Rhodococcus hoagii (DSM 104936, PAM1126, 103S)

Name: Rhodococcus hoagii (DSM 104936, PAM1126, 103S)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 157816

Type strain

Strain Designation PAM1126, 103S

Culture col. no. DSM 104936 PAM1126 103S

NCBI tax ID(s) 43767

Special Collections DSMZ

Links

Rhodococcus hoagii PAM1126 is a mesophilic human pathogen that was isolated from Clinical case of foal pneumonia [horse].

mesophilic human pathogen genome sequence

Name and taxonomic classification

SI-ID 397994

DSM 104936

@ref 20215

Last LPSN update 2025-12-16 10:07:53

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Rhodococcus

Species Rhodococcus hoagii

Full scientific name Rhodococcus hoagii (Morse 1912) Kämpfer et al. 2014

Synonyms (2)

"Bacillus hoagii"
Corynebacterium hoagii

BacDive ID	Other strains from Rhodococcus hoagii (32)	Type strain
10842	R. hoagii DSM 20295, ATCC 7005, CCUG 20991, CIP 81.17, ... (type strain)
10849	R. hoagii RW2/1, DSM 30791
130476	R. hoagii DSM 26605, NCIMB 10027
130477	R. hoagii VI1, DSM 26606
130478	R. hoagii CV1, DSM 26607
130479	R. hoagii GV1, DSM 26608
130480	R. hoagii GV2, DSM 26609
143270	R. hoagii CCUG 18145
143383	R. hoagii CCUG 18812
145182	R. hoagii CCUG 27822, ATCC 33703
145183	R. hoagii CCUG 27823, ATCC 33707
145443	R. hoagii CCUG 28565
145469	R. hoagii CCUG 28631
146163	R. hoagii CCUG 30487
146579	R. hoagii CCUG 31490
147113	R. hoagii CCUG 32889
147172	R. hoagii CCUG 32992
149690	R. hoagii CCUG 38197
152324	R. hoagii CCUG 46442
153177	R. hoagii CCUG 48649
153564	R. hoagii CCUG 50191 A
154560	R. hoagii CCUG 54412
161313	R. hoagii JCM 1312, ATCC 10146, IAM 12444, IMSNU 20113, ...
161314	R. hoagii JCM 1313, IAM 12445
161315	R. hoagii JCM 1314, IAM 12446
165418	R. hoagii JCM 6817
165419	R. hoagii JCM 6818
165420	R. hoagii JCM 6819, BCRC 13634
165421	R. hoagii JCM 6820
165429	R. hoagii JCM 6828
165430	R. hoagii JCM 6829
165433	R. hoagii JCM 6832

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		93
125438		92.753	positive

Multimedia

@ref:	64389
multimedia content:	DSM_104936.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_104936.jpg
caption:	Medium 535 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64389	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
64389	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.534

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Equidae (Horse)
#Host Body-Site	#Oral cavity and airways	#Lung
#Infection	#Disease	-
#Host	#Juvenile	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
64389	Clinical case of foal pneumonia [horse]	Guelph	Canada	CAN	North America

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
64389			2	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM19669v1 assembly for Prescottella equi 103S	complete	GCA_000196695	685727.3	649633089	685727	99.27

GC content

@ref	GC-content (mol%)	Method
64389	68.82	sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Rhodococcus hoagii 103S 103S
NCBI: GCA_000196695.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.75	no
125438	anaerobic	anaerobicⓘ	no	97.76	no
125438	aerobic	aerobicⓘ	yes	91.53	no
125438	spore-forming	spore-formingⓘ	no	53.80	no
125438	thermophilic	thermophileⓘ	no	97.00	no
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	The pathogenic actinobacterium Rhodococcus equi: what's in a name?	Vazquez-Boland JA, Meijer WG.	Mol Microbiol	10.1111/mmi.14267	2019
	Clonal Confinement of a Highly Mobile Resistance Element Driven by Combination Therapy in Rhodococcus equi.	Alvarez-Narvaez S, Giguere S, Anastasi E, Hearn J, Scortti M, Vazquez-Boland JA.	mBio	10.1128/mbio.02260-19	2019

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64389	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104936
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Rhodococcus hoagii (DSM 104936, PAM1126, 103S)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000196695

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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