Name: Thermomonospora catenispora 3-22-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 157686

Type strain:

Species: Thermomonospora catenispora

Strain Designation: 3-22-3

Culture col. no.: DSM 46802, CGMCC 4.7155, ATCC BAA-2627

Strain history: <- H. Wu, Guangxi University, Nanning,China; 3-22-3

NCBI tax ID(s): 2493090 (species)

SI-ID 398848

DSM 46802

Section

Thermomonospora catenispora 3-22-3 is an aerobe, spore-forming, thermophilic bacterium that builds an aerial mycelium and was isolated from mushroom compost.

Gram-positive
other
spore-forming
aerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Thermomonospora*
	Species	**Thermomonospora catenispora**
	Full Scientific Name (LPSN)	Thermomonospora catenispora Wu et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67986]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #67986]	Cell shape	other

[Ref.: #67986]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.477

[Ref.: #69473]	Colony color	Green beige (1000), beige (1001)
[Ref.: #69473]	Cultivation medium used	suter with tyrosine

[Ref.: #69473]	Colony color	Green beige (1000), beige (1001)
[Ref.: #69473]	Cultivation medium used	suter without tyrosine

[Ref.: #67986]	Colony color	whitish to pale yellow

[Ref.: #69473]	Colony color	Ivory (1014)
[Ref.: #69473]	Cultivation medium used	ISP 2

[Ref.: #69473]	Colony color	Light ivory (1015)
[Ref.: #69473]	Cultivation medium used	ISP 3

[Ref.: #69473]	Colony color	Oyster white (1013)
[Ref.: #69473]	Cultivation medium used	ISP 4

[Ref.: #69473]	Colony color	Oyster white (1013)
[Ref.: #69473]	Cultivation medium used	ISP 5

[Ref.: #69473]	Colony color	Oyster white (1013)
[Ref.: #69473]	Cultivation medium used	ISP 7

[Ref.: #69473]	Colony color	Sand yellow (1002)
[Ref.: #69473]	Cultivation medium used	ISP 6

[Ref.: #67986]	Pigment production	no
[Ref.: #67986]	Pigment name	diffusible pigmet
[Ref.: #67986]	Pigment production	no
[Ref.: #67986]	Pigment name	melanoid pigment
[Ref.: #69473]	Pigment production	no
[Ref.: #69473]	Pigment name	Melanin
[Ref.: #69473]	Pigment production	no
[Ref.: #69473]	Pigment name	soluble pigment

[Ref.: #69473]	Multicellular complex forming ability	no
[Ref.: #69473]	Multicellular complex name	Aerial mycelium
[Ref.: #69473]	Medium Name (multicellularity)	ISP 2

[Ref.: #69473]	Multicellular complex forming ability	no
[Ref.: #69473]	Multicellular complex name	Aerial mycelium
[Ref.: #69473]	Medium Name (multicellularity)	ISP 3

[Ref.: #69473]	Multicellular complex forming ability	no
[Ref.: #69473]	Multicellular complex name	Aerial mycelium
[Ref.: #69473]	Medium Name (multicellularity)	ISP 4

[Ref.: #69473]	Multicellular complex forming ability	yes
[Ref.: #69473]	Multicellular complex name	Aerial mycelium
[Ref.: #69473]	Multicellular complex color	Signal white (9003)
[Ref.: #69473]	Medium Name (multicellularity)	ISP 5

[Ref.: #69473]	Multicellular complex forming ability	no
[Ref.: #69473]	Multicellular complex name	Aerial mycelium
[Ref.: #69473]	Medium Name (multicellularity)	ISP 6

[Ref.: #69473]	Multicellular complex forming ability	yes
[Ref.: #69473]	Multicellular complex name	Aerial mycelium
[Ref.: #69473]	Multicellular complex color	Signal white (9003)
[Ref.: #69473]	Medium Name (multicellularity)	ISP 7

[Ref.: #69473]	Multicellular complex forming ability	no
[Ref.: #69473]	Multicellular complex name	Aerial mycelium
[Ref.: #69473]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69473]	Multicellular complex forming ability	no
[Ref.: #69473]	Multicellular complex name	Aerial mycelium
[Ref.: #69473]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #64255]

Caption:

Medium 215 45°C

[Ref.: #64255]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64255]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #64255]

Culture medium growth

[Ref.: #64255]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64255]

Culture medium composition

expand / minimize

[Ref.: #64255]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #64255]

Culture medium growth

[Ref.: #64255]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #64255]	growth	45 °C
[Ref.: #67986]	growth	37-65 °C
[Ref.: #67986]	optimum	45-60 °C

