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Information on genomic background e.g. entries in nucleic sequence databass Sequence information
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16S Sequence information: |
Only first 5 entries are displayed. Click here to see all.Click here to see only first 5 entries. |
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Sequence accession description |
Seq. accession number |
Sequence length (bp) |
Sequence database |
Associated NCBI tax ID |
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[Ref.: #10434] |
Streptomyces scabiei gene for 16S ribosomal RNA, complete sequence |
D63862.1 |
1530 |
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1930 tax ID |
[Ref.: #20218] |
Streptomyces scabiei gene for 16S ribosomal RNA, 23S ribosomal RNA, complete and partial sequence, strain: ATCC 49173 |
AB026199 |
1857 |
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1930 tax ID |
* |
[Ref.: #20218] |
Streptomyces scabiei gene for 16S rRNA, 16S-23S intergenic spacer, 23S rRNA, partial and complete sequence, isolate: ATCC 49173, clone:S1 |
AB041088 |
332 |
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1930 tax ID |
* |
[Ref.: #20218] |
Streptomyces sp. ATCC 49173 16S ribosomal RNA gene, partial sequence |
AF091226 |
374 |
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82635 tax ID |
* |
[Ref.: #20218] |
Streptomyces scabiei gene for 16S ribosomal RNA, complete sequence |
D63862 |
1530 |
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1930 tax ID |
* |
[Ref.: #20218] |
Streptomyces scabiei strain ATCC 49173 16S ribosomal RNA gene, partial sequence |
FJ007384 |
1441 |
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1930 tax ID |
* |
[Ref.: #20218] |
Streptomyces scabiei strain DSM 41658 clone ITS 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296921 |
272 |
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1930 tax ID |
* |
[Ref.: #20218] |
Streptomyces scabiei strain DSM 41658 clone ITS1 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296922 |
274 |
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1930 tax ID |
* |
[Ref.: #20218] |
Streptomyces scabiei strain DSM 41658 clone ITS15 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296923 |
274 |
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1930 tax ID |
* |
[Ref.: #20218] |
Streptomyces scabiei strain DSM 41658 clone ITS2 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296924 |
274 |
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1930 tax ID |
* |
[Ref.: #20218] |
Streptomyces scabiei strain DSM 41658 clone ITS4 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296925 |
274 |
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1930 tax ID |
* |
[Ref.: #20218] |
Streptomyces scabiei strain DSM 41658 clone ITS5 16S-23S ribosomal RNA intergenic spacer, partial sequence |
AY296926 |
274 |
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1930 tax ID |
* |
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Genome sequence information: |
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Sequence accession description |
Seq. accession number |
Assembly level |
Sequence database |
Associated NCBI tax ID |
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[Ref.: #67770] |
Streptomyces scabiei NCPPB 4066 |
GCA_000738715 |
scaffold |
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1930 tax ID |
[Ref.: #67770] |
Streptomyces scabiei NRRL B-16523 |
GCA_001005405 |
contig |
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1930 tax ID |
[Ref.: #66792] |
Streptomyces scabiei strain NCPPB 4066 |
1930.6 |
wgs |
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1930 tax ID |
* |
[Ref.: #66792] |
Streptomyces scabiei NCPPB 4066 |
2897050335 |
draft |
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1930 tax ID |
* |
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[Ref.: #10434] |
GC-content |
70.5 mol% |
thermal denaturation, midpoint method (Tm) |
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Availability in culture collections External links
[Ref.: #10434] |
Culture collection no. |
DSM 41658, ATCC 49173, JCM 7914, CFBP 4517, CGMCC 4.1765, CIP 105438, ICMP 12542, KACC 20101, KACC 20124, LMG 20323, MTCC 4733, NCPPB 4066, NRRL B-16523, VTT E-011978 |
[Ref.: #84673] |
SI-ID 45196
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Literature: |
Only first 10 entries are displayed. Click here to see all.Click here to see only first 10 entries. |
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Topic |
Title |
Authors |
Journal |
DOI |
Year |
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Phylogeny |
Streptomyces phaeolivaceus sp. nov. and Streptomyces broussonetiae sp. nov., isolated from the leaves and rhizosphere soil of Broussonetia papyrifera. |
Mo P, Liu J, Zhao Y, Xu Z |
Int J Syst Evol Microbiol |
10.1099/ijsem.0.004556 |
2020 |
* |
Enzymology |
Structure and biosynthesis of scabichelin, a novel tris-hydroxamate siderophore produced by the plant pathogen Streptomyces scabies 87.22. |
Kodani S, Bicz J, Song L, Deeth RJ, Ohnishi-Kameyama M, Yoshida M, Ochi K, Challis GL |
Org Biomol Chem |
10.1039/c3ob40536b |
2013 |
* |
Phylogeny |
Streptomyces deccanensis sp. nov., an alkaliphilic species isolated from soil. |
Dastager SG, Kim CJ, Lee JC, Agasar D, Park DJ, Li WJ |
Int J Syst Evol Microbiol |
10.1099/ijs.0.65525-0 |
2008 |
* |
Metabolism |
Detection of the nec1 virulence gene and its correlation with pathogenicity in Streptomyces species on potato tubers and in soil using conventional and real-time PCR. |
Cullen DW, Lees AK |
J Appl Microbiol |
10.1111/j.1365-2672.2006.03146.x |
2007 |
* |
Phylogeny |
DNA relatedness among strains of Streptomyces pathogenic to potato in France: description of three new species, S. europaeiscabiei sp. nov. and S. stelliscabiei sp. nov. associated with common scab, and S. reticuliscabiei sp. nov. associated with netted scab. |
Bouchek-Mechiche K, Gardan L, Normand P, Jouan B |
Int J Syst Evol Microbiol |
10.1099/00207713-50-1-91 |
2000 |
* |
Phylogeny |
Streptomyces spp. Isolated from Potato Scab Lesions Under Nordic Conditions in Finland. |
Lindholm P, Kortemaa H, Kokkola M, Haahtela K, Salkinoja-Salonen M, Valkonen JPT |
Plant Dis |
10.1094/PDIS.1997.81.11.1317 |
1997 |
* |
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First Report of Streptomyces europaeiscabiei Causing Common Scab on Potato in Finland. |
Hiltunen LH, Kelloniemi J, Valkonen JPT |
Plant Dis |
10.1094/PDIS-03-14-0278-PDN |
2014 |
* |
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- References
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#10434 |
Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ;
DSM 41658
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#32707 |
; Curators of the CIP;
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#67770 |
Japan Collection of Microorganism (JCM) ; Curators of the JCM;
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#68368 |
Automatically annotated from API 20E .
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#68371 |
Automatically annotated from API 50CH acid .
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#68382 |
Automatically annotated from API zym .
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#84673 |
Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.:
StrainInfo: A central database for resolving microbial strain identifiers
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(
DOI 10.60712/SI-ID45196.1 )
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#122499 |
Collection of Institut Pasteur ; Curators of the CIP;
CIP 105438
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- * These data were automatically processed and therefore are not curated
Change proposal
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