Name: Macrococcus caseolyticus subsp. hominis NRL/St 03/628
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 157751

Type strain:

Species: Macrococcus caseolyticus subsp. hominis

Strain Designation: NRL/St 03/628

Culture col. no.: DSM 103682, CCM 7927

Strain history: <- I. Sedlácek; CCM 7927 <- P. Jezek and P. Petras, Public hospital, Pribram, Czech Republic

NCBI tax ID(s): 1891096 (subspecies)

SI-ID 405094

DSM 103682

Section

Macrococcus caseolyticus subsp. hominis NRL/St 03/628 is a mesophilic, Gram-positive bacterium that was isolated from vaginal smear.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Macrococcus*
	Species	**Macrococcus caseolyticus subsp. hominis**
	Full Scientific Name (LPSN)	Macrococcus caseolyticus subsp. hominis Mašla?ová et al. 2018

Synonym

"Macrococcoides caseolyticus subsp. hominis"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64320]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #64320]

Culture medium growth

[Ref.: #64320]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64320]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #64320]			growth	37 °C

[Ref.: #64320]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.898

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64320]	Sample type/isolated from	vaginal smear
[Ref.: #64320]	Geographic location (country and/or sea, region)	Ceske Budejovice
[Ref.: #64320]	Country	Czech Republic
[Ref.: #64320]	Country ISO 3 Code	CZE
[Ref.: #64320]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Urogenital tract

#Vagina

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence MH044686 (>99% sequence identity) for Macrococcus from Microbeatlas

Aquatic Samples	930
Soil Samples	1069
Animal Samples	8379
Plant Samples	372
Total Samples	10750

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64320]	Macrococcus caseolyticus subsp. hominis strain CCM 7927 16S ribosomal RNA gene, partial sequence	MH044686	1561	ENA	1891096 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Macrococcus caseolyticus subsp. hominis CCM 7927	GCA_002742395	contig	GenBank	1891096 tax ID	*
[Ref.: #66792]	Macrococcus sp. CCM 7927	1891096.3	wgs	PATRIC	1891096 tax ID	*
[Ref.: #66792]	Macrococcus caseolyticus hominis CCM 7927	2898314673	draft	JGI IMG/M	1891096 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Macrococcus sp. CCM 7927 PATRIC: 1891096.3
[Ref.: #69481]	spore-forming	yes	77	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Macrococcus sp. CCM 7927 PATRIC: 1891096.3
[Ref.: #69480]	motile	no	89.185	no
[Ref.: #69480]	gram-positive	yes	94.508	no
[Ref.: #69480]	anaerobic	no	98.931	no
[Ref.: #69480]	aerobic	yes	90.292	no
[Ref.: #69480]	halophile	yes	91.358	no
[Ref.: #69480]	spore-forming	no	84.385	no
[Ref.: #69480]	glucose-util	yes	88.47	no
[Ref.: #69480]	flagellated	no	92.947	no
[Ref.: #69480]	thermophile	no	99.268	yes
[Ref.: #69480]	glucose-ferment	no	70.409	no

Availability in culture collections External links

[Ref.: #64320]

Culture collection no.

DSM 103682, CCM 7927

[Ref.: #110615]

SI-ID 405094

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Description and Comparative Genomics of Macrococcus caseolyticus subsp. hominis subsp. nov., Macrococcus goetzii sp. nov., Macrococcus epidermidis sp. nov., and Macrococcus bohemicus sp. nov., Novel Macrococci From Human Clinical Material With Virulence Potential and Suspected Uptake of Foreign DNA by Natural Transformation.	Maslanova I, Wertheimer Z, Sedlacek I, Svec P, Indrakova A, Kovarovic V, Schumann P, Sproer C, Kralova S, Sedo O, Kristofova L, Vrbovska V, Fuzik T, Petras P, Zdrahal Z, Ruzickova V, Doskar J, Pantucek R	Front Microbiol	10.3389/fmicb.2018.01178	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64320

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103682

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#110615

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405094.1 )

* These data were automatically processed and therefore are not curated

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Macrococcus sp. CCM 7927

Macrococcus sp. CCM 7927

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