Achromobacter aegrifaciens LiPuma AU4014 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from human sputum.
Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Betaproteobacteria |
| Order Burkholderiales |
| Family Alcaligenaceae |
| Genus Achromobacter |
| Species Achromobacter aegrifaciens |
| Full scientific name Achromobacter aegrifaciens Vandamme et al. 2014 |
| BacDive ID | Other strains from Achromobacter aegrifaciens (7) | Type strain |
|---|---|---|
| 154532 | A. aegrifaciens CCUG 54268 | |
| 156529 | A. aegrifaciens CCUG 62439, LMG 26853 | |
| 156530 | A. aegrifaciens CCUG 62440, LMG 26854 | |
| 156531 | A. aegrifaciens CCUG 62441, LMG 26855 | |
| 156532 | A. aegrifaciens CCUG 62442, LMG 26856 | |
| 156533 | A. aegrifaciens CCUG 62443, LMG 11300 | |
| 156893 | A. aegrifaciens CCUG 66433 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 116051 | CIP Medium 72 | Medium recipe at CIP | |||
| 125149 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 125149 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 99.143 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68369 | 17128 ChEBI | adipate | + | assimilation | from API 20NE |
| 68369 | 29016 ChEBI | arginine | - | hydrolysis | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | assimilation | from API 20NE |
| 68369 | 17634 ChEBI | D-glucose | - | fermentation | from API 20NE |
| 68369 | 16899 ChEBI | D-mannitol | - | assimilation | from API 20NE |
| 68369 | 16024 ChEBI | D-mannose | - | assimilation | from API 20NE |
| 68369 | 27689 ChEBI | decanoate | + | assimilation | from API 20NE |
| 68369 | 4853 ChEBI | esculin | - | hydrolysis | from API 20NE |
| 68369 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20NE |
| 68369 | 24265 ChEBI | gluconate | + | assimilation | from API 20NE |
| 68369 | 30849 ChEBI | L-arabinose | - | assimilation | from API 20NE |
| 68369 | 25115 ChEBI | malate | + | assimilation | from API 20NE |
| 68369 | 17306 ChEBI | maltose | - | assimilation | from API 20NE |
| 68369 | 59640 ChEBI | N-acetylglucosamine | - | assimilation | from API 20NE |
| 68369 | 17632 ChEBI | nitrate | + | reduction | from API 20NE |
| 68369 | 27897 ChEBI | tryptophan | - | energy source | from API 20NE |
| 68369 | 16199 ChEBI | urea | - | hydrolysis | from API 20NE |
| Metadata FA analysis | ||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | |||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | |||||||||||||||||||||||||||||||||||||||
| @ref | 62842 | |||||||||||||||||||||||||||||||||||||||
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| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | LMG 26852 assembly for Achromobacter aegrifaciens LMG 26852 | contig | 1287736 | 71.81 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 124043 | Achromobacter aegrifaciens partial 16S rRNA gene, type strain LMG 26852T | HF586507 | 1483 | 1287736 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | gram_stain | BacteriaNetⓘ | negative | 90.88 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 90.95 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 76.64 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.14 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 96.83 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 98.25 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 88.87 | no |
| 125438 | aerobic | aerobicⓘ | yes | 91.83 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.49 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 84.83 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Characterization of a New Glycolipopeptide Biosurfactant Produced by a Chrysene-Degrading Strain Achromobacter aegrifaciens. | Lazzem A, Galai H, Landoulsi A, Chatti A, El May A. | Appl Biochem Biotechnol | 10.1007/s12010-025-05247-8 | 2025 | ||
| Genetics | Draft genome sequence of an arsenotrophic Achromobacter aegrifaciens strain isolated from soil in Bangladesh. | Hoque MN, Hossain A, Faisal GM, Bukharid MZ, Hossain MA, Sultana M. | Microbiol Resour Announc | 10.1128/mra.00137-24 | 2024 | |
| Phosphate solubilization potential of PSB: an advance approach to enhance phosphorous availability for phytostimulation. | Tariq A, Ahmed A. | Environ Sci Pollut Res Int | 10.1007/s11356-024-34934-y | 2024 | ||
| Phylogeny | Isolation and characterization of a newly chrysene-degrading Achromobacter aegrifaciens. | Lazzem A, Lekired A, Ouzari HI, Landoulsi A, Chatti A, El May A. | Int Microbiol | 10.1007/s10123-023-00435-0 | 2024 | |
| Enzymology | Glyphosate-Induced Phosphonatase Operons in Soil Bacteria of the Genus Achromobacter. | Epiktetov DO, Sviridov AV, Tarlachkov SV, Shushkova TV, Toropygin IY, Leontievsky AA. | Int J Mol Sci | 10.3390/ijms25126409 | 2024 | |
