Streptomyces rubiginosus DSM 40177 is a spore-forming bacterium that builds an aerial mycelium and was isolated from soil.
spore-forming genome sequence 16S sequence Bacteria SI-ID 389330
| @ref 20215 |
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Last LPSN update
2026-05-29 08:28:34 |
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Kitasatosporales |
| Family Streptomycetaceae |
| Genus Streptomyces |
| Species Streptomyces rubiginosus |
| Full scientific name Streptomyces rubiginosus (Preobrazhenskaya et al. 1957) Pridham et al. 1958 (Approved Lists 1980) |
| Synonyms (1) |
| BacDive ID | Other strains from Streptomyces rubiginosus (1) | Type strain |
|---|---|---|
| 179176 | S. rubiginosus JA04829, STI40157 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9370 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive  | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 19420 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 19420 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 19420 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 19420 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 19420 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 19420 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes |
| @ref | Oxygen tolerance | Confidence | |
|---|---|---|---|
| 125439 | obligate aerobe | 98.836 |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 19420 | NaCl | positive | maximum | 7.5 % |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68368 | gelatinase | + | from API 20E | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 9370 | Sample typesoil |
Global distribution of 16S sequence LC034307 (>99% sequence identity) for Streptomyces from Microbeatlas 
 Aquatic Samples |
2 |
 Soil Samples |
112 |
 Animal Samples |
49 |
 Plant Samples |
3 |
| Total Samples | 166 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM1464989v1 assembly for Streptomyces pseudogriseolus JCM 4416 | scaffold | GCA_014649895   | 1929.3  | 2984473031  | 1929 | 47.42 | |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Streptomyces rubiginosus gene for 16S rRNA, partial sequence | AB122724 | 565 |  | 1929 | |
| 20218 | Streptomyces rubiginosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4416 | D44130 | 121 | | 1929 | |
| 20218 | Streptomyces rubiginosus strain KCTC 9042 16S ribosomal RNA gene, partial sequence | AY999810 | 1416 | | 1929 | |
| 20218 | Streptomyces rubiginosus gene for 16S rRNA, partial sequence, strain: NBRC 12913 | AB184241 | 1432 | | 1929 | |
| 67770 | Streptomyces rubiginosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4416 | LC034307 | 1484 | | 1929 | |
| 124043 | Streptomyces rubiginosus strain JCM 4416 16S ribosomal RNA gene, partial sequence. | MT760546 | 1371 | | 36817 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Exploring the fibrinolytic potential of marine Actinoalloteichus caeruleus isolated from Bay of Bengal coast. | Suresh KN, C SD. | BMC Microbiol | 10.1186/s12866-025-03815-w | 2025 | | |
| Spitrobot-2 advances time-resolved cryo-trapping crystallography to under 25 ms. | Spiliopoulou M, Hatton CE, Kollewe M, Leimkohl JP, Schikora H, Tellkamp F, Mehrabi P, Schulz EC. | Commun Chem | 10.1038/s42004-025-01784-9 | 2025 | | |
| Data of the crystal structure of xylose isomerase from Streptomyces avermitilis. | Nam KH. | Data Brief | 10.1016/j.dib.2025.111414 | 2025 | | |
