Streptococcus pneumoniae CCUG 69381 is a microaerophile, mesophilic prokaryote that was isolated from Human,clinical sample.
microaerophile mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Streptococcaceae |
| Genus Streptococcus |
| Species Streptococcus pneumoniae |
| Full scientific name Streptococcus pneumoniae (Klein 1884) Chester 1901 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Growth | Type | Temperature (°C) | Range | |
|---|---|---|---|---|---|
| 63579 | positive | growth | 37 | mesophilic |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | - | |
| #Infection | #Medical environment | #Clinic | |
| #Infection | #Patient | - |
| @ref | Sample type | Sampling date | Geographic location | Country | Country ISO 3 Code | Continent | |
|---|---|---|---|---|---|---|---|
| 63579 | Human,clinical sample | 1993 | Toulouse | France | FRA | Europe |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM3288365v1 assembly for Streptococcus pneumoniae ATCC 700671 | complete | 1313 | 98.6 | ||||
| 66792 | ASM17165v1 assembly for Streptococcus pneumoniae SP195 | contig | 453363 | 70.92 | ||||
| 66792 | ASM201407v1 assembly for Streptococcus pneumoniae CCUG 69381 | scaffold | 1313 | 63.21 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 124043 | Streptococcus pneumoniae strain ATCC 700671 16S ribosomal RNA gene, partial sequence. | GU326246 | 1426 | 1313 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 87.80 | no |
| 125439 | motility | BacteriaNetⓘ | no | 73.10 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 86.60 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | microaerophile | 95.80 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 90.24 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 89.92 | yes |
| 125438 | aerobic | aerobicⓘ | no | 97.48 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 82.37 | no |
| 125438 | thermophilic | thermophileⓘ | no | 94.50 | no |
| 125438 | flagellated | motile2+ⓘ | no | 91.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | A Pangenome Approach for Discerning Species-Unique Gene Markers for Identifications of Streptococcus pneumoniae and Streptococcus pseudopneumoniae. | Gonzales-Siles L, Karlsson R, Schmidt P, Salva-Serra F, Jaen-Luchoro D, Skovbjerg S, Moore ERB, Gomila M. | Front Cell Infect Microbiol | 10.3389/fcimb.2020.00222 | 2020 | |
| Genomic analysis of penicillin-binding proteins and recombination events in an emerging amoxicillin- and meropenem-resistant PMEN3 (Spain9V-3, ST156) variant in Taiwan and comparison with global descendants of this lineage. | Chen Y-Y, Chi H, Liao W-C, Li S-W, Yang Y-C, Lin H-C, Chang H-P, Pan Y-J, Chiang R-L, Hsieh Y-C. | Microbiol Spectr | 10.1128/spectrum.01840-23 | 2023 | ||
| Genetics | PneumoBrowse 2: an integrated visual platform for curated genome annotation and multiomics data analysis of Streptococcus pneumoniae. | Janssen AB, Gibson PS, Bravo AM, de Bakker V, Slager J, Veening JW. | Nucleic Acids Res | 10.1093/nar/gkae923 | 2025 | |
| Virulence-Associated Characteristics of Serotype 14 and Serogroup 9 Streptococcus pneumoniae Clones Circulating in Brazil: Association of Penicillin Non-susceptibility With Transparent Colony Phenotype Variants. | Pinto TCA, Costa NS, Pina SECM, Souza ARV, Oliveira LMA, Moura CAB, Kegele FCO, Merquior VLC, Botelho ACN, Peralta JM, Teixeira LM. | Front Microbiol | 10.3389/fmicb.2020.02009 | 2020 | ||
| Emergence of Amoxicillin-Resistant Variants of Spain9V-ST156 Pneumococci Expressing Serotype 11A Correlates with Their Ability to Evade the Host Immune Response. | Aguinagalde L, Corsini B, Domenech A, Domenech M, Camara J, Ardanuy C, Garcia E, Linares J, Fenoll A, Yuste J. | PLoS One | 10.1371/journal.pone.0137565 | 2015 | ||
| Enzymology | Comparison of PCR-based methods for the simultaneous detection of Neisseria meningitidis, Haemophilus influenzae, and Streptococcus pneumoniae in clinical samples. | de Filippis I, de Andrade CF, Caldeira N, de Azevedo AC, de Almeida AE. | Braz J Infect Dis | 10.1016/j.bjid.2016.04.005 | 2016 | |
| Expansion and evolution of the Streptococcus pneumoniae Spain9V-ST156 clonal complex in Poland. | Sadowy E, Kuch A, Gniadkowski M, Hryniewicz W. | Antimicrob Agents Chemother | 10.1128/aac.01340-09 | 2010 | ||
| Generation and Improvement of Effector Function of a Novel Broadly Reactive and Protective Monoclonal Antibody against Pneumococcal Surface Protein A of Streptococcus pneumoniae. | Kristian SA, Ota T, Bubeck SS, Cho R, Groff BC, Kubota T, Destito G, Martin C, Laudenslager J, Koriazova L, Tahara T, Kanda Y. | PLoS One | 10.1371/journal.pone.0154616 | 2016 | ||
| Pathogenicity | Heteroresistance to fosfomycin is predominant in Streptococcus pneumoniae and depends on the murA1 gene. | Engel H, Gutierrez-Fernandez J, Fluckiger C, Martinez-Ripoll M, Muhlemann K, Hermoso JA, Hilty M, Hathaway LJ. | Antimicrob Agents Chemother | 10.1128/aac.00223-13 | 2013 | |
