Streptomyces diastaticus subsp. diastaticus (DSM 40077, AS 4.1853, ATCC 19809)

Name: Streptomyces diastaticus subsp. diastaticus (DSM 40077, AS 4.1853, ATCC 19809)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15571

Type strain

Culture col. no. DSM 40077 AS 4.1853 ATCC 19809 ATCC 3350 CBS 138.20 30 more

NCBI tax ID(s) 68040

Special Collections DSMZ JCM

Links

Streptomyces diastaticus subsp. diastaticus DSM 40077 is a mesophilic prokaryote that was isolated from soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 389306

LMG 8568,ATCC 19809,ATCC 3350,CCRC 13670,CCRC 13701,DSM 40077,HUT 6069,IFO 12819,IFO 3419,IFO 3727,IMET 43501,JCM 4082,JCM 4608,NRRL B-1256,NRRL B-2102,CCM 3196,VKM Ac-1877,CBS 562.68,CBS 138.20,NBRC 12819,NBRC 3419,NBRC 3727,AS 4.1853,BCRC 13701,BCRC 13670,HAMBI 1038,CGMCC 4.1853

@ref 20215

Last LPSN update 2025-12-16 09:50:38

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces diastaticus subsp. diastaticus

Full scientific name Streptomyces diastaticus subsp. diastaticus (Krainsky 1914) Pridham et al. 1958 (Approved Lists 1980)

Synonyms (1)

Streptomyces rutgersensis subsp. rutgersensis

BacDive ID	Other strains from Streptomyces diastaticus subsp. diastaticus (6)	Type strain
15123	S. diastaticus subsp. diastaticus DSM 40496, ATCC 3315, CBS 713.72, IFO 13412, ... (type strain)
15255	S. diastaticus subsp. diastaticus Duché, DSM 40324, AS 4.1854, ATCC 10975, ... (type strain)
15121	S. diastaticus subsp. diastaticus DSM 40650, NCIB 9603, NRRL 2650
15122	S. diastaticus subsp. diastaticus FAL H54, DSM 40668
15124	S. diastaticus subsp. diastaticus DSM 46455, HMGB B 909, IMET 40618, HUT 6116, ...
15777	S. diastaticus subsp. diastaticus DSM 41037, IMRU 3418

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.8
125439		90.5
125438		91

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9290	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9290	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9290	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	97.6

Spore formation

@ref	Spore formation	Confidence
125439		95.7
125438		92.59

Compound production

@ref	Compound
20216	Antibiotic agent
20216	Antifungal agent

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

9290

Sample typesoil

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9290	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1117010v1 assembly for Streptomyces rutgersensis NBRC 12819	contig	GCA_011170105	53451.3	8112150685	53451	77.77

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	S.rutgersensis (DSM 40077T) 16S rRNA gene	Z76688	1476	53451
20218	Streptomyces rutgersensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4608	D44262	120	53451
20218	Streptomyces rutgersensis gene for 16S rRNA, partial sequence, strain: NBRC 12819	AB184170	1478	53451
20218	Streptomyces rutgersensis gene for 16S rRNA, partial sequence, strain: NBRC 3419	AB184772	1475	53451
20218	Streptomyces rutgersensis gene for 16S rRNA, partial sequence, strain: NBRC 3727	AB184795	1473	53451
124043	Streptomyces rutgersensis strain DSM 40077 16S ribosomal RNA gene, partial sequence.	OP860686	514	53451

GC content

@ref	GC-content (mol%)	Method
67770	73	fluorimetric
67770	73.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces rutgersensis NBRC 12819
NCBI: GCA_011170105

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	95.70	no
125439	motility	BacteriaNetⓘ	no	90.50	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	97.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces rutgersensis strain NBRC 12819
PATRIC: 53451.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.37	no
125438	anaerobic	anaerobicⓘ	no	98.39	no
125438	spore-forming	spore-formingⓘ	yes	92.59	no
125438	aerobic	aerobicⓘ	yes	89.43	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Resistance to and accumulation of heavy metals by actinobacteria isolated from abandoned mining areas.	El Baz S, Baz M, Barakate M, Barakate M, Hassani L, Hassani L, El Gharmali A, Imziln B.	ScientificWorldJournal	10.1155/2015/761834	2015
	Electron microscopy of Streptomyces spore morphology and its role in species differentiation.	TRESNER HD, DAVIES MC, BACKUS EJ.	J Bacteriol	10.1128/jb.81.1.70-80.1961	1961
Phylogeny	Reclassification of Streptomyces diastaticus subsp. ardesiacus, Streptomyces gougerotii and Streptomyces rutgersensis.	Komaki H, Tamura T.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004287	2020
Phylogeny	Streptomyces polyrhachii sp. nov., a novel actinomycete isolated from an edible Chinese black ant (Polyrhachis vicina Roger).	Yu C, Liu C, Wang X, Zhao J, Yang L, Gao R, Zhang Y, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-013-0021-3	2013

References

#9290	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40077
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces diastaticus subsp. diastaticus (DSM 40077, AS 4.1853, ATCC 19809)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_011170105

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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