| Metabolism | Crystal structure of the metal-free state of glucose isomerase reveals its minimal open configuration for metal binding. | Nam KH. | Biochem Biophys Res Commun | 10.1016/j.bbrc.2021.02.026 | 2021 | |
| Metabolism | Marker-Free System Using Ribosomal Promoters Enhanced Xylose/Glucose Isomerase Production in Streptomyces rubiginosus. | Wang X, Deng Z, Liu T. | Biotechnol J | 10.1002/biot.201900114 | 2019 | |
| Enzymology | Fibrinolytic Protease from Marine Streptomyces rubiginosus VITPSS1. | Verma P, Chatterjee S, Keziah MS, Devi SC. | Cardiovasc Hematol Agents Med Chem | 10.2174/1871525716666180226141551 | 2018 | |
| Genetics | Structural and functional characterization of a metagenomically derived gamma-type carbonic anhydrase and its engineering into a hyperthermostable esterase. | Bodourian CS, Imran M, Georgakis ND, Papageorgiou AC, Labrou NE. | Protein Sci | 10.1002/pro.70396 | 2025 | |
| Probing the modulation of enzyme kinetics by multi-temperature, time-resolved serial crystallography. | Schulz EC, Prester A, von Stetten D, Gore G, Hatton CE, Bartels K, Leimkohl JP, Schikora H, Ginn HM, Tellkamp F, Mehrabi P. | Nat Commun | 10.1038/s41467-025-61631-2 | 2025 | | |
| Standard Sample Preparation for Serial Femtosecond Crystallography. | Schmidt C, Lorenzen K, Schulz J, Han H. | Biomolecules | 10.3390/biom15111488 | 2025 | | |
| Comparison of Two l-Arabinose Isomerases for Multienzymatic Conversion of Lactose in Skim Milk Permeate at Neutral and Acidic pH. | Weber N, Lutz-Wahl S, Fischer L. | J Agric Food Chem | 10.1021/acs.jafc.5c04545 | 2025 | | |
| Crystal structure of glucose isomerase in complex with xylitol inhibitor in one metal binding mode. | Bae JE, Kim IJ, Nam KH. | Biochem Biophys Res Commun | 10.1016/j.bbrc.2017.08.134 | 2017 | | |
| Safety evaluation of the food enzyme xylose isomerase from the genetically modified Streptomyces rubiginosus strain DP-Pzn37. | EFSA Panel on Food Contact Materials, Enzymes and Processing Aids (CEP), Silano V, Barat Baviera JM, Bolognesi C, Cocconcelli PS, Crebelli R, Gott DM, Grob K, Lampi E, Mortensen A, Riviere G, Steffensen IL, Tlustos C, van Loveren H, Vernis L, Zorn H, Glandorf B, Herman L, Engel KH, Smith A, Zeljezic D, Aguilera-Gomez M, Gomes A, Kovalkovicova N, Liu Y, Maia J, Rainieri S, Chesson A. | EFSA J | 10.2903/j.efsa.2020.5978 | 2020 | | |
| Isolation, screening, and identification of chitinase-producing bacterial strains from riverbank soils at Ambo, Western Ethiopia. | Gonfa TG, Negessa AK, Bulto AO. | Heliyon | 10.1016/j.heliyon.2023.e21643 | 2023 | | |
| Room-Temperature Structure of Xylitol-Bound Glucose Isomerase by Serial Crystallography: Xylitol Binding in the M1 Site Induces Release of Metal Bound in the M2 Site. | Nam KH. | Int J Mol Sci | 10.3390/ijms22083892 | 2021 | | |
| Enzymology | Engineering acidic Streptomyces rubiginosus D-xylose isomerase by rational enzyme design. | Waltman MJ, Yang ZK, Langan P, Graham DE, Kovalevsky A. | Protein Eng Des Sel | 10.1093/protein/gzt062 | 2014 | |
| Metabolism | Role of invariant water molecules and water-mediated ionic interactions in D-xylose isomerase from Streptomyces rubiginosus. | Dhanasekaran V, Velmurugan D, Kanaujia SP, Sekar K. | J Biomol Struct Dyn | 10.1080/07391102.2012.703064 | 2013 | |
| Beef tallow injection matrix for serial crystallography. | Nam KH. | Sci Rep | 10.1038/s41598-021-04714-6 | 2022 | | |
