Enterobacter cloacae (DSM 106614, NRZ36863)

Name: Enterobacter cloacae (DSM 106614, NRZ36863)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 157682

Type strain

Strain Designation NRZ36863

Culture col. no. DSM 106614 NRZ36863

NCBI tax ID(s) 550

Special Collections DSMZ DZIF

History <- N. Pfennigwerth, Ruhr-Universität Bochum, Abt. für Medizinische Mikrobiologie <- M. Wiegand, SYNLAB Analytics & Services Germany GmbH

Links

Enterobacter cloacae NRZ36863 is a bacterium that was isolated from odour closure device in hospital.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 403137

DSM 106614

@ref 20215

Last LPSN update 2026-02-09 11:38:08

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Enterobacter

Species Enterobacter cloacae

Full scientific name Enterobacter cloacae (Jordan 1890) Hormaeche and Edwards 1960 (Approved Lists 1980)

Synonyms (3)

"Cloaca cloacae"
"Bacillus cloacae"
"Bacterium cloacae"

BacDive ID	Other strains from **Enterobacter cloacae** (57)	Type strain
4360	E. cloacae A2-4, DSM 3264, IFO 12935, NBRC 12935, CIP ...
4361	E. cloacae D 12, D12, DSM 6234, CCM 7931, CIP 104674
4363	E. cloacae A-8, DSM 26481, ATCC 23355, CCUG 33777, CECT ...
100194	E. cloacae STI08309(IMET), INA 188, IMET 8309
23915	E. cloacae WS 20940, DSM 30062
134563	E. cloacae B0025752, CIP 106422
134732	E. cloacae CIP 57.9
135801	E. cloacae P99, CIP 79.28, NCIMB 12091
136232	E. cloacae AmMS 204, CIP 103624, ATCC 49141
136527	E. cloacae 20/78, CIP 106471
136754	E. cloacae RIVM WR3, CIP 110806, NCTC 13168, WDCM 00200
136949	E. cloacae EN-117, CIP 108488
137003	E. cloacae CIP 60.22
138654	E. cloacae 1413B, CIP 105132
141188	E. cloacae CCUG 56
141652	E. cloacae CCUG 4426
144505	E. cloacae CCUG 25404
144506	E. cloacae CCUG 25407
144514	E. cloacae CCUG 25437
144515	E. cloacae CCUG 25442
144518	E. cloacae CCUG 25456
144520	E. cloacae CCUG 25464
144521	E. cloacae CCUG 25467
144863	E. cloacae CCUG 26899
145768	E. cloacae CCUG 29540, ATCC 29941
146596	E. cloacae CCUG 31552
146754	E. cloacae CCUG 32069
146836	E. cloacae CCUG 32203 B
146902	E. cloacae CCUG 32405
147301	E. cloacae CCUG 33336
147305	E. cloacae CCUG 33342
147579	E. cloacae CCUG 33830
147673	E. cloacae CCUG 33986, NCTC 11936
148432	E. cloacae CCUG 35438
148634	E. cloacae CCUG 35748
149083	E. cloacae CCUG 36835
149658	E. cloacae CCUG 38136
150146	E. cloacae CCUG 39095
150353	E. cloacae CCUG 39712
151275	E. cloacae CCUG 43598
151276	E. cloacae CCUG 43599
154273	E. cloacae CCUG 52947
155892	E. cloacae CCUG 59573
155911	E. cloacae CCUG 59627
157221	E. cloacae CCUG 70660, NCTC 13405
157222	E. cloacae CCUG 70661, NCTC 13406
157345	E. cloacae IMI 347357
157346	E. cloacae IMI 347358
157347	E. cloacae IMI 347359
157348	E. cloacae IMI 378896
157683	E. cloacae ZW9, DSM 109592
157684	E. cloacae ZW32, DSM 109593
162811	E. cloacae JCM 20208, IAM 1562
162813	E. cloacae JCM 20225, IAM 1615
162814	E. cloacae JCM 20227, IAM 1624
172312	E. cloacae CIMB 04-7032, CRBIP17.69
172313	E. cloacae BM4439, CIP 111219

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99.5
125439	negative	97.4

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
64251	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
64251	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
64251	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
64251	positive	growth	28
64251	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		92.3

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	+	fermentation	from API 20E
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
64251	+	+	-	+	+	-	-	-	-	-	-	+	+	+	+	-	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Medical device
#Infection	#Medical environment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
64251	odour closure device in hospital	Wilhelmshaven	Germany	DEU	Europe	53.53	8.1125 53.53/8.1125

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64251	2	Risk group (German classification)

Phages

@ref	Name	Strain number
124042	Enterobacter phage vB_EclP-aire	DSM 106614
124042	Enterobacter phage vB_Ecl-Bud	DSM 106614
124042	Enterobacter phage vB_Ecl-Rudi	DSM 106614
124042	Enterobacter phage vB_Ecl-Kurt	DSM 106614

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1904848v1 assembly for Enterobacter asburiae FDAARGOS 1432	complete	GCA_019048485	61645.420	61645	98.52

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Enterobacter asburiae strain FDAARGOS 1432
PATRIC: 61645.420

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	92.30	no
125439	motility	BacteriaNetⓘ	yes	66.90	no
125439	gram_stain	BacteriaNetⓘ	negative	97.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	78.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Enterobacter asburiae strain FDAARGOS 1432 strain Not applicable
PATRIC: 61645.420

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	95.06	no
125438	spore-forming	spore-formingⓘ	no	88.69	no
125438	aerobic	aerobicⓘ	no	64.80	no
125438	thermophilic	thermophileⓘ	no	100.00	yes
125438	flagellated	motile2+ⓘ	yes	77.33	no

Literature

Title	Authors	Journal	DOI	Year
Laser-assisted microbial culturomics.	Qu T, Koch L, Mukherjee R, Tu Y, Seidel AL, Puttmann LD, Winkel A, Yang I, Grischke J, Liu D, Wolkers WF, Kittler S, Chichkov B, Stiesch M, Szafranski SP.	Nat Commun	10.1038/s41467-025-66804-7	2025

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64251	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 106614
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#124042	Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà: PhageDive .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Enterobacter cloacae (DSM 106614, NRZ36863)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Phages

Sequence information

Genome sequences

Genome browser: GCA_019048485

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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