Cite this strain

Deinococcus sp. (CCUG 59690)

Name: Deinococcus sp. (CCUG 59690)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 155938

Type strain

Culture col. no. CCUG 59690

NCBI tax ID(s) 47478

Special Collections CCUG

Links

CCUG 59690 is a microaerophile, mesophilic prokaryote that was isolated from Human cornea,69-yr-old woman.

microaerophile mesophilic

Name and taxonomic classification

SI-ID 409439

CCUG 59690

@ref 20215

Last LPSN update 2025-12-16 10:07:26

Domain Thermotogati

Phylum Deinococcota

Class Deinococci

Order Deinococcales

Family Deinococcaceae

Genus Deinococcus

Full scientific name Deinococcus Brooks and Murray 1981

Synonyms (1)

Deinobacter

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
62079	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

62079

Oxygen tolerancemicroaerophile

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68375	22599 ChEBI	arabinose	-	fermentation	from API ID32STA
68378	29016 ChEBI	arginine	-	hydrolysis	from API STA
68375	29016 ChEBI	arginine	-	hydrolysis	from API ID32STA
68375	17057 ChEBI	cellobiose	-	fermentation	from API ID32STA
68378	15824 ChEBI	D-fructose	-	builds acid from	from API STA
68375	15824 ChEBI	D-fructose	-	fermentation	from API ID32STA
68378	17634 ChEBI	D-glucose	-	builds acid from	from API STA
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68375	17634 ChEBI	D-glucose	-	fermentation	from API ID32STA
68375	16899 ChEBI	D-mannitol	-	fermentation	from API ID32STA
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68378	16899 ChEBI	D-mannitol	-	builds acid from	from API STA
68378	16024 ChEBI	D-mannose	-	builds acid from	from API STA
68375	16024 ChEBI	D-mannose	-	fermentation	from API ID32STA
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68375	16988 ChEBI	D-ribose	-	fermentation	from API ID32STA
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68378	65327 ChEBI	D-xylose	-	builds acid from	from API STA
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
68375	4853 ChEBI	esculin	+	hydrolysis	from API ID32STA
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	+	fermentation	from API Coryne
68375	17716 ChEBI	lactose	-	fermentation	from API ID32STA
68379	17716 ChEBI	lactose	+	fermentation	from API Coryne
68378	17716 ChEBI	lactose	-	builds acid from	from API STA
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
68378	17306 ChEBI	maltose	-	builds acid from	from API STA
68375	17306 ChEBI	maltose	-	fermentation	from API ID32STA
68378	28053 ChEBI	melibiose	-	builds acid from	from API STA
68378	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API STA
68378	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API STA
68375	59640 ChEBI	N-acetylglucosamine	-	fermentation	from API ID32STA
68379	17632 ChEBI	nitrate	+	reduction	from API Coryne
68378	17632 ChEBI	nitrate	-	reduction	from API STA
68375	17632 ChEBI	nitrate	+	reduction	from API ID32STA
68375	18257 ChEBI	ornithine	-	degradation	from API ID32STA
68378	16634 ChEBI	raffinose	-	builds acid from	from API STA
68375	16634 ChEBI	raffinose	-	fermentation	from API ID32STA
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68378	17992 ChEBI	sucrose	-	builds acid from	from API STA
68375	17992 ChEBI	sucrose	-	fermentation	from API ID32STA
68378	27082 ChEBI	trehalose	-	builds acid from	from API STA
68375	27082 ChEBI	trehalose	-	fermentation	from API ID32STA
68375	32528 ChEBI	turanose	-	fermentation	from API ID32STA
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
68378	16199 ChEBI	urea	-	hydrolysis	from API STA
68375	16199 ChEBI	urea	-	hydrolysis	from API ID32STA
68378	17151 ChEBI	xylitol	-	builds acid from	from API STA

Antibiotic resistance

@ref	ChEBI	Metabolite	Is antibiotic	Is sensitive	Sensitivity conc.
68378		lysostaphin				from API STA
68375	28368	novobiocin			1.8 µg	from API ID32STA

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68378	15688 ChEBI	acetoin		from API STA
68375	15688 ChEBI	acetoin		from API ID32STA

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68378	15688 ChEBI	acetoin	+	from API STA
68375	15688 ChEBI	acetoin	-	from API ID32STA

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68378	alkaline phosphatase	+	3.1.3.1	from API STA
68375	alkaline phosphatase	+	3.1.3.1	from API ID32STA
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68378	arginine dihydrolase	-	3.5.3.6	from API STA
68375	arginine dihydrolase	-	3.5.3.6	from API ID32STA
68382	beta-galactosidase	-	3.2.1.23	from API zym
68375	beta-galactosidase	-	3.2.1.23	from API ID32STA
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68375	beta-glucosidase	+	3.2.1.21	from API ID32STA
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68375	beta-glucuronidase	-	3.2.1.31	from API ID32STA
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68379	catalase	+	1.11.1.6	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	+		from API Coryne
68375	L-arginine arylamidase	+		from API ID32STA
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68375	ornithine decarboxylase	-	4.1.1.17	from API ID32STA
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68375	pyrrolidonyl arylamidase	+	3.4.19.3	from API ID32STA
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68378	urease	-	3.5.1.5	from API STA
68375	urease	-	3.5.1.5	from API ID32STA
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

62079

Fatty acid	Percentage	ECL
C16:1 ω7c	40.7	15.819
C16:0	19.4	16
C17:1 ω8c	6.5	16.792
C15:0	5.6	15
C17:1 ω9c ISO	5.4	16.416
C16:1 ω9c	4.7	15.774
C17:0	3.4	17
C15:1 ω6c	3.1	14.856
C17:1 ω6c	2.6	16.862
Unidentified	2.2	15.348
C15:0 ISO	2	14.621
C17:0 iso	1.8	16.629
C18:2 ω6,9c/C18:0 ANTE	1.4	17.724
C15:1 ω8c	1.3	14.792

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
62079	+	-	+	+	-	-	+	-	+	-	+	-	+	-	-	-	+	+	+	+	+

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
62079	-	+	-	+	-	+	-	-	-	-	+	-	-	-	-	+	+	-	-	-

API ID32STA

@ref	URE	ADH (Arg)	ODC	ESC	GLU	FRU	MNE	MAL	LAC	TRE	MAN	RAF	RIB	CEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta GAL	L-arginine arylamidaseArgA	PAL	Pyrrolidonyl arylamidasePyrA	NOVO	SAC	NAG	TUR	ARA	beta GUR
62079	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	-	-	-	-	-	-

API STA

@ref	Control	GLU	FRU	MNE	MAL	LAC	TRE	MAN	XLT	MEL	Reduction of nitrateNIT	PAL	Acetoin production (Voges Proskauer test)VP	RAF	XYL	SAC	Acid from methyl-alpha-D-glucopyranosideMDG	NAG	ADH	URE	LSTR
62079	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Female
#Host Body-Site	#Organ	#Eye
#Infection	#Patient	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
62079	Human cornea,69-yr-old woman	2010-04-26	Göteborg	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62079	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59690
#68375	Automatically annotated from API ID32STA .
#68378	Automatically annotated from API STA .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Deinococcus sp. (CCUG 59690)

Name and taxonomic classification

Morphology