Mucilaginibacter dorajii (CCUG 60717, KCTC 23359, JCM 16601)

Name: Mucilaginibacter dorajii (CCUG 60717, KCTC 23359, JCM 16601)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 156203

Type strain

Strain Designation DR-f4

Culture col. no. CCUG 60717 KCTC 23359 JCM 16601 KACC 14556 KACC {14556 2 more

NCBI tax ID(s) 692994

Special Collections CCUG JCM KCTC UCCCB

History JCM <-- B.-C. Kim DR-f4. KCTC <- BC Kim, KRIBB, Korea UCCCB <- Kim B.-C. Central Research Institute, Korea Ginseng Corp.

Links

Mucilaginibacter dorajii DR-f4 is an aerobe, motile, rod-shaped bacterium that was isolated from Rhizophere of Platycodon grandiflorum.

motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 376125

KCTC 23359,JCM 16601,KACC 14556,CECT 7660,CCUG 60717T

@ref 20215

Last LPSN update 2026-05-29 08:43:27

Domain Bacteria

Phylum Bacteroidota

Class Sphingobacteriia

Order Sphingobacteriales

Family Sphingobacteriaceae

Genus Mucilaginibacter

Species Mucilaginibacter dorajii

Full scientific name Mucilaginibacter dorajii Kim et al. 2011

Morphology

Cell morphology

@ref	Cell shape	Gram stain	Confidence
67771	rod-shaped
67771		negative
125439		negative	97.237

Colony morphology

62410

Incubation period2 days

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
62410	positive	growth	30
67770	positive	growth	25
67771	positive	growth	25
67772	positive	optimum	20-25
67772	positive	minimum	4
67772	positive	maximum	30

Culture pH

@ref	Ability	Type	PH
67772	positive	maximum	8.0
67772	positive	minimum	5.0
67772	positive	optimum	5.5-6.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
62410	aerobe
67771	aerobe
125439	obligate aerobe	98.9

Spore formation

@ref	Spore formation	Confidence
125439		99.674

Observation

@ref	Observation
67770	quinones: MK-7
67771	quinones: MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Host species
62410	Rhizophere of Platycodon grandiflorum	2009	Chungcheongnam-Do	Republic of Korea	KOR	Asia
67770	Rhizosphere of Platycodon grandiflorum at Chungcheongnam-do			Republic of Korea	KOR	Asia	Platycodon grandiflorum
67771	From rhizosphere soil of `P. grandiflorum`, Balloonflower, P. grandiflorum			Republic of Korea	KOR	Asia
67772	Rhizosphere of Platycodon grandiflorum	2009	Chungcheongnam-Do	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

67772

Biosafety level1

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953670v1 assembly for Mucilaginibacter dorajii JCM 16601	contig	GCA_039536705	692994	65.07

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67772	Mucilaginibacter dorajii strain DR-f4 16S ribosomal RNA gene, partial sequence	GU139697	1444		692994

GC content

@ref	GC-content (mol%)	Method
67770	42.6	high performance liquid chromatography (HPLC)
67771	42.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953670v1 assembly for Mucilaginibacter dorajii JCM 16601
NCBI: GCA_039536705

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.90	no
125439	gram_stain	BacteriaNetⓘ	negative	97.24	no
125439	motility	BacteriaNetⓘ	yes	40.34	no
125439	spore_formation	BacteriaNetⓘ	no	99.67	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter pineti sp. nov., isolated from Pinus pinaster wood from a mixed grove of pines trees.	Paiva G, Abreu P, Proenca DN, Santos S, Nobre MF, Morais PV	Int J Syst Evol Microbiol	10.1099/ijs.0.057737-0	2014
Metabolism	Mucilaginibacter ginsenosidivorax sp. nov., with ginsenoside converting activity isolated from sediment.	Kim JK, Choi TE, Liu QM, Park HY, Yi TH, Yoon MH, Kim SC, Im WT	J Microbiol	10.1007/s12275-013-2653-4	2013
Phylogeny	Mucilaginibacter dorajii sp. nov., isolated from the rhizosphere of Platycodon grandiflorum.	Kim BC, Lee KH, Kim MN, Lee J, Shin KS	FEMS Microbiol Lett	10.1111/j.1574-6968.2010.02026.x	2010

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62410	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60717
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mucilaginibacter dorajii (CCUG 60717, KCTC 23359, JCM 16601)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039536705

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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