Pseudomonas fluorescens (DSM 106123, GW456-L13)

Name: Pseudomonas fluorescens (DSM 106123, GW456-L13)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 157804

Type strain

Strain Designation GW456-L13

Culture col. no. DSM 106123 GW456-L13

NCBI tax ID(s) 294

Special Collections DSMZ

History DSMZ <- A. M. Deutschbauer, Lawrence Berkeley National Laboratory (LBNL), Berkeley, USA; GW456-L13 <- R. Chakraborti, LBNL

Links

Pseudomonas fluorescens GW456-L13 is an animal pathogen that was isolated from ground water.

animal pathogen genome sequence Bacteria

Name and taxonomic classification

SI-ID 403396

DSM 106123

@ref 20215

Last LPSN update 2026-05-29 08:43:49

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas fluorescens

Full scientific name Pseudomonas fluorescens Migula 1895 (Approved Lists 1980)

BacDive ID	Other strains from **Pseudomonas fluorescens** (99)	Type strain
12851	P. fluorescens DSM 50090, ATCC 13525, ICPB 3200, NCIB 9046, ... (type strain)
12825	P. fluorescens 1175, DSM 1976
12827	P. fluorescens B599, DSM 2764
12828	P. fluorescens AR 11, DSM 4358, NCDO 2085
12829	P. fluorescens WS 1760, DSM 6147
12830	P. fluorescens ST, DSM 6290
12831	P. fluorescens EMK, DSM 6308
12833	P. fluorescens IRB110, DSM 6607
12834	P. fluorescens IRB120, DSM 6608
12835	P. fluorescens IRB130, DSM 6609
12836	P. fluorescens pUTK21, 5RL, DSM 6699
12837	P. fluorescens pUTK21, HK44, DSM 6700
12838	P. fluorescens AB VII, DSM 6757
12839	P. fluorescens PSC, DSM 7122
12840	P. fluorescens MBC 1, DSM 7153
12842	P. fluorescens PCR, DSM 7355
12843	P. fluorescens JD1, DSM 8542
12844	P. fluorescens JD2, DSM 8543
12845	P. fluorescens II, DSM 8369, NCIMB 8859
12846	P. fluorescens 4, DSM 8567
12848	P. fluorescens Tween B, DSM 9958
12850	P. fluorescens SK1, DSM 16274
12852	P. fluorescens 12, 216, DSM 50091, ATCC 17397, ICPB 2657-12, ...
12853	P. fluorescens 411, DSM 50106, ATCC 17826, ICPB 2711-411, ...
12854	P. fluorescens 108, 52-22, DSM 50108, ATCC 17482, CIP 104377, ...
12855	P. fluorescens DSM 50124, ATCC 17581, ICPB 2656-214
12856	P. fluorescens 15, DSM 50148, ATCC 17533, ICPB 2440-15
12858	P. fluorescens 1291, LA, DSM 50415, ATCC 12983, ICPB 2278, ...
12859	P. fluorescens ES1-129-5, DSM 30511
12860	P. fluorescens 92, DSM 23471
128377	P. fluorescens SF002755,
24369	P. fluorescens PWD33, DSM 11531
24370	P. fluorescens PWD34, DSM 11532
24371	P. fluorescens DSM 50101, ATCC 17387, ICPB 2657-2, Stanier ...
24372	P. fluorescens PJ253, DSM 50120, ATCC 17561, ICPB 2656-194
134423	P. fluorescens BA3SM1, CIP 110551
134568	P. fluorescens B10, CIP 106483, ATCC 948, IFO 3903, CCEB ...
134777	P. fluorescens CIP 63.26, CCEB 488
135120	P. fluorescens PMW6, CIP 104683, ATCC 39005, NCIMB 11615
137905	P. fluorescens 3749, CIP 102156
137942	P. fluorescens 215-86, CIP 102245
138074	P. fluorescens 52-1C, CIP 104605, ATCC 15453
138894	P. fluorescens CIP 63.47, ATCC 6972, LMG 1799, NCIMB 8194, ...
139769	P. fluorescens B-1606, DSM 50161, ATCC 17636, ICPB 2805-269, ...
141244	P. fluorescens CCUG 369, ATCC 17567
141379	P. fluorescens CCUG 1320, ATCC 17562, LMG 5940
141398	P. fluorescens CCUG 1428, NCTC 10688
141468	P. fluorescens CCUG 2088, NRRL B-1123, ATCC 10757
141593	P. fluorescens CCUG 3367, ATCC 19373, ATCC 23323, NCTC 1381
143398	P. fluorescens CCUG 18892
145593	P. fluorescens CCUG 28921
145658	P. fluorescens CCUG 29164
145761	P. fluorescens CCUG 29521
145794	P. fluorescens CCUG 29606
145826	P. fluorescens CCUG 29727
146312	P. fluorescens CCUG 30871
146676	P. fluorescens CCUG 31774
146677	P. fluorescens CCUG 31775
146678	P. fluorescens CCUG 31776
146679	P. fluorescens CCUG 31777
146764	P. fluorescens CCUG 32081
146879	P. fluorescens CCUG 32348
146915	P. fluorescens CCUG 32444
146922	P. fluorescens CCUG 32456 A
147480	P. fluorescens CCUG 33665
147487	P. fluorescens CCUG 33687
147857	P. fluorescens CCUG 34393
147953	P. fluorescens CCUG 34574
147954	P. fluorescens CCUG 34575 A
148032	P. fluorescens CCUG 34712
148211	P. fluorescens CCUG 35042
148620	P. fluorescens CCUG 35733
148804	P. fluorescens CCUG 35958
151752	P. fluorescens CCUG 44791
151931	P. fluorescens CCUG 45242
153000	P. fluorescens CCUG 48229
153803	P. fluorescens CCUG 51106, ATCC 17386, LMG 5167, NCPPB 1804
154555	P. fluorescens CCUG 54396
157427	P. fluorescens IMI 346683
157428	P. fluorescens IMI 347502
157429	P. fluorescens IMI 347507
157430	P. fluorescens IMI 347511
157431	P. fluorescens IMI 347531
157432	P. fluorescens IMI 349019
157433	P. fluorescens IMI 347506
157801	P. fluorescens FW300-N2E2, DSM 106119
157802	P. fluorescens FW300-N1B4, DSM 106120
157803	P. fluorescens FW300-N2C3, DSM 106121
157805	P. fluorescens FW300-N2E3, DSM 106124
161307	P. fluorescens JCM 13057, ATCC 949, IFO 3507, NBRC 3507, ...
161308	P. fluorescens JCM 13059, ATCC 11253, NRRL B-1244
161474	P. fluorescens JCM 14347, ATCC 14150, IFO 15840, LMG 14675, ...
161958	P. fluorescens JCM 17186, FERM P-11027, NBRC 107686
162688	P. fluorescens JCM 20007, ATCC 15916, IAM 1008
162702	P. fluorescens JCM 20030, IAM 1051
162704	P. fluorescens JCM 20032, ATCC 15917, IAM 1055
162712	P. fluorescens JCM 20046, IAM 1092, IFO 12568, NBRC 12568
162722	P. fluorescens JCM 20064, ATCC 31419, IAM 1126
163414	P. fluorescens JCM 2779, AJ 2089, IAM 12405