| Enzymology | A common mechanism underlying amyloid fibrillation and protein crystallization revealed by the effects of ultrasonication. | Kitayama H, Yoshimura Y, So M, Sakurai K, Yagi H, Goto Y. | Biochim Biophys Acta | 10.1016/j.bbapap.2013.09.016 | 2013 | |
| Lard Injection Matrix for Serial Crystallography. | Nam KH. | Int J Mol Sci | 10.3390/ijms21175977 | 2020 | | |
| Characterization of the pH-dependent dissociation of a multimeric metalloprotein Streptomyces rubiginosus xylose isomerase by ESI FT-ICR mass spectrometry. | Janis J, Pasanen S, Rouvinen J, Vainiotalo P. | J Mass Spectrom | 10.1002/jms.1413 | 2008 | | |
| SAXSMoW 2.0: Online calculator of the molecular weight of proteins in dilute solution from experimental SAXS data measured on a relative scale. | Piiadov V, Ares de Araujo E, Oliveira Neto M, Craievich AF, Polikarpov I. | Protein Sci | 10.1002/pro.3528 | 2019 | | |
| Millisecond cryo-trapping by the spitrobot crystal plunger simplifies time-resolved crystallography. | Mehrabi P, Sung S, von Stetten D, Prester A, Hatton CE, Kleine-Dopke S, Berkes A, Gore G, Leimkohl JP, Schikora H, Kollewe M, Rohde H, Wilmanns M, Tellkamp F, Schulz EC. | Nat Commun | 10.1038/s41467-023-37834-w | 2023 | | |
| Engineering of Escherichia coli for D-allose fermentative synthesis from D-glucose through izumoring cascade epimerization. | Zheng LJ, Guo Q, Zhang YX, Liu CY, Fan LH, Zheng HD. | Front Bioeng Biotechnol | 10.3389/fbioe.2022.1050808 | 2022 | | |
| Safety evaluation of the food enzyme alpha-amylase from the genetically modified Bacillus amyloliquefaciens strain DP-Czb53. | EFSA Panel on Food Contact Materials, Enzymes and Processing Aids (CEP), Silano V, Barat Baviera JM, Bolognesi C, Cocconcelli PS, Crebelli R, Gott DM, Grob K, Lambre C, Lampi E, Mengelers M, Mortensen A, Riviere G, Steffensen IL, Tlustos C, Van Loveren H, Vernis L, Zorn H, Herman L, Gomes A, Andryszkiewicz M, Kovalkovicova N, Liu Y, Chesson A. | EFSA J | 10.2903/j.efsa.2020.6185 | 2020 | | |
| Metabolism | An innovative biocatalyst for production of ethanol from xylose in a continuous bioreactor. | Silva CR, Zangirolami TC, Rodrigues JP, Matugi K, Giordano RC, Giordano RL. | Enzyme Microb Technol | 10.1016/j.enzmictec.2011.09.005 | 2012 | |
| Catalytic efficiency of immobilized glucose isomerase in isomerization of glucose to fructose | Seyhan Tukel S, Alagoz D. | Food Chem | 10.1016/j.foodchem.2008.04.035 | 2008 | | |
| Enzymology | Direct comparison of the crystal and solution structure of glucose/xylose isomerase from Streptomyces rubiginosus. | Kozak M. | Protein Pept Lett | 10.2174/0929866054395851 | 2005 | |
| Update of the list of QPS-recommended biological agents intentionally added to food or feed as notified to EFSA 6: suitability of taxonomic units notified to EFSA until March 2017. | EFSA Panel on Biological Hazards (BIOHAZ), Ricci A, Allende A, Bolton D, Chemaly M, Davies R, Girones R, Koutsoumanis K, Lindqvist R, Norrung B, Robertson L, Ru G, Fernandez Escamez PS, Sanaa M, Simmons M, Skandamis P, Snary E, Speybroeck N, Ter Kuile B, Threlfall J, Wahlstrom H, Cocconcelli PS, Peixe L, Maradona MP, Querol A, Suarez JE, Sundh I, Vlak J, Correia S, Herman L. | EFSA J | 10.2903/j.efsa.2017.4884 | 2017 | | |
| Polysaccharide-Based Injection Matrix for Serial Crystallography. | Nam KH. | Int J Mol Sci | 10.3390/ijms21093332 | 2020 | | |
| Pathogenicity | MDAD: A Special Resource for Microbe-Drug Associations. | Sun YZ, Zhang DH, Cai SB, Ming Z, Li JQ, Chen X. | Front Cell Infect Microbiol | 10.3389/fcimb.2018.00424 | 2018 | |
