Cite this strain

Moraxella atlantae (CCUG 59586)

Name: Moraxella atlantae (CCUG 59586)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 155895

Type strain

Culture col. no. CCUG 59586

NCBI tax ID(s) 34059

Special Collections CCUG

Links

Moraxella atlantae CCUG 59586 is a microaerophile, mesophilic prokaryote that was isolated from Human blood.

microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 411743

CCUG 59586

@ref 20215

Last LPSN update 2025-12-16 10:07:25

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Moraxella

Species Moraxella atlantae

Full scientific name Moraxella atlantae Bøvre et al. 1976 (Approved Lists 1980)

Synonyms (1)

Faucicola atlantae

BacDive ID	Other strains from **Moraxella atlantae** (32)	Type strain
8160	M. atlantae 5118, DSM 6999, ATCC 29525, NCTC 11091, CCUG ... (type strain)
100594	M. atlantae STH00183(ZIMET), Fleming2665, HKI 0183
100595	M. atlantae STI10748(IMET), IMET 10677, NCIB 9660
100596	M. atlantae STI10759(IMET),
100597	M. atlantae STI10817(IMET), SG 1132
100598	M. atlantae STI10793(IMET), SG 1059
100599	M. atlantae STI10822(IMET), SG 1133
100600	M. atlantae SF002743(FSU),
100601	M. atlantae SF002756(FSU),
137110	M. atlantae CIP 58.68
137617	M. atlantae A1922, CCUG 6416, CIP 81.7, ATCC 29526, NCTC ...
142092	M. atlantae CCUG 10706
142093	M. atlantae CCUG 10707
143090	M. atlantae CCUG 17145
143166	M. atlantae CCUG 17631
143347	M. atlantae CCUG 18676
143663	M. atlantae CCUG 20875
145570	M. atlantae CCUG 28855
145602	M. atlantae CCUG 28960
146071	M. atlantae CCUG 30335
146098	M. atlantae CCUG 30376
146499	M. atlantae CCUG 31324
152076	M. atlantae CCUG 45702
152348	M. atlantae CCUG 46485
152928	M. atlantae CCUG 48036
152956	M. atlantae CCUG 48124
154415	M. atlantae CCUG 53470
154631	M. atlantae CCUG 54653
155171	M. atlantae CCUG 56706
155380	M. atlantae CCUG 57536
155668	M. atlantae CCUG 58788
156853	M. atlantae CCUG 66109

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	98

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
62024	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
62024	microaerophile
125439	obligate aerobe	97.9

Spore formation

@ref	Spore formation	Confidence
125439		96.3
125438		97.714

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	methylglyoxal degradation	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	ethanol fermentation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	palmitate biosynthesis	95.45	21 of 22
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	photosynthesis	85.71	12 of 14
66794	vitamin B6 metabolism	81.82	9 of 11
66794	threonine metabolism	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	heme metabolism	78.57	11 of 14
66794	NAD metabolism	77.78	14 of 18
66794	vitamin B1 metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	isoleucine metabolism	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	purine metabolism	71.28	67 of 94
66794	phenylalanine metabolism	69.23	9 of 13
66794	leucine metabolism	69.23	9 of 13
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	serine metabolism	66.67	6 of 9
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	citric acid cycle	64.29	9 of 14
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	lipid metabolism	61.29	19 of 31
66794	cellulose degradation	60	3 of 5
66794	pyrimidine metabolism	57.78	26 of 45
66794	glutathione metabolism	57.14	8 of 14
66794	propanol degradation	57.14	4 of 7
66794	tryptophan metabolism	55.26	21 of 38
66794	non-pathway related	55.26	21 of 38
66794	alanine metabolism	55.17	16 of 29
66794	proline metabolism	54.55	6 of 11
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	lysine metabolism	52.38	22 of 42
66794	suberin monomers biosynthesis	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	glycogen biosynthesis	50	2 of 4
66794	butanoate fermentation	50	2 of 4
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	cysteine metabolism	50	9 of 18
66794	glycine metabolism	50	5 of 10
66794	propionate fermentation	50	5 of 10
66794	urea cycle	46.15	6 of 13
66794	arginine metabolism	45.83	11 of 24
66794	histidine metabolism	44.83	13 of 29
66794	d-mannose degradation	44.44	4 of 9
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	glycolysis	41.18	7 of 17
66794	oxidative phosphorylation	40.66	37 of 91
66794	lipoate biosynthesis	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	pentose phosphate pathway	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	polyamine pathway	34.78	8 of 23
66794	cyanate degradation	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	methane metabolism	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	IAA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	sulfate reduction	30.77	4 of 13
66794	phenol degradation	30	6 of 20
66794	myo-inositol biosynthesis	30	3 of 10
66794	ascorbate metabolism	27.27	6 of 22
66794	degradation of pentoses	25	7 of 28
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	degradation of sugar alcohols	25	4 of 16
66794	degradation of aromatic, nitrogen containing compounds	25	3 of 12
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	degradation of hexoses	22.22	4 of 18

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
62024	Human blood	2010-03-01	Jönköping	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM167899v1 assembly for Faucicola atlantae CCUG 59586	scaffold	GCA_001678995	34059.5	2871046739	34059	58.86

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Moraxella atlantae partial 16S rRNA gene, strain CCUG 59586	FR798913	1047		34059

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Moraxella atlantae CCUG 59586
NCBI: GCA_001678995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.30	no
125439	motility	BacteriaNetⓘ	no	75.70	no
125439	gram_stain	BacteriaNetⓘ	variable	62.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Moraxella atlantae CCUG 59586
NCBI: GCA_001678995.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	96.20	yes
125438	aerobic	aerobicⓘ	yes	71.98	yes
125438	spore-forming	spore-formingⓘ	no	97.71	no
125438	thermophilic	thermophileⓘ	no	98.89	yes
125438	flagellated	motile2+ⓘ	no	75.64	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62024	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59586
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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