Salinimicrobium soli (CCUG 64794, KCTC 32163)

Name: Salinimicrobium soli (CCUG 64794, KCTC 32163)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 156750

Type strain

Culture col. no. CCUG 64794 KCTC 32163

NCBI tax ID(s) 1254399

Special Collections CCUG KCTC Literature strains

Links

Salinimicrobium soli CCUG 64794 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from Reclaimed land.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 411095

KCTC 32163,CCUG 64794

@ref 20215

Last LPSN update 2026-05-29 08:43:34

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Salinimicrobium

Species Salinimicrobium soli

Full scientific name Salinimicrobium soli Kim et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
65209	negative	1.0-2.4 µm	0.4-0.6 µm	rod-shaped
125439	negative					95.604

Colony morphology

@ref	Colony color	Colony shape	Incubation period	Medium used
63163			2 days
65209	yellow	circular	3 days	marine agar 2216

Culture and growth conditions

Culture medium

@ref	Name	Growth
65209	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)
63163	positive	growth	30
65209	positive	growth	20-37
65209	positive	optimum	30

Culture pH

@ref	Ability	Type	PH
65209	positive	optimum	5.5
65209	positive	growth	5.5-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
63163	aerobe
65209	facultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.004

Halophily

@ref	Salt	Growth	Tested relation	Concentration
65209	NaCl	positive	growth	0-4.0 %(w/v)
65209	NaCl	positive	optimum	2 %(w/v)

Observation

65209

ObservationNaCl is not required for growth.

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
65209	58143 ChEBI	5-dehydro-D-gluconate	+	assimilation
65209	58143 ChEBI	5-dehydro-D-gluconate	+	builds acid from
65209		casein	-	hydrolysis
65209	16443 ChEBI	D-tagatose	-	builds acid from
65209	4853 ChEBI	esculin	+	hydrolysis
65209	5291 ChEBI	gelatin	+	hydrolysis
65209	28066 ChEBI	gentiobiose	-	builds acid from
65209	17306 ChEBI	maltose	+	assimilation
65209	28017 ChEBI	starch	-	hydrolysis

Enzymes

@ref	Value	Activity	Ec
65209	acid phosphatase	+	3.1.3.2
65209	alkaline phosphatase	+	3.1.3.1
65209	alpha-chymotrypsin	+	3.4.21.1
65209	alpha-fucosidase	-	3.2.1.51
65209	alpha-galactosidase	-	3.2.1.22
65209	alpha-glucosidase	-	3.2.1.20
65209	alpha-mannosidase	-	3.2.1.24
65209	beta-galactosidase	-	3.2.1.23
65209	beta-glucosidase	-	3.2.1.21
65209	beta-glucuronidase	-	3.2.1.31
65209	catalase	+	1.11.1.6
65209	cystine arylamidase	+	3.4.11.3
65209	cytochrome oxidase	+	1.9.3.1
65209	esterase (C 4)	+
65209	esterase Lipase (C 8)	+
65209	leucine arylamidase	-	3.4.11.1
65209	lipase (C 14)	+
65209	N-acetyl-beta-glucosaminidase	-	3.2.1.52
65209	naphthol-AS-BI-phosphohydrolase	+
65209	trypsin	+	3.4.21.4
65209	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

65209

Fatty acid	Percentage
C15:0 iso	28.5
C15:0 anteiso	12.8
C17:0 iso 3OH	9.4
C16:0 iso	6.9
C15:1 iso G	4.7
C16:0 iso 3OH	4.6
C15:0 iso 3OH	4
C17:1 iso ω9c	3.6
C17:0 2OH	3.2
C16:1ω7c / ω6c	3.2
C13:0 iso	2.8
C14:0 iso	2.6
C15:0 2OH	2.6
C16:1 iso H	2.1
C17:1 anteiso ω9c	2.1
C15:1ω6c	1.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Terrestrial

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Sampling date
63163	Reclaimed land	Modo	Republic of Korea	KOR	Asia			2011-01-05
65209	reclaimed-land soil	Modo	Republic of Korea	KOR	Asia	37.5367	126.414 37.5367/126.414

Taxonmaps

69479

Global distribution of 16S sequence JX624252 (>99% sequence identity) for Salinimicrobium soli from Microbeatlas

Aquatic Samples	4
Soil Samples	7
Animal Samples	2
Plant Samples	0
Total Samples	13

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4832365v1 assembly for Salinimicrobium soli KCTC 32163	contig	GCA_048323655	1254399	60.47

16S sequences

@ref	Description	Accession	Database
65209	Salinimicrobium soli 16S ribosomal RNA gene, partial sequence	JX624252

GC content

@ref	GC-content (mol%)	Method
65209	43.4	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4832365v1 assembly for Salinimicrobium soli KCTC 32163
NCBI: GCA_048323655

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	78.33	no
125439	gram_stain	BacteriaNetⓘ	negative	95.60	no
125439	motility	BacteriaNetⓘ	no	80.13	no
125439	spore_formation	BacteriaNetⓘ	no	99.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinimicrobium soli sp. nov., isolated from soil of reclaimed land.	Kim JH, Yoon JH, Kim W	Int J Syst Evol Microbiol	10.1099/ijsem.0.000741	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#63163	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 64794
#65209	Jong-Hwa Kim, Jung-Hoon Yoon, Wonyong Kim: Salinimicrobium soli sp. nov., isolated from soil of reclaimed land. IJSEM 66: 462 - 467 2016 ( DOI 10.1099/ijsem.0.000741 , PubMed 26541463 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Salinimicrobium soli (CCUG 64794, KCTC 32163)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Fatty acid profile

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_048323655

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media