Name: Streptomyces diastaticus DSM 40077
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15571

Type strain:

Species: Streptomyces diastaticus

Culture col. no.: DSM 40077, AS 4.1853, ATCC 19809, ATCC 3350, CBS 138.20, CBS 562.68, ETH 17541, ETH 28343, IFO 12819, IMRU 3350, ISP 5077, JCM 4082, JCM 4608, KCC S-0082, KCC S-0608, NBRC 12819, NRRL B-1256, RIA 1089, BCRC 13670, BCRC 13701, CCM 3196, CGMCC 4.1853, HAMBI 1038, HUT 6069, IFM 1033, IFO 3419, IFO 3727, IMET 43501, LMG 8568, MTCC 6921, NBRC 3419, NBRC 3727, NRRL B-2102, RIA 410, VKM Ac-1877

Strain history: KCC S-0082 <-- H. Yonehara (IAM 0085) <-- IMRU 3350.

NCBI tax ID(s): 53451 (species)

SI-ID 389306

LMG 8568, ATCC 19809, ATCC 3350, CCRC 13670, CCRC 13701, DSM 40077, HUT 6069, IFO 12819, IFO 3419, IFO 3727, IMET 43501, JCM 4082, JCM 4608, NRRL B-1256, NRRL B-2102, CCM 3196, VKM Ac-1877, CBS 562.68, CBS 138.20, NBRC 12819, NBRC 3419, NBRC 3727, AS 4.1853, BCRC 13701, BCRC 13670, HAMBI 1038, CGMCC 4.1853

Section

Streptomyces diastaticus DSM 40077 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces diastaticus**
	Full Scientific Name (LPSN)	Streptomyces diastaticus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

	Synonym	"Actinomyces* diastaticus"*
	Synonym	"Actinomyces* rutgersensis"*
	Synonym	"Actinomyces* gougeroti"*
	Synonym	Streptomyces gougerotii
	Synonym	Streptomyces rutgersensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9290]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9290]

Culture medium growth

[Ref.: #9290]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9290]

Culture medium composition

expand / minimize

[Ref.: #9290]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9290]

Culture medium growth

[Ref.: #9290]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #9290]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9290]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #20216]	Name of produced compound	Antibiotic agent
[Ref.: #20216]	Name of produced compound	Antifungal agent

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9290]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9290]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	S.rutgersensis (DSM 40077T) 16S rRNA gene	Z76688	1476	ENA	53451 tax ID	*
[Ref.: #20218]	Streptomyces rutgersensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4608	D44262	120	ENA	53451 tax ID	*
[Ref.: #20218]	Streptomyces rutgersensis gene for 16S rRNA, partial sequence, strain: NBRC 12819	AB184170	1478	ENA	53451 tax ID	*
[Ref.: #20218]	Streptomyces rutgersensis gene for 16S rRNA, partial sequence, strain: NBRC 3419	AB184772	1475	ENA	53451 tax ID	*
[Ref.: #20218]	Streptomyces rutgersensis gene for 16S rRNA, partial sequence, strain: NBRC 3727	AB184795	1473	ENA	53451 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces rutgersensis NBRC 12819	GCA_011170105	contig	GenBank	53451 tax ID
[Ref.: #66792]	Streptomyces rutgersensis strain NBRC 12819	53451.3	wgs	PATRIC	53451 tax ID	*

[Ref.: #67770]	GC-content	73 mol%	fluorimetric
[Ref.: #67770]	GC-content	73.5 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces rutgersensis strain NBRC 12819 PATRIC: 53451.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces rutgersensis strain NBRC 12819 PATRIC: 53451.3
[Ref.: #69480]	gram-positive	yes	92.668	no
[Ref.: #69480]	anaerobic	no	99.443	no
[Ref.: #69480]	halophile	no	90.427	no
[Ref.: #69480]	spore-forming	yes	94.754	no
[Ref.: #69480]	glucose-util	yes	89.819	no
[Ref.: #69480]	thermophile	no	97.962	yes
[Ref.: #69480]	aerobic	yes	94.482	no
[Ref.: #69480]	motile	no	95.426	no
[Ref.: #69480]	glucose-ferment	no	87.885	no
[Ref.: #69480]	flagellated	no	97.756	no

Availability in culture collections External links

[Ref.: #9290]

Culture collection no.

DSM 40077, AS 4.1853, ATCC 19809, ATCC 3350, CBS 138.20, CBS 562.68, ETH 17541, ETH 28343, IFO 12819, IMRU 3350, ISP 5077, JCM 4082, JCM 4608, KCC S-0082, KCC S-0608, NBRC 12819, NRRL B-1256, RIA 1089, BCRC 13670, BCRC 13701, CCM 3196, CGMCC 4.1853, HAMBI 1038, HUT 6069, IFM 1033, IFO 3419, IFO 3727, IMET 43501, LMG 8568, MTCC 6921, NBRC 3419, NBRC 3727, NRRL B-2102, RIA 410, VKM Ac-1877

[Ref.: #84658]

SI-ID 389306

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces polyrhachii sp. nov., a novel actinomycete isolated from an edible Chinese black ant (Polyrhachis vicina Roger).	Yu C, Liu C, Wang X, Zhao J, Yang L, Gao R, Zhang Y, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-013-0021-3	2013	*

References

#9290

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40077

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84658

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389306.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces rutgersensis strain NBRC 12819

Streptomyces rutgersensis strain NBRC 12819

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