Name: Tumebacillus ginsengisoli DSM 18389
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 1554

Type strain:

Species: Tumebacillus ginsengisoli

Culture col. no.: DSM 18389, KCTC 13942, Gsoil 1105

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 363888 (species)

SI-ID 398221

DSM 18389

Other strains from Tumebacillus ginsengisoli

T. ginsengisoli STH00181(ZIMET), HKI 0181

Section

Tumebacillus ginsengisoli DSM 18389 is an aerobe, mesophilic, rod-shaped bacterium that was isolated from soil of a ginseng field.

rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Alicyclobacillaceae*
	Genus	*Tumebacillus*
	Species	**Tumebacillus ginsengisoli**
	Full Scientific Name (LPSN)	Tumebacillus ginsengisoli Baek et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7369]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7369]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #7369]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7369]			growth	30 °C
[Ref.: #67771]			growth	30 °C

[Ref.: #7369]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

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Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7369]	Sample type/isolated from	soil of a ginseng field
[Ref.: #7369]	Geographic location (country and/or sea, region)	Pocheon Province
[Ref.: #7369]	Country	Republic of Korea
[Ref.: #7369]	Country ISO 3 Code	KOR
[Ref.: #7369]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil of the ginseng field
[Ref.: #67771]	Geographic location (country and/or sea, region)	Pocheon Province
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB245375 (>99% sequence identity) for Tumebacillus ginsengisoli subclade from Microbeatlas

Aquatic Samples	287
Soil Samples	2614
Animal Samples	177
Plant Samples	304
Total Samples	3382

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7369]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7369]	Tumebacillus ginsengisoli gene for 16S rRNA, partial sequence	AB245375	1498	ENA	363888 tax ID

[Ref.: #7369]

GC-content

55.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7369]

Culture collection no.

DSM 18389, KCTC 13942, Gsoil 1105

[Ref.: #71199]

SI-ID 398221

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tumebacillus lipolyticus sp. nov., isolated from river water.	Prasad RV, Bhumika V, Anil Kumar P, Srinivas NRT	Int J Syst Evol Microbiol	10.1099/ijsem.0.000576	2015	*
Phylogeny	Tumebacillus luteolus sp. nov., isolated from soil.	Her J, Srinivasan S, Lee SS	Int J Syst Evol Microbiol	10.1099/ijsem.0.000549	2015	*
Phylogeny	Tumebacillus algifaecis sp. nov., isolated from decomposing algal scum.	Wu YF, Zhang B, Xing P, Wu QL, Liu SJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000240	2015	*
Phylogeny	Tumebacillus flagellatus sp. nov., an alpha-amylase/pullulanase-producing bacterium isolated from cassava wastewater.	Wang Q, Xie N, Qin Y, Shen N, Zhu J, Mi H, Huang R	Int J Syst Evol Microbiol	10.1099/ijs.0.045351-0	2013	*
Phylogeny	Tumebacillus ginsengisoli sp. nov., isolated from soil of a ginseng field.	Baek SH, Cui Y, Kim SC, Cui CH, Yin C, Lee ST, Im WT	Int J Syst Evol Microbiol	10.1099/ijs.0.023358-0	2010	*

References

#7369

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18389

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#71199

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398221.1 )

* These data were automatically processed and therefore are not curated

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