Name: Bifidobacterium italicum CCUG 70963
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 157232

Type strain:

Species: Bifidobacterium italicum

Culture col. no.: CCUG 70963, LMG 30187, JCM 32703

Strain history: LMG 30187 <-- M. Ventura; Dept. of Chem., Univ. of Parma, Italy; Rab10A.

NCBI tax ID(s): 1960968 (species)

SI-ID 409480

CCUG 70963

Section

Bifidobacterium italicum CCUG 70963 is an anaerobe, mesophilic bacterium that was isolated from Faeces,Oryctolagus cuniculus.

anaerobe
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium italicum**
	Full Scientific Name (LPSN)	Bifidobacterium italicum Lugli et al. 2018

Information on morphological and physiological properties Morphology

[Ref.: #63772]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #63772]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #63772]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63772]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #63772]	Sample type/isolated from	Faeces,Oryctolagus cuniculus
[Ref.: #63772]	Sampling date	2013-05-10
[Ref.: #63772]	Geographic location (country and/or sea, region)	Emilia Romagna,Parma
[Ref.: #63772]	Country	Italy
[Ref.: #63772]	Country ISO 3 Code	ITA
[Ref.: #63772]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Fecal sample of a European rabbit (Oryctolagus cuniculus)
[Ref.: #67770]	Host species	Oryctolagus cuniculus
[Ref.: #67770]	Country	Italy
[Ref.: #67770]	Country ISO 3 Code	ITA
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Leporidae (Rabbit/Hare)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Bifidobacterium italicum Rab10A	GCA_002286915	contig	GenBank	1960968 tax ID

[Ref.: #67770]

GC-content

65.45 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium italicum Rab10A NCBI: GCA_002286915.1
[Ref.: #69480]	flagellated	no	97.504	no
[Ref.: #69480]	gram-positive	yes	92.145	no
[Ref.: #69480]	anaerobic	yes	97.881	no
[Ref.: #69480]	aerobic	no	96.62	yes
[Ref.: #69480]	halophile	no	75.087	no
[Ref.: #69480]	spore-forming	no	95.909	no
[Ref.: #69480]	glucose-util	yes	86.871	no
[Ref.: #69480]	thermophile	no	96.864	no
[Ref.: #69480]	motile	no	93.799	no
[Ref.: #69480]	glucose-ferment	yes	80.241	no

Availability in culture collections External links

[Ref.: #63772]

Culture collection no.

CCUG 70963, LMG 30187, JCM 32703

[Ref.: #110331]

SI-ID 409480

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.	Duranti S, Lugli GA, Napoli S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003306	2019	*
Phylogeny	Phylogenetic classification of six novel species belonging to the genus Bifidobacterium comprising Bifidobacterium anseris sp. nov., Bifidobacterium criceti sp. nov., Bifidobacterium imperatoris sp. nov., Bifidobacterium italicum sp. nov., Bifidobacterium margollesii sp. nov. and Bifidobacterium parmae sp. nov.	Lugli GA, Mangifesta M, Duranti S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M	Syst Appl Microbiol	10.1016/j.syapm.2018.01.002	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#63772 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 70963
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#110331

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID409480.1 )

* These data were automatically processed and therefore are not curated

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Bifidobacterium italicum Rab10A

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