Weissella ceti (CCUG 59653, CECT 7719)

Name: Weissella ceti (CCUG 59653, CECT 7719)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 155921

Type strain

Culture col. no. CCUG 59653 CECT 7719

NCBI tax ID(s) 759620

Special Collections CCUG

Links

Weissella ceti CCUG 59653 is a microaerophile, mesophilic prokaryote that was isolated from Beaked whale,spleen .

microaerophile mesophilic genome sequence

Name and taxonomic classification

SI-ID 378486

LMG 30639,CCUG 59653,CECT 7719

@ref 20215

Last LPSN update 2025-12-16 10:07:26

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Weissella

Species Weissella ceti

Full scientific name Weissella ceti Vela et al. 2011

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125438		93
125438		93.452	positive

Colony morphology

62059

Incubation period1 day

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
62059	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

62059

Oxygen tolerancemicroaerophile

Spore formation

@ref	Spore formation	Confidence
125438		90.734

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	teichoic acid biosynthesis	100	1 of 1
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	vitamin K metabolism	100	5 of 5
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	acetoin degradation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	chorismate metabolism	88.89	8 of 9
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	acetate fermentation	75	3 of 4
66794	purine metabolism	72.34	68 of 94
66794	NAD metabolism	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	pyrimidine metabolism	71.11	32 of 45
66794	vitamin B1 metabolism	69.23	9 of 13
66794	cyanate degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	photosynthesis	64.29	9 of 14
66794	pentose phosphate pathway	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	phenylalanine metabolism	61.54	8 of 13
66794	glycogen metabolism	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	glycolysis	58.82	10 of 17
66794	propanol degradation	57.14	4 of 7
66794	aspartate and asparagine metabolism	55.56	5 of 9
66794	serine metabolism	55.56	5 of 9
66794	degradation of sugar alcohols	50	8 of 16
66794	butanoate fermentation	50	2 of 4
66794	sulfopterin metabolism	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	non-pathway related	47.37	18 of 38
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	valine metabolism	44.44	4 of 9
66794	d-mannose degradation	44.44	4 of 9
66794	oxidative phosphorylation	43.96	40 of 91
66794	mevalonate metabolism	42.86	3 of 7
66794	degradation of pentoses	42.86	12 of 28
66794	methionine metabolism	42.31	11 of 26
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	3-chlorocatechol degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	glutamate and glutamine metabolism	39.29	11 of 28
66794	urea cycle	38.46	5 of 13
66794	isoleucine metabolism	37.5	3 of 8
66794	C4 and CAM-carbon fixation	37.5	3 of 8
66794	tetrahydrofolate metabolism	35.71	5 of 14
66794	lipid metabolism	35.48	11 of 31
66794	octane oxidation	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	flavin biosynthesis	33.33	5 of 15
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	threonine metabolism	30	3 of 10
66794	Entner Doudoroff pathway	30	3 of 10
66794	arginine metabolism	29.17	7 of 24
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	cysteine metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	d-xylose degradation	27.27	3 of 11
66794	proline metabolism	27.27	3 of 11
66794	vitamin B6 metabolism	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	glycogen biosynthesis	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	gluconeogenesis	25	2 of 8
66794	CMP-KDO biosynthesis	25	1 of 4
66794	alanine metabolism	24.14	7 of 29
66794	tryptophan metabolism	23.68	9 of 38
66794	leucine metabolism	23.08	3 of 13
66794	sulfate reduction	23.08	3 of 13
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	degradation of hexoses	22.22	4 of 18
66794	tyrosine metabolism	21.43	3 of 14
66794	glutathione metabolism	21.43	3 of 14

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Aquatic mammal
#Host Body-Site	#Organ	#Spleen

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
62059	Beaked whale,spleen (Ziphius cavirostris)	2009-09-16	Canary Islands	Spain	ESP	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1839405v1 assembly for Weissella ceti CECT 7719	complete	GCA_018394055	759620.9	2995988986	759620	98.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Weissella ceti strain CECT 7719
PATRIC: 759620.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	60.50	no
125439	motility	BacteriaNetⓘ	yes	66.00	no
125439	gram_stain	BacteriaNetⓘ	positive	68.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	89.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Weissella ceti strain CECT 7719
PATRIC: 759620.9

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.45	no
125438	anaerobic	anaerobicⓘ	no	84.20	yes
125438	aerobic	aerobicⓘ	no	92.81	yes
125438	spore-forming	spore-formingⓘ	no	90.73	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Weissella ceti sp. nov., isolated from beaked whales (Mesoplodon bidens).	Vela AI, Fernandez A, Bernaldo de Quiros Y, Herraez P, Dominguez L, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.028522-0	2011
Phylogeny	Comparative polyphasic characterization of Weissella strains isolated from beaked whale and rainbow trout (Oncorhynchus mykiss): confirmation of Weissella ceti sp. nov. and description of the novel Weissella tructae sp. nov. isolated from farmed rainbow trout.	Pereira FL, Dorella FA, Castrejon-Najera J, Reis FYT, Ortega C, Irgang R, Echeverria-Bugueno M, Avendano-Herrera R, Figueiredo HCP	Braz J Microbiol	10.1007/s42770-022-00856-5	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62059	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59653
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Weissella ceti (CCUG 59653, CECT 7719)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_018394055

Genome-based predictions

Predictions

Literature

Literature

References

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