| Enzymology | Cryogenic (<20 K) helium cooling mitigates radiation damage to protein crystals. | Chinte U, Shah B, Chen YS, Pinkerton AA, Schall CA, Hanson BL. | Acta Crystallogr D Biol Crystallogr | 10.1107/s0907444907005264 | 2007 | |
| Enzymology | Thermoinactivation mechanism of glucose isomerase. | Lim LH, Saville BA. | Appl Biochem Biotechnol | 10.1007/s12010-007-9044-4 | 2007 | |
| Molecular evolutionary engineering of xylose isomerase to improve its catalytic activity and performance of micro-aerobic glucose/xylose co-fermentation in Saccharomyces cerevisiae. | Seike T, Kobayashi Y, Sahara T, Ohgiya S, Kamagata Y, Fujimori KE. | Biotechnol Biofuels | 10.1186/s13068-019-1474-z | 2019 | | |
| Metabolism | Immobilized Trienzymatic System with Enhanced Stabilization for the Biotransformation of Lactose. | Torres P, Batista-Viera F. | Molecules | 10.3390/molecules22020284 | 2017 | |
| Enzymology | Novel Fibrinolytic Protease Producing Streptomyces radiopugnans VITSD8 from Marine Sponges. | D D, S JN, S MK, C SD. | Mar Drugs | 10.3390/md17030164 | 2019 | |
| Enzymology | A preliminary time-of-flight neutron diffraction study of Streptomyces rubiginosus D-xylose isomerase. | Hanson BL, Langan P, Katz AK, Li X, Harp JM, Glusker JP, Schoenborn BP, Bunick GJ. | Acta Crystallogr D Biol Crystallogr | 10.1107/s0907444903025873 | 2004 | |
| Shortening injection matrix for serial crystallography. | Nam KH. | Sci Rep | 10.1038/s41598-019-56135-1 | 2020 | | |
| Safety evaluation of the food enzyme alpha-amylase from the genetically modified Pseudomonas fluorescens strain BD15754. | EFSA Panel on Food Contact Materials, Enzymes and Processing Aids (CEP), Silano V, Barat Baviera JM, Bolognesi C, Cocconcelli PS, Crebelli R, Gott DM, Grob K, Lampi E, Mortensen A, Riviere G, Steffensen IL, Tlustos C, van Loveren H, Vernis L, Zorn H, Glandorf B, Herman L, Aguilera J, Andryszkiewicz M, Liu Y, Chesson A. | EFSA J | 10.2903/j.efsa.2020.6043 | 2020 | | |
| A quasi-Laue neutron crystallographic study of D-xylose isomerase. | Meilleur F, Snell EH, van der Woerd MJ, Judge RA, Myles DA. | Eur Biophys J | 10.1007/s00249-006-0066-6 | 2006 | | |
| High-resolution cryo-EM reconstructions in the presence of substantial aberrations. | Bromberg R, Guo Y, Borek D, Otwinowski Z. | IUCrJ | 10.1107/s2052252520002444 | 2020 | | |
| Safety evaluation of the food enzyme phospholipase C from a genetically modified Komagataella phaffii (strain PRF). | EFSA Panel on Food Contact Materials, Enzymes and Processing Aids (CEP), Silano V, Barat Baviera JM, Bolognesi C, Bruschweiler BJ, Cocconcelli PS, Crebelli R, Gott DM, Grob K, Lampi E, Mortensen A, Riviere G, Steffensen IL, Tlustos C, Van Loveren H, Vernis L, Zorn H, Herman L, Marcon F, Bernasconi G, Gomes A, Liu Y, Chesson A. | EFSA J | 10.2903/j.efsa.2019.5682 | 2019 | | |
| Safety evaluation of the food enzyme alpha-amylase from a genetically modified strain of Bacillus licheniformis (DP-Dzb25). | EFSA Panel on Food Contact Materials, Enzymes and Processing Aids (CEP), Silano V, Barat Baviera JM, Bolognesi C, Cocconcelli PS, Crebelli R, Gott DM, Grob K, Lampi E, Mortensen A, Riviere G, Steffensen IL, Tlustos C, Van Loveren H, Vernis L, Zorn H, Herman L, Glandorf B, Aguilera J, Horn C, Liu Y, Chesson A. | EFSA J | 10.2903/j.efsa.2019.5900 | 2019 | | |