| Pathogenicity | Genetic characterization of fluoroquinolone-resistant Streptococcus pneumoniae strains isolated during ciprofloxacin therapy from a patient with bronchiectasis. | de la Campa AG, Ferrandiz MJ, Tubau F, Pallares R, Manresa F, Linares J. | Antimicrob Agents Chemother | 10.1128/aac.47.4.1419-1422.2003 | 2003 | |
| Pathogenicity | Changes in fluoroquinolone-resistant Streptococcus pneumoniae after 7-valent conjugate vaccination, Spain. | de la Campa AG, Ardanuy C, Balsalobre L, Perez-Trallero E, Marimon JM, Fenoll A, Linares J. | Emerg Infect Dis | 10.3201/eid1506.080684 | 2009 | |
| Pathogenicity | Compensatory evolution of pbp mutations restores the fitness cost imposed by beta-lactam resistance in Streptococcus pneumoniae. | Albarracin Orio AG, Pinas GE, Cortes PR, Cian MB, Echenique J. | PLoS Pathog | 10.1371/journal.ppat.1002000 | 2011 | |
| Pathogenicity | Heteroresistance to penicillin in Streptococcus pneumoniae. | Morand B, Muhlemann K. | Proc Natl Acad Sci U S A | 10.1073/pnas.0702377104 | 2007 | |
| Pathogenicity | The multidrug-resistant PMEN1 pneumococcus is a paradigm for genetic success. | Wyres KL, Lambertsen LM, Croucher NJ, McGee L, von Gottberg A, Linares J, Jacobs MR, Kristinsson KG, Beall BW, Klugman KP, Parkhill J, Hakenbeck R, Bentley SD, Brueggemann AB. | Genome Biol | 10.1186/gb-2012-13-11-r103 | 2012 | |
| Nomenclature of major antimicrobial-resistant clones of Streptococcus pneumoniae defined by the pneumococcal molecular epidemiology network. | McGee L, McDougal L, Zhou J, Spratt BG, Tenover FC, George R, Hakenbeck R, Hryniewicz W, Lefevre JC, Tomasz A, Klugman KP. | J Clin Microbiol | 10.1128/jcm.39.7.2565-2571.2001 | 2001 | ||
| Pathogenicity | Fluoroquinolone resistance in penicillin-resistant Streptococcus pneumoniae clones, Spain. | de la Campa AG, Balsalobre L, Ardanuy C, Fenoll A, Perez-Trallero E, Linares J, Spanish Pneumococcal Infection Study Network G03/103. | Emerg Infect Dis | 10.3201/eid1010.040382 | 2004 | |
| Pathogenicity | Macrolide-resistant Streptococcus pneumoniae and Streptococcus pyogenes in the pediatric population in Germany during 2000-2001. | Reinert RR, Lutticken R, Bryskier A, Al-Lahham A. | Antimicrob Agents Chemother | 10.1128/aac.47.2.489-493.2003 | 2003 | |
| Pathogenicity | Phenotypic and molecular analysis of penicillin-nonsusceptible Streptococcus pneumoniae isolates in Poland. | Sadowy E, Izdebski R, Skoczynska A, Grzesiowski P, Gniadkowski M, Hryniewicz W. | Antimicrob Agents Chemother | 10.1128/aac.01072-06 | 2007 | |
| Viridans group streptococci are donors in horizontal transfer of topoisomerase IV genes to Streptococcus pneumoniae. | Balsalobre L, Ferrandiz MJ, Linares J, Tubau F, de la Campa AG. | Antimicrob Agents Chemother | 10.1128/aac.47.7.2072-2081.2003 | 2003 | ||
| Phylogeny | Clonal groups of penicillin-nonsusceptible Streptococcus pneumoniae in Baltimore, Maryland: a population-based, molecular epidemiologic study. | McEllistrem MC, Pass M, Elliott JA, Whitney CG, Harrison LH. | J Clin Microbiol | 10.1128/jcm.38.12.4367-4372.2000 | 2000 | |
| Metabolism | Mechanism of action of NB2001 and NB2030, novel antibacterial agents activated by beta-lactamases. | Stone GW, Zhang Q, Castillo R, Doppalapudi VR, Bueno AR, Lee JY, Li Q, Sergeeva M, Khambatta G, Georgopapadakou NH. | Antimicrob Agents Chemother | 10.1128/aac.48.2.477-483.2004 | 2004 | |
| Phylogeny | Pneumococcal pspA sequence types of prevalent multiresistant pneumococcal strains in the United States and of internationally disseminated clones. | Beall B, Gherardi G, Facklam RR, Hollingshead SK. | J Clin Microbiol | 10.1128/jcm.38.10.3663-3669.2000 | 2000 | |
| Pathogenicity | Genotypic survey of recent beta-lactam-resistant pneumococcal nasopharyngeal isolates from asymptomatic children in Chile. | Gherardi G, Inostrozo JS, O'Ryan M, Prado V, Prieto S, Arellano C, Facklam RR, Beall B. | J Clin Microbiol | 10.1128/jcm.37.11.3725-3730.1999 | 1999 | |
| Prevention of pneumococcal disease in mice immunized with conserved surface-accessible proteins. | Hamel J, Charland N, Pineau I, Ouellet C, Rioux S, Martin D, Brodeur BR. | Infect Immun | 10.1128/iai.72.5.2659-2670.2004 | 2004 | ||
| Pathogenicity | Typing and molecular characterization of Streptococcus pneumoniae with reduced susceptibility to cefotaxime isolated in Latin America. | Castanheira M, Jones RN, Silbert S, Brandileone MC, Sader HS | Microb Drug Resist | 10.1089/107662903322762770 | 2003 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #63579 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 69381 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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