Shewanella litorisediminis (CCUG 62411, KCTC 23961)

Name: Shewanella litorisediminis (CCUG 62411, KCTC 23961)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 156520

Type strain

Culture col. no. CCUG 62411 KCTC 23961

NCBI tax ID(s) 1173586

Special Collections CCUG KCTC

Links

Shewanella litorisediminis CCUG 62411 is an aerobe bacterium that was isolated from Tidal flat sediment.

aerobe genome sequence Bacteria

Name and taxonomic classification

SI-ID 408628

KCTC 23961,CCUG 62411

@ref 20215

Last LPSN update 2026-05-29 08:43:31

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella litorisediminis

Full scientific name Shewanella litorisediminis Lee and Yoon 2013

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		90.561
125438		99	negative

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
62827	positive	growth	30

Physiology and metabolism

Oxygen tolerance

62827

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125438		91.198

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
62827	Tidal flat sediment	Saemankum	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2334916v1 assembly for Shewanella litorisediminis CCUG 62411	contig	GCA_023349165	1173586.5	8113445296	1173586	70.15
124043	ASM4267872v1 assembly for Shewanella litorisediminis CCUG 62411	scaffold	GCA_042678725			1173586	68.43

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella litorisediminis CCUG 62411
NCBI: GCA_023349165.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	94.62	no
125438	aerobic	aerobicⓘ	no	52.98	yes
125438	spore-forming	spore-formingⓘ	no	91.20	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	90.56	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Shewanella litorisediminis sp. nov., a gammaproteobacterium isolated from a tidal flat sediment.	Lee MH, Yoon JH	Antonie Van Leeuwenhoek	10.1007/s10482-012-9754-7	2012

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62827	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 62411
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Shewanella litorisediminis (CCUG 62411, KCTC 23961)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_023349165

Genome-based predictions

Predictions

Literature

Literature

References

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