| Phylogeny | Arsenotrophic Achromobacter aegrifaciens strains isolated from arsenic contaminated tubewell water and soil sources shared similar genomic potentials. | Hoque MN, Mannan ABA, Hossian A, Faisal GM, Hossain MA, Sultana M. | BMC Microbiol | 10.1186/s12866-024-03676-9 | 2024 | |
| Cefiderocol susceptibility of Achromobacter spp.: study of an accurately identified collection of 230 strains. | Jean-Pierre V, Sorlin P, Pantel A, Chiron R, Lavigne JP, Jeannot K, Marchandin H, Collaborative study group on antimicrobial resistance of Achromobacter spp.. | Ann Clin Microbiol Antimicrob | 10.1186/s12941-024-00709-z | 2024 | ||
| The difference of oropharyngeal microbiome during acute respiratory viral infections in infants and children. | Wu Z, Jiang M, Jia M, Sang J, Wang Q, Xu Y, Qi L, Yang W, Feng L. | Commun Biol | 10.1038/s42003-025-07559-1 | 2025 | ||
| Geographic variation and core microbiota composition of Anastrepha ludens (Diptera: Tephritidae) infesting a single host across latitudinal and altitudinal gradients. | Aluja M, Cerqueda-Garcia D, Altuzar-Molina A, Guillen L, Acosta-Velasco E, Conde-Alarcon J, Moya A. | PeerJ | 10.7717/peerj.18555 | 2024 | ||
| Prevalence and variability of siderophore production in the Achromobacter genus. | Sorlin P, Brivet E, Jean-Pierre V, Aujoulat F, Besse A, Dupont C, Chiron R, Jumas-Bilak E, Menetrey Q, Marchandin H. | Microbiol Spectr | 10.1128/spectrum.02953-23 | 2024 | ||
| Phylogeny | Genomic characterization of Achromobacter species isolates from chronic and occasional lung infection in cystic fibrosis patients. | Veschetti L, Sandri A, Patuzzo C, Melotti P, Malerba G, Lleo MM. | Microb Genom | 10.1099/mgen.0.000606 | 2021 | |
| Enzymology | Glyphosate-Induced Phosphonatase Operons in Soil Bacteria of the Genus Achromobacter | Epiktetov D, Sviridov A, Tarlachkov S, Shushkova T, Toropygin I, Leontievsky A. | Int J Mol Sci | 2024 | ||
| Genetics | Transmission and Antibiotic Resistance of Achromobacter in Cystic Fibrosis. | Gabrielaite M, Bartell JA, Norskov-Lauritsen N, Pressler T, Nielsen FC, Johansen HK, Marvig RL. | J Clin Microbiol | 10.1128/jcm.02911-20 | 2021 | |
| Mobilome Analysis of Achromobacter spp. Isolates from Chronic and Occasional Lung Infection in Cystic Fibrosis Patients. | Veschetti L, Sandri A, Patuzzo C, Melotti P, Malerba G, Lleo MM. | Microorganisms | 10.3390/microorganisms9010130 | 2021 | ||
| Biodegradation of polystyrene nanoplastics by Achromobacter xylosoxidans M9 offers a mealworm gut-derived solution for plastic pollution. | El-Kurdi N, El-Shatoury S, ElBaghdady K, Hammad S, Ghazy M. | Arch Microbiol | 10.1007/s00203-024-03947-z | 2024 | ||
| Phylogeny | Duplex real-time PCR assay for the simultaneous detection of Achromobacter xylosoxidans and Achromobacter spp. | Price EP, Soler Arango V, Kidd TJ, Fraser TA, Nguyen TK, Bell SC, Sarovich DS. | Microb Genom | 10.1099/mgen.0.000406 | 2020 | |
| Chronic Airway Colonization by Achromobacter xylosoxidans in Cystic Fibrosis Patients Is Not Sustained by Their Domestic Environment. | Dupont C, Jumas-Bilak E, Doisy C, Aujoulat F, Chiron R, Marchandin H. | Appl Environ Microbiol | 10.1128/aem.01739-18 | 2018 | ||
| Phylogeny | Taxonomic dissection of Achromobacter denitrificans Coenye et al. 2003 and proposal of Achromobacter agilis sp. nov., nom. rev., Achromobacter pestifer sp. nov., nom. rev., Achromobacter kerstersii sp. nov. and Achromobacter deleyi sp. nov. | Vandamme PA, Peeters C, Inganas E, Cnockaert M, Houf K, Spilker T, Moore ERB, LiPuma JJ. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001254 | 2016 | |
| Phylogeny | Classification of Achromobacter genogroups 2, 5, 7 and 14 as Achromobacter insuavis sp. nov., Achromobacter aegrifaciens sp. nov., Achromobacter anxifer sp. nov. and Achromobacter dolens sp. nov., respectively. | Vandamme P, Moore ER, Cnockaert M, Peeters C, Svensson-Stadler L, Houf K, Spilker T, LiPuma JJ | Syst Appl Microbiol | 10.1016/j.syapm.2013.06.005 | 2013 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #62842 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62438 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68369 | Automatically annotated from API 20NE . |
| #116051 | Collection of Institut Pasteur ; Curators of the CIP; CIP 110713 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125149 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 115985 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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