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	92.587
125438	98	negative
125439	95.275	negative

Multimedia

@ref:	64376
multimedia content:	DSM_106123.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_106123.jpg
caption:	DSM 106123 on medium 1 at 28 °C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64376	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
64376	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
64376	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	93.516
125439	obligate aerobe	96.27

Spore formation

@ref	Spore formation	Confidence
125439		98.737

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Groundwater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
64376	ground water	Oak ridge, Tennessee (35° 56' 28.4'' N, 84° 20' 10.3'' W)	USA	USA	North America	35.9312	-84.31 35.9312/-84.31

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
64376	yes, in single cases		1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM144032v1 assembly for Pseudomonas fluorescens GW456-L13	scaffold	GCA_001440325	2690315765	294	77.37

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM144032v1 assembly for Pseudomonas fluorescens GW456-L13
NCBI: GCA_001440325

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.27	no
125439	gram_stain	BacteriaNetⓘ	negative	95.28	no
125439	motility	BacteriaNetⓘ	yes	79.64	no
125439	spore_formation	BacteriaNetⓘ	no	98.74	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pseudomonas fluorescens GW456-L13
NCBI: GCA_001440325.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	98.33	no
125438	aerobic	aerobicⓘ	yes	93.52	no
125438	spore-forming	spore-formingⓘ	no	86.52	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	92.59	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64376	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106123
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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