Flavobacterium collinsii (CCUG 60109, CECT 7796)

Name: Flavobacterium collinsii (CCUG 60109, CECT 7796)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 156021

Type strain

Culture col. no. CCUG 60109 CECT 7796

NCBI tax ID(s) 1114861

Special Collections CCUG

Links

Flavobacterium collinsii CCUG 60109 is an aerobe, mesophilic prokaryote that was isolated from Trout liver.

aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 411755

CECT 7796,CCUG 60109

@ref 20215

Last LPSN update 2026-02-09 11:37:45

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium collinsii

Full scientific name Flavobacterium collinsii Zamora et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.9
125438		94.5
125438	negative	97.955

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
62208	positive	growth	25	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
62208	aerobe
125439	obligate aerobe	92

Spore formation

@ref	Spore formation	Confidence
125439		99.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Fishes	-
#Host	#Fishes	#Salmonidae
#Host Body-Site	#Organ	#Liver

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
62208	Trout liver	2008-07-24	Madrid	Spain	ESP	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	CECT7796 assembly for Flavobacterium collinsii	scaffold	GCA_902804485	1114861.3	2906818658	1114861	34.63

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Flavobacterium collinsii strain CECT 7796 16S ribosomal RNA gene, partial sequence.	MT760279	1368		1114861

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Flavobacterium collinsii CECT7796
NCBI: GCA_902804485

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.60	no
125439	motility	BacteriaNetⓘ	no	53.30	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium collinsii CECT7796
NCBI: GCA_902804485.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.96	no
125438	anaerobic	anaerobicⓘ	no	98.39	yes
125438	aerobic	aerobicⓘ	yes	88.90	yes
125438	spore-forming	spore-formingⓘ	no	87.01	no
125438	thermophilic	thermophileⓘ	no	98.42	yes
125438	flagellated	motile2+ⓘ	no	94.50	no

Literature

Title	Authors	Journal	DOI	Year
Investigation of the Genus Flavobacterium as a Reservoir for Fish-Pathogenic Bacterial Species: the Case of Flavobacterium collinsii.	Lee BH, Nicolas P, Saticioglu IB, Fradet B, Bernardet JF, Rigaudeau D, Rochat T, Duchaud E.	Appl Environ Microbiol	10.1128/aem.02162-22	2023

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62208	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60109
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium collinsii (CCUG 60109, CECT 7796)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_902804485

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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