[Ref.: #64255]	Temperature range	thermophilic
[Ref.: #67986]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #67986]			optimum	7.0-8.0
[Ref.: #67986]			growth	7.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67986]

Oxygen tolerance

aerobe

[Ref.: #67986]	Spore description	0.5-1 µm, oval in shape with a ridged surface and non-motile
[Ref.: #67986]	Type of spore	spore
[Ref.: #67986]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.998
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Salt		Salt conc.
[Ref.: #67986]	NaCl	growth	0.0-2.0	%
[Ref.: #67986]	NaCl	optimum	0.0-1.0	%
[Ref.: #69473]	NaCl	growth	0-2.5	%

[Ref.: #67986]	Observation	Forms well-developed aerial mycelium and vegetative mycelium
[Ref.: #67986]	Observation	The whole-cell hydrolysates contain meso-diaminopimelic acid as the diagnostic cell-wall diamino acid and the whole-cell sugars are galactose, glucose, madurose and ribose as diagnostic sugars
[Ref.: #67986]	Observation	The predominant menaquinones are MK-9(H6) and MK-9(H4)
[Ref.: #67986]	Observation	The polar lipid profile contains diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositol mannoside, ninhydrin-positive glycophospholipids, glycolipids and unidentified phospholipids
[Ref.: #67986]	Observation	No mycolic acids are detected
[Ref.: #67986]	Observation	non-acid-alcohol-fast
[Ref.: #67986]	Observation	Short spore chains are borne on the aerial mycelia at maturity
[Ref.: #67986]	Observation	Aerial mycelia are white and branched, abundantly produced on HV medium, ISP4, ISP7 and Gause's asparagine agar
[Ref.: #67986]	Observation	Substrate mycelia are whitish to pale yellow extensively branched but non-fragmenting
[Ref.: #67986]	Observation	Peptidoglycan is of the N-acetylated type