| Enzymology | Chromatographic separation of nucleosides using a cross-linked xylose isomerase crystal stationary phase. | Jokela J, Leisola M. | J Sep Sci | 10.1002/jssc.200401786 | 2004 | |
| Enzymology | Analysis of oscillatory rocking curve by dynamical diffraction in protein crystals. | Suzuki R, Koizumi H, Hirano K, Kumasaka T, Kojima K, Tachibana M. | Proc Natl Acad Sci U S A | 10.1073/pnas.1720098115 | 2018 | |
| Enzymology | Overexpression, crystallization and preliminary X-ray crystallographic analysis of a putative xylose isomerase from Bacteroides thetaiotaomicron. | Cho JW, Han BG, Park SY, Kim SJ, Kim MD, Lee BI. | Acta Crystallogr Sect F Struct Biol Cryst Commun | 10.1107/s1744309113023877 | 2013 | |
| SAD manganese in two crystal forms of glucose isomerase. | Ramagopal UA, Dauter M, Dauter Z. | Acta Crystallogr D Biol Crystallogr | 10.1107/s0907444903005663 | 2003 | | |
| Metabolism | Simultaneous catalysis and product separation by cross-linked enzyme crystals. | Leisola M, Jokela J, Finell J, Pastinen O. | Biotechnol Bioeng | 10.1002/1097-0290(20010220)72:4<501::aid-bit1013>3.0.co;2-j | 2001 | |
| Nylon mesh-based sample holder for fixed-target serial femtosecond crystallography. | Lee D, Baek S, Park J, Lee K, Kim J, Lee SJ, Chung WK, Lee JL, Cho Y, Nam KH. | Sci Rep | 10.1038/s41598-019-43485-z | 2019 | | |
| Enzymology | A novel D-xylose isomerase from the gut of the wood feeding beetle Odontotaenius disjunctus efficiently expressed in Saccharomyces cerevisiae. | Silva PC, Ceja-Navarro JA, Azevedo F, Karaoz U, Brodie EL, Johansson B. | Sci Rep | 10.1038/s41598-021-83937-z | 2021 | |
| EFAMIX, a tool to decompose inline chromatography SAXS data from partially overlapping components. | Konarev PV, Graewert MA, Jeffries CM, Fukuda M, Cheremnykh TA, Volkov VV, Svergun DI. | Protein Sci | 10.1002/pro.4237 | 2022 | | |
| A simple vapor-diffusion method enables protein crystallization inside the HARE serial crystallography chip. | Norton-Baker B, Mehrabi P, Boger J, Schonherr R, von Stetten D, Schikora H, Kwok AO, Martin RW, Miller RJD, Redecke L, Schulz EC. | Acta Crystallogr D Struct Biol | 10.1107/s2059798321003855 | 2021 | | |
| Monitoring and scoring counter-diffusion protein crystallization experiments in capillaries by in situ dynamic light scattering. | Oberthuer D, Melero-Garcia E, Dierks K, Meyer A, Betzel C, Garcia-Caballero A, Gavira JA. | PLoS One | 10.1371/journal.pone.0033545 | 2012 | | |
| Enzymology | Thrombolytic Potential of Novel Thiol-Dependent Fibrinolytic Protease from Bacillus cereus RSA1. | Sharma C, Salem GEM, Sharma N, Gautam P, Singh R. | Biomolecules | 10.3390/biom10010003 | 2019 | |
| Metabolism | Structure and function of the genes involved in mannitol, arabitol and glucitol utilization from Pseudomonas fluorescens DSM50106. | Brunker P, Altenbuchner J, Mattes R. | Gene | 10.1016/s0378-1119(97)00574-x | 1998 | |
| A technique for high-throughput protein crystallization in ionically cross-linked polysaccharide gel beads for X-ray diffraction experiments. | Sugahara M. | PLoS One | 10.1371/journal.pone.0095017 | 2014 | | |
| Metabolism | Lowering the pH optimum of D-xylose isomerase: the effect of mutations of the negatively charged residues. | Cha J, Batt CA. | Mol Cells | 10.1016/s1016-8478(23)13439-x | 1998 | |
| ptxD/Phi as alternative selectable marker system for genetic transformation for bio-safety concerns: a review. | Dormatey R, Sun C, Ali K, Fiaz S, Xu D, Calderon-Urrea A, Bi Z, Zhang J, Bai J. | PeerJ | 10.7717/peerj.11809 | 2021 | | |
