Shewanella algae (CCUG 58400, KCTC 22806, JCM 32077)

Name: Shewanella algae (CCUG 58400, KCTC 22806, JCM 32077)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 155616

Type strain

Culture col. no. CCUG 58400 KCTC 22806 JCM 32077

NCBI tax ID(s) 38313

Special Collections CCUG JCM KCTC

History KCTC 22806 <-- K.-K. Kim et al.; Natl. Fish. Res. & Dev. Inst., South Korea; 20-23R.

Links

Shewanella algae CCUG 58400 is an aerobe bacterium that was isolated from Bensasi goatfish,Upeneus bensasi,Intestine.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 411870

KCTC 22806,CCUG 58400

@ref 20215

Last LPSN update 2026-02-09 11:37:39

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Shewanellaceae

Genus Shewanella

Species Shewanella algae

Full scientific name Shewanella algae corrig. Simidu et al. 1990

Synonyms (3)

Shewanella alga
Shewanella upenei
Shewanella haliotis

BacDive ID	Other strains from **Shewanella algae** (23)	Type strain
14062	S. algae OK-1, DSM 9167, ATCC 51192, IAM 14159, NCIMB ... (type strain)
134829	S. algae CIP 72.3
136012	S. algae CIP 101181
137124	S. algae X 127, 567, CIP 67.65
137515	S. algae CIP 68.20
138042	S. algae Monchausse, CIP 102575
138792	S. algae CIP 103562, ATCC 49138
141271	S. algae CCUG 526
141303	S. algae CCUG 789
142550	S. algae CCUG 12945
142836	S. algae CCUG 15259
143597	S. algae CCUG 20533
144446	S. algae CCUG 24987
149900	S. algae CCUG 38646
150237	S. algae CCUG 39355, NCTC 10738, LMG 2265, JCM 20959, ...
150853	S. algae CCUG 42567
152459	S. algae CCUG 46849
152943	S. algae CCUG 48086
153654	S. algae CCUG 50501
155108	S. algae CCUG 56496
161437	S. algae JCM 13988
161438	S. algae JCM 13989
171020	S. algae CIMB 04-7478, CRBIP17.140

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99

Colony morphology

61679

Incubation period3 days

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
61679	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

61679

Oxygen toleranceaerobe

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	formaldehyde oxidation	100	3 of 3
66794	enterobactin biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	vitamin K metabolism	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	gluconeogenesis	100	8 of 8
66794	aerobactin biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	threonine metabolism	100	10 of 10
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ubiquinone biosynthesis	100	7 of 7
66794	palmitate biosynthesis	100	22 of 22
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	photosynthesis	92.86	13 of 14
66794	Entner Doudoroff pathway	90	9 of 10
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	glutamate and glutamine metabolism	85.71	24 of 28
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	NAD metabolism	83.33	15 of 18
66794	pyrimidine metabolism	82.22	37 of 45
66794	pentose phosphate pathway	81.82	9 of 11
66794	purine metabolism	80.85	76 of 94
66794	peptidoglycan biosynthesis	80	12 of 15
66794	hydrogen production	80	4 of 5
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	phenylalanine metabolism	76.92	10 of 13
66794	alanine metabolism	75.86	22 of 29
66794	butanoate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	lipid metabolism	74.19	23 of 31
66794	flavin biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	propionate fermentation	70	7 of 10
66794	cysteine metabolism	66.67	12 of 18
66794	octane oxidation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	d-mannose degradation	66.67	6 of 9
66794	tryptophan metabolism	65.79	25 of 38
66794	methionine metabolism	65.38	17 of 26
66794	glycolysis	64.71	11 of 17
66794	glutathione metabolism	64.29	9 of 14
66794	vitamin B6 metabolism	63.64	7 of 11
66794	oxidative phosphorylation	62.64	57 of 91
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	vitamin B1 metabolism	61.54	8 of 13
66794	lipoate biosynthesis	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	starch degradation	60	6 of 10
66794	histidine metabolism	58.62	17 of 29
66794	arginine metabolism	58.33	14 of 24
66794	non-pathway related	57.89	22 of 38
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	tyrosine metabolism	57.14	8 of 14
66794	lysine metabolism	57.14	24 of 42
66794	degradation of sugar alcohols	56.25	9 of 16
66794	urea cycle	53.85	7 of 13
66794	sulfate reduction	53.85	7 of 13
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	glycine metabolism	50	5 of 10
66794	carnitine metabolism	50	4 of 8
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	cyclohexanol degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	nitrate assimilation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	polyamine pathway	39.13	9 of 23
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	sphingosine metabolism	33.33	2 of 6
66794	cyanate degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	arachidonic acid metabolism	33.33	6 of 18
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	coenzyme M biosynthesis	30	3 of 10
66794	vitamin B12 metabolism	29.41	10 of 34
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	degradation of hexoses	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	metabolism of disaccharids	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	degradation of pentoses	25	7 of 28
66794	lactate fermentation	25	1 of 4
66794	phenol degradation	25	5 of 20
66794	toluene degradation	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	degradation of sugar acids	24	6 of 25
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Fishes

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Host species
61679	Bensasi goatfish,Upeneus bensasi,Intestine	2008	South sea	Republic of Korea	KOR	Asia
67770	Intestine of bensasi goatfish, Upeneus bensasi						Upeneus bensasi

Taxonmaps

69479

Global distribution of 16S sequence GQ260190 (>99% sequence identity) for Shewanella algae from Microbeatlas

Aquatic Samples	730
Soil Samples	118
Animal Samples	3902
Plant Samples	90
Total Samples	4840

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1758038v1 assembly for Shewanella algae CCUG-58400	contig	GCA_017580385	38313.124	8112380676	38313	68.91
67770	ASM283699v1 assembly for Shewanella algae 20-23R	scaffold	GCA_002836995	658447.3	2856000362	38313	68.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Shewanella upenei strain 20-23R 16S ribosomal RNA gene, partial sequence	GQ260190	1468		38313

GC content

@ref	GC-content (mol%)	Method
67770	53.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Shewanella algae 20-23R
NCBI: GCA_002836995.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	93.69	no
125438	aerobic	aerobicⓘ	yes	59.16	yes
125438	spore-forming	spore-formingⓘ	no	89.45	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	88.36	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory Pathways in Shewanella algae Strains: Novel Bacterial Sensory Domains and Functional Insights into Lifestyle Regulation.	Martin-Rodriguez AJ, Higdon SM, Thorell K, Tellgren-Roth C, Sjoling A, Galperin MY, Krell T, Romling U.	mSystems	10.1128/msystems.01518-21	2022
	Reduction of alternative electron acceptors drives biofilm formation in Shewanella algae.	Martin-Rodriguez AJ, Reyes-Darias JA, Martin-Mora D, Gonzalez JM, Krell T, Romling U.	NPJ Biofilms Microbiomes	10.1038/s41522-020-00177-1	2021
Phylogeny	Shewanella upenei sp. nov., a lipolytic bacterium isolated from bensasi goatfish Upeneus bensasi.	Kim KK, Kim YO, Park S, Kang SJ, Nam BH, Kim DN, Oh TK, Yoon JH	J Microbiol	10.1007/s12275-011-0175-5	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#61679	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58400
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Shewanella algae (CCUG 58400, KCTC 22806, JCM 32077)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_017580385

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media