Name: Aggregatibacter kilianii PN_528
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 157204

Type strain:

Species: Aggregatibacter kilianii

Strain Designation: PN_528

Culture col. no.: CCUG 70536, DSM 105094

Strain history: <- N. Norskov-Lauritsen, Aarhus Univ. Hospital, Dept. of Clinical Microbiol.; PN_528

NCBI tax ID(s): 2025884 (species)

SI-ID 406978

DSM 105094, CCUG 70536

Section

Aggregatibacter kilianii PN_528 is a microaerophile, mesophilic bacterium that was isolated from Human abdominal abscess.

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pasteurellales*
	Family	*Pasteurellaceae*
	Genus	*Aggregatibacter*
	Species	**Aggregatibacter kilianii**
	Full Scientific Name (LPSN)	Aggregatibacter kilianii Murra et al. 2019

Information on culture and growth conditions Culture and growth conditions

[Ref.: #64325]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #64325]

Culture medium growth

[Ref.: #64325]

Culture medium link

Medium recipe at MediaDive

[Ref.: #64325]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #63729]			growth	37 °C
[Ref.: #64325]			growth	37 °C

[Ref.: #63729]	Temperature range	mesophilic
[Ref.: #64325]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63729]

Oxygen tolerance

microaerophile

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68377]	D-fructose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	maltose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68377]	sucrose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH
[Ref.: #68377]	urea ChEBI	-	hydrolysis	* from API NH

	Metabolite production	Metabolite	Production
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #68377]	alkaline phosphatase	+	3.1.3.1	* from API NH
[Ref.: #68377]	beta-galactosidase	+	3.2.1.23	* from API NH
[Ref.: #68377]	beta-lactamase	-	3.5.2.6	* from API NH
[Ref.: #68377]	gamma-glutamyltransferase	+	2.3.2.2	* from API NH
[Ref.: #68377]	lipase	-		* from API NH
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #68377]	proline-arylamidase	-	3.4.11.5	* from API NH
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #68377]	urease	-	3.5.1.5	* from API NH

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #64325]	5932	-	+	+	+	+	-	-	-	+	+	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #63729]	Sample type/isolated from	Human abdominal abscess
[Ref.: #63729]	Sampling date	2009
[Ref.: #63729]	Geographic location (country and/or sea, region)	Copenhagen
[Ref.: #63729]	Country	Denmark
[Ref.: #63729]	Country ISO 3 Code	DNK
[Ref.: #63729]	Continent	Europe

[Ref.: #64325]	Sample type/isolated from	abdominal abscess
[Ref.: #64325]	Geographic location (country and/or sea, region)	Copenhagen University Hospital Herlev
[Ref.: #64325]	Country	Denmark
[Ref.: #64325]	Country ISO 3 Code	DNK
[Ref.: #64325]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body-Site	#Other	#Abdomen
#Host Body-Site	#Other	#Abscess
#Infection	#Patient	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #64325]	Aggregatibacter sp. PN_528 16S ribosomal RNA gene, partial sequence	MH160776	1540	ENA	2025884 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aggregatibacter kilianii PN_528	GCA_003130255	contig	GenBank	2025884 tax ID	*
[Ref.: #66792]	Aggregatibacter sp. PN_528	2025884.3	wgs	PATRIC	2025884 tax ID	*
[Ref.: #66792]	Aggregatibacter kilianii PN_528	2868668594	draft	JGI IMG/M	2025884 tax ID	*

[Ref.: #64325]

GC-content

42.9 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aggregatibacter sp. PN_528 PATRIC: 2025884.3
[Ref.: #69480]	motile	no	90.054	no
[Ref.: #69480]	gram-positive	no	98.443	no
[Ref.: #69480]	anaerobic	no	95.832	no
[Ref.: #69480]	aerobic	no	94.168	yes
[Ref.: #69480]	halophile	no	59.142	no
[Ref.: #69480]	spore-forming	no	98.49	no
[Ref.: #69480]	glucose-util	no	51.18	no
[Ref.: #69480]	flagellated	no	94.883	no
[Ref.: #69480]	thermophile	no	97.831	no
[Ref.: #69480]	glucose-ferment	yes	57.781	no

Availability in culture collections External links

[Ref.: #64325]

Culture collection no.

CCUG 70536, DSM 105094

[Ref.: #110303]

SI-ID 406978

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Whole-Genome Sequencing of Aggregatibacter Species Isolated from Human Clinical Specimens and Description of Aggregatibacter kilianii sp. nov.	Murra M, Lutzen L, Barut A, Zbinden R, Lund M, Villesen P, Norskov-Lauritsen N	J Clin Microbiol	10.1128/JCM.00053-18	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#63729 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 70536

#64325

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 105094

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#110303

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406978.1 )

* These data were automatically processed and therefore are not curated

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Aggregatibacter sp. PN_528

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