| Do protein crystals nucleate within dense liquid clusters? | Maes D, Vorontsova MA, Potenza MA, Sanvito T, Sleutel M, Giglio M, Vekilov PG. | Acta Crystallogr F Struct Biol Commun | 10.1107/s2053230x15008997 | 2015 | | |
| Extranuclear expression of the bacterial xylose isomerase (xylA) and the UDP-glucose dehydrogenase (hasB) genes in yeast with Kluyveromyces lactis linear killer plasmids as vectors. | Schrunder J, Gunge N, Meinhardt F. | Curr Microbiol | 10.1007/s002849900122 | 1996 | | |
| Development of tools to automate quantitative analysis of radiation damage in SAXS experiments. | Brooks-Bartlett JC, Batters RA, Bury CS, Lowe ED, Ginn HM, Round A, Garman EF. | J Synchrotron Radiat | 10.1107/s1600577516015083 | 2017 | | |
| Enzymology | Probing the roles of active site residues in D-xylose isomerase. | Whitaker RD, Cho Y, Cha J, Carrell HL, Glusker JP, Karplus PA, Batt CA. | J Biol Chem | 10.1074/jbc.270.39.22895 | 1995 | |
| Enzymology | Spectroscopic studies on the metal-ion-binding sites of Co2(+)-substituted D-xylose isomerase from Streptomyces rubiginosus. | Sudfeldt C, Schaffer A, Kagi JH, Bogumil R, Schulz HP, Wulff S, Witzel H. | Eur J Biochem | 10.1111/j.1432-1033.1990.tb19410.x | 1990 | |
| Enzymology | A metal-mediated hydride shift mechanism for xylose isomerase based on the 1.6 A Streptomyces rubiginosus structures with xylitol and D-xylose. | Whitlow M, Howard AJ, Finzel BC, Poulos TL, Winborne E, Gilliland GL. | Proteins | 10.1002/prot.340090302 | 1991 | |
| Structural knowledge or X-ray damage? A case study on xylose isomerase illustrating both. | Taberman H, Bury CS, van der Woerd MJ, Snell EH, Garman EF. | J Synchrotron Radiat | 10.1107/s1600577519005599 | 2019 | | |
| An in vitro synthetic biology platform for emerging industrial biomanufacturing: Bottom-up pathway design. | Shi T, Han P, You C, Zhang YPJ. | Synth Syst Biotechnol | 10.1016/j.synbio.2018.05.002 | 2018 | | |
| Interaction between plate make and protein in protein crystallisation screening. | King GJ, Chen KE, Robin G, Forwood JK, Heras B, Thakur AS, Kobe B, Blomberg SP, Martin JL. | PLoS One | 10.1371/journal.pone.0007851 | 2009 | | |
| Metabolism | X- and Q-band EPR studies on the two Mn(2+)-substituted metal-binding sites of D-xylose isomerase. | Bogumil R, Kappl R, Huttermann J, Sudfeldt C, Witzel H. | Eur J Biochem | 10.1111/j.1432-1033.1993.tb17869.x | 1993 | |
| Metabolism | Perturbing the metal site in D-xylose isomerase. Effect of mutations of His-220 on enzyme stability. | Cha J, Cho Y, Whitaker RD, Carrell HL, Glusker JP, Karplus PA, Batt CA. | J Biol Chem | 10.1016/s0021-9258(17)41998-3 | 1994 | |
| Enzymology | Inhibition of D-xylose isomerase by polyols: atomic details by joint X-ray/neutron crystallography. | Kovalevsky A, Hanson BL, Mason SA, Forsyth VT, Fisher Z, Mustyakimov M, Blakeley MP, Keen DA, Langan P. | Acta Crystallogr D Biol Crystallogr | 10.1107/s0907444912024808 | 2012 | |
| Enzymology | Trends in lactose-derived bioactives: synthesis and purification. | Vera C, Guerrero C, Illanes A. | Syst Microbiol Biomanuf | 10.1007/s43393-021-00068-2 | 2022 | |
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How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive15569.20260601.11
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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