benzoyl-DL-arginine-2-naphthylamideTrypsin N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin 2-naphthyl phosphateAcid phosphatase Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase 6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase 2-naphthyl-betaD-galactpyranosidebeta- Galactosidase Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase 2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase 6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase 1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase 6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase 2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase

[Ref.: #122404] 10661 - - + + - + + - + - + + - - - - - - - -

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64620] Sample type/isolated from Allium sativum

[Ref.: #64620] Country France

[Ref.: #64620] Country ISO 3 Code FRA

[Ref.: #64620] Continent Europe

[Ref.: #122404] Sample type/isolated from Allium sativum

[Ref.: #122404] Country France

[Ref.: #122404] Country ISO 3 Code FRA

[Ref.: #122404] Continent Europe

[Ref.: #122404] Isolation date 1976

* marker position based on {}

Isolation sources categories

#Host #Plants #Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY091528 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples 1631

Soil Samples 874

Animal Samples 3216

Plant Samples 2451

Total Samples 8172

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #64620] Pathogenicity (plant) yes

[Ref.: #64620] Biosafety level 1 Risk group (German classification)
According to TRBA 466

[Ref.: #122404] Biosafety level 1 Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Sequence accession description Seq. accession number Sequence length (bp) Sequence database Associated NCBI tax ID

[Ref.: #64620] Pseudomonas salomonii 16S ribosomal RNA gene, partial sequence AY091528 1374
ENA
191391 tax ID

Genome sequence information:

Sequence accession description Seq. accession number Assembly level Sequence database Associated NCBI tax ID

[Ref.: #66792] Pseudomonas salomonii ICMP 14252 GCA_900107155 scaffold
GenBank
191391 tax ID *

[Ref.: #66792] Pseudomonas salomonii LMG 22120 GCA_001730645 contig
GenBank
191391 tax ID *

[Ref.: #66792] Pseudomonas salomonii strain ICMP 14252 191391.5 wgs
PATRIC
191391 tax ID *

[Ref.: #66792] Pseudomonas salomonii strain LMG 22120 191391.7 wgs
PATRIC
191391 tax ID *

[Ref.: #66792] Pseudomonas salomonii LMG 22120 2663763605 draft
JGI IMG/M
191391 tax ID *

Data predicted using genome information as a basis Genome-based predictions

Predictions from Diaspora project based on:
Pseudomonas salomonii ICMP 14252
NCBI: GCA_900107155.1

Trait Prediction Confidence in % In training data

[Ref.: #69480] motile yes 92.228 no

[Ref.: #69480] glucose-ferment no 88.662 no

[Ref.: #69480] flagellated yes 81.187 no

[Ref.: #69480] gram-positive no 98.375 no

[Ref.: #69480] anaerobic no 98.053 no

[Ref.: #69480] aerobic yes 94.448 no

[Ref.: #69480] halophile no 91.55 no

[Ref.: #69480] spore-forming no 95.173 no

[Ref.: #69480] thermophile no 99.875 no

[Ref.: #69480] glucose-util yes 93.743 no

Availability in culture collections External links

[Ref.: #64620] Culture collection no. DSM 107228, LMG 22120, CFBP 2022, ICMP 14252, NCPPB 4277, CIP 107802

[Ref.: #110890] SI-ID 87878 *

Literature:

Topic Title Authors Journal DOI Year

Phylogeny Pseudomonas salomonii sp. nov., pathogenic on garlic, and Pseudomonas palleroniana sp. nov., isolated from rice. Gardan L, Bella P, Meyer JM, Christen R, Rott P, Achouak W, Samson R Int J Syst Evol Microbiol 10.1099/00207713-52-6-2065 2002 *

References

#20215 Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64620 Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107228

#66792 Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382 Automatically annotated from API zym .

#69479 João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480 Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#110890 Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID87878.1 )

#122404 Collection of Institut Pasteur ; Curators of the CIP; CIP 107802

* These data were automatically processed and therefore are not curated

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