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67986]	adenine ChEBI	+	degradation
[Ref.: #67986]	allantoin ChEBI	-	degradation
[Ref.: #69473]	arabinose ChEBI	+/-	growth
[Ref.: #67986]	casein	-	degradation
[Ref.: #67986]	cellobiose ChEBI	-	carbon source
[Ref.: #69473]	cellulose ChEBI	-	growth
[Ref.: #67986]	D-fructose ChEBI	-	carbon source
[Ref.: #67986]	D-galactose ChEBI	-	carbon source
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #67986]	D-mannitol ChEBI	-	carbon source
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #67986]	D-mannose ChEBI	-	carbon source
[Ref.: #67986]	D-proline ChEBI	-	nitrogen source
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #67986]	D-sorbitol ChEBI	+	carbon source
[Ref.: #67986]	D-threonine ChEBI	-	nitrogen source
[Ref.: #67986]	D-valine ChEBI	-	nitrogen source
[Ref.: #67986]	D-xylose ChEBI	-	carbon source
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #67986]	esculin ChEBI	-	degradation
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69473]	fructose ChEBI	+/-	growth
[Ref.: #67986]	gamma-cyclodextrin ChEBI	-	carbon source
[Ref.: #67986]	gelatin ChEBI	-	degradation
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #67986]	glucose ChEBI	-	carbon source
[Ref.: #69473]	glucose ChEBI	+	growth
[Ref.: #67986]	glutamate ChEBI	+	nitrogen source
[Ref.: #67986]	glycine ChEBI	-	nitrogen source
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #67986]	guanine ChEBI	-	degradation
[Ref.: #67986]	hydroxyproline ChEBI	-	carbon source
[Ref.: #67986]	hypoxanthine ChEBI	+	degradation
[Ref.: #67986]	hypoxanthine ChEBI	-	nitrogen source
[Ref.: #69473]	inositol ChEBI	+/-	growth
[Ref.: #67986]	inulin ChEBI	+	carbon source
[Ref.: #67986]	L-alanine ChEBI	-	nitrogen source
[Ref.: #67986]	L-arabinose ChEBI	-	carbon source
[Ref.: #67986]	L-arginine ChEBI	+	nitrogen source
[Ref.: #67986]	L-aspartate ChEBI	-	nitrogen source
[Ref.: #67986]	L-lysine ChEBI	+	nitrogen source
[Ref.: #67986]	L-rhamnose ChEBI	-	carbon source
[Ref.: #67986]	L-serine ChEBI	-	nitrogen source
[Ref.: #67986]	L-tyrosine ChEBI	+	degradation
[Ref.: #67986]	L-tyrosine ChEBI	+	nitrogen source
[Ref.: #67986]	lactose ChEBI	-	carbon source
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #67986]	maltose ChEBI	-	carbon source
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69473]	mannose ChEBI	-	growth
[Ref.: #67986]	methionine ChEBI	-	nitrogen source
[Ref.: #67986]	milk	+	assimilation
[Ref.: #67986]	nitrate ChEBI	-	reduction
[Ref.: #68379]	nitrate ChEBI	+	reduction	* from API Coryne
[Ref.: #67986]	phenylalanine ChEBI	-	nitrogen source
[Ref.: #67986]	raffinose ChEBI	-	carbon source
[Ref.: #69473]	raffinose ChEBI	-	growth
[Ref.: #69473]	rhamnose ChEBI	-	growth
[Ref.: #67986]	ribose ChEBI	-	carbon source
[Ref.: #67986]	salicin ChEBI	-	carbon source
[Ref.: #67986]	sodium acetate ChEBI	+	carbon source
[Ref.: #67986]	sodium citrate ChEBI	+	carbon source
[Ref.: #67986]	sodium propionate ChEBI	-	carbon source
[Ref.: #67986]	starch ChEBI	+	degradation
[Ref.: #67986]	sucrose ChEBI	-	carbon source
[Ref.: #69473]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #67986]	trehalose ChEBI	-	carbon source
[Ref.: #67986]	tween 20 ChEBI	+	hydrolysis
[Ref.: #67986]	tween 40 ChEBI	+	hydrolysis
[Ref.: #67986]	tween 60 ChEBI	-	hydrolysis
[Ref.: #67986]	tween 80 ChEBI	-	hydrolysis
[Ref.: #67986]	urea ChEBI	+	degradation
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #67986]	xanthine ChEBI	-	degradation
[Ref.: #67986]	xanthine ChEBI	-	nitrogen source
[Ref.: #67986]	xylan ChEBI	-	degradation
[Ref.: #69473]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #67986]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #67986]	catalase	+	1.11.1.6
[Ref.: #67986]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69473]	3966	+	-	-	-	-	-	+	-	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69473]	6150	not determinedn.d.	+	+	+	+/-	+	+	+/-	-	+/-	+/-	+	-	-	-	+/-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #64255]	Sample type/isolated from	mushroom compost
[Ref.: #64255]	Geographic location (country and/or sea, region)	Guangxi province, Nanning
[Ref.: #64255]	Country	China
[Ref.: #64255]	Country ISO 3 Code	CHN
[Ref.: #64255]	Continent	Asia

[Ref.: #67986]	Sample type/isolated from	mushroom compost
[Ref.: #67986]	Geographic location (country and/or sea, region)	Guangxi Zhuang
[Ref.: #67986]	Country	China
[Ref.: #67986]	Country ISO 3 Code	CHN
[Ref.: #67986]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Host	#Fungi	#Mushroom
#Engineered	#Agriculture	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ027599 (>99% sequence identity) for Thermomonospora catenispora subclade from Microbeatlas

Aquatic Samples	56
Soil Samples	308
Animal Samples	61
Plant Samples	132
Total Samples	557

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64255]	Streptosporangiaceae bacterium 3-22-3 16S ribosomal RNA gene, partial sequence	KJ027599	1427	ENA	1490294 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67986]	Thermomonospora catenispora 3-22-3	GCA_006363815	scaffold	GenBank	2493090 tax ID
[Ref.: #66792]	Thermomonospora catenispora 3-22-3	2887403198	draft	JGI IMG/M	2493090 tax ID	*

[Ref.: #64255]

GC-content

72.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermomonospora catenispora 3-22-3 NCBI: GCA_006363815.1
[Ref.: #69481]	spore-forming	yes	100	no

Availability in culture collections External links

[Ref.: #64255]

Culture collection no.

DSM 46802, CGMCC 4.7155, ATCC BAA-2627

[Ref.: #110554]

SI-ID 398848

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermomonospora catenispora sp. nov., isolated from mushroom compost.	Wu H, Wei J, Liu B	Int J Syst Evol Microbiol	10.1099/ijsem.0.003515	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#64255

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46802

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67986

Hao Wu, Jinfan We, Bin Liu1: Thermomonospora catenispora sp. nov., isolated from mushroom compost. IJSEM 69: 2465 - 2470 2019 ( DOI 10.1099/ijsem.0.003515 )

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69473

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#110554

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398848.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Thermomonospora catenispora in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF