Pseudomonas fluorescens FW300-N2E3 is a mesophilic animal pathogen that was isolated from ground water.
mesophilic animal pathogen genome sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Pseudomonadales |
| Family Pseudomonadaceae |
| Genus Pseudomonas |
| Species Pseudomonas fluorescens |
| Full scientific name Pseudomonas fluorescens Migula 1895 (Approved Lists 1980) |
| @ref: | 64377 |
| multimedia content: | DSM_106124.jpg |
| multimedia.multimedia content: | https://www.dsmz.de/microorganisms/photos/DSM_106124.jpg |
| caption: | DSM 106124 on medium 535 at 28 °C |
| intellectual property rights: | © Leibniz-Institut DSMZ |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 64377 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 64377 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 64377 | positive | growth | 28 | mesophilic |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Latitude | Longitude | |
|---|---|---|---|---|---|---|---|---|
| 64377 | ground water | Oak ridge, Tennessee (35° 56' 27.8'' N, 84° 20' 10.2'' W) | USA | USA | North America | 33.9411 | -84.3362 33.9411/-84.3362 |
| @ref | Pathogenicity human | Pathogenicity animal | Biosafety level | Biosafety level comment | |
|---|---|---|---|---|---|
| 64377 | yes, in single cases | 1 | Risk group (German classification) |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 95.20 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 83.30 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.30 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 98.70 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 98.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.28 | no |
| 125438 | aerobic | aerobicⓘ | yes | 92.83 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 84.56 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.00 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 85.60 | no |
| Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|
| The In Silico Characterization of a Salicylic Acid Analogue Coding Gene Clusters in Selected Pseudomonas fluorescens Strains. | Shehroz M, Aslam M, Ali Khan M, Aiman S, Gul Afridi S, Khan A | Iran J Biotechnol | 10.30498/IJB.2019.95299 | 2019 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #64377 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106124 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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