Desulfovibrio sp. (DSM 107641, DF1)

Name: Desulfovibrio sp. (DSM 107641, DF1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 157679

Type strain

Strain Designation DF1

Culture col. no. DSM 107641 DF1

NCBI tax ID(s) 885

Special Collections DSMZ

DF1 is a mesophilic prokaryote that was isolated from sewage.

mesophilic

Name and taxonomic classification

Culture Collection Numbers

DSM 107641 DF1

@ref 20215

Last LPSN update 2025-12-16 10:07:51

Domain Pseudomonadati

Phylum Thermodesulfobacteriota

Class Desulfovibrionia

Order Desulfovibrionales

Family Desulfovibrionaceae

Genus Desulfovibrio

Full scientific name Desulfovibrio Kluyver and van Niel 1936 (Approved Lists 1980)

Synonyms (8)

"Frigididesulfovibrio"
"Alteridesulfovibrio"
Desulfomonas
"Aminidesulfovibrio"
"Psychrodesulfovibrio"
"Aminidesulfovibrio"
"Frigididesulfovibrio"
"Alteridesulfovibrio"

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64248	DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194)		Medium recipe at MediaDive	Name: DESULFOBULBUS SP. MEDIUM (FRESHWATER) (DSMZ Medium 194; with strain-specific modifications) Composition: Na2SO4 2.99103 g/l None 1.49551 g/l Na2CO3 1.49551 g/l NaCl 0.997009 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
64248	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	99.8

Spore formation

@ref	Spore formation	Confidence
125439		95.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Wastewater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
64248	sewage	Konstanz, communal sewage treatment plant	Germany	DEU	Europe	47.6667	9.1832 47.6667/9.1832

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score
66792	Desulfovibrio sp. DF1	complete	2687453647	872	88.51

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Desulfovibrio sp. DF1
IMG: 2687453647

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.50	no
125439	motility	BacteriaNetⓘ	yes	55.20	no
125439	gram_stain	BacteriaNetⓘ	positive	82.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.80	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#64248	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107641
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

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