Oceanisphaera ostreae (CCUG 60525, KCTC 23422, T-w6)

Name: Oceanisphaera ostreae (CCUG 60525, KCTC 23422, T-w6)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 156141

Type strain

Strain Designation T-w6

Culture col. no. CCUG 60525 KCTC 23422 T-w6

NCBI tax ID(s) 914151

Special Collections CCUG KCTC

History KCTC <- JH Yoon, KRIBB

Links

Oceanisphaera ostreae T-w6 is an aerobe, Gram-negative bacterium that was isolated from Seawater in oyster farm.

Gram-negative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 409223

KCTC 23422,CCUG 60525

@ref 20215

Last LPSN update 2026-05-29 08:43:26

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Aeromonadales

Family Aeromonadaceae

Genus Oceanisphaera

Species Oceanisphaera ostreae

Full scientific name Oceanisphaera ostreae Choi et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
67771	negative
125439	negative	93.61

Colony morphology

62341

Incubation period1 day

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
62341	positive	growth	30
67771	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
62341	aerobe
67771	aerobe
125439	obligate aerobe	91.016

Spore formation

@ref	Spore formation	Confidence
125439		99.758

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	-
#Engineered	#Food production	#Aquaculture
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
62341	Seawater in oyster farm	2009	South sea	Republic of Korea	KOR	Asia
67771	From seawater of an oyster farm in the South Sea			Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence HQ340607 (>99% sequence identity) for Oceanisphaera ostreae subclade from Microbeatlas

Aquatic Samples	45
Soil Samples	8
Animal Samples	24
Plant Samples	1
Total Samples	78

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4267612v1 assembly for Oceanisphaera ostreae CCUG 60525	scaffold	GCA_042676125	914151	60.41

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67771	Oceanisphaera ostreae strain T-w6 16S ribosomal RNA gene, partial sequence	HQ340607	1465		914151

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4267612v1 assembly for Oceanisphaera ostreae CCUG 60525
NCBI: GCA_042676125

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.02	no
125439	gram_stain	BacteriaNetⓘ	negative	93.61	no
125439	motility	BacteriaNetⓘ	yes	66.04	no
125439	spore_formation	BacteriaNetⓘ	no	99.76	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanisphaera marina sp. nov., isolated from a deep-sea seamount.	Liu J, Sun YW, Zhang DD, Li SN, Zhang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.001906	2017
Phylogeny	Oceanisphaera aquimarina sp. nov., Isolated from Oil-Contaminated Sediment of Ocean Coastal Area from South Korea.	Cho S, Lee SS	Curr Microbiol	10.1007/s00284-016-1103-z	2016
Phylogeny	Oceanisphaera ostreae sp. nov., isolated from seawater of an oyster farm, and emended description of the genus Oceanisphaera Romanenko et al. 2003.	Choi WC, Kang SJ, Jung YT, Oh TK, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.029496-0	2011
Phylogeny	Oceanisphaera avium sp. nov., isolated from the gut of the cinereous vulture, Aegypius monachus.	Sung H, Kim HS, Lee JY, Kang W, Kim PS, Hyun DW, Tak EJ, Jung MJ, Yun JH, Kim MS, Shin NR, Whon TW, Rho JR, Park SD, Shim HE, Bae JW	Int J Syst Evol Microbiol	10.1099/ijsem.0.002797	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62341	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60525
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Oceanisphaera ostreae (CCUG 60525, KCTC 23422, T-w6)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_042676125

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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