Streptomyces purpureus (DSM 43362, ATCC 27787, JCM 3172)

Name: Streptomyces purpureus (DSM 43362, ATCC 27787, JCM 3172)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15506

Type strain

Strain Designation KA-279

Culture col. no. DSM 43362 ATCC 27787 JCM 3172 KCC A-0172 NRRL B-5403 10 more

NCBI tax ID(s) 1951

Special Collections DSMZ JCM KCTC Wink compendium

Links

Streptomyces purpureus KA-279 is a spore-forming, mesophilic prokaryote that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production spore-forming mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 13366

LMG 19368,ATCC 27787,CCRC 12101,DSM 43362,IFO 13927,IMET 9041,JCM 3172,NCIMB 11311,NRRL B-5403,VKM Ac-1298,KCTC 9187,NBRC 13927,AS 4.1225,BCRC 12101,NCIB 11311,CGMCC 4.1225,VTT E-072761

@ref 20215

Last LPSN update 2025-12-16 09:50:37

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces purpureus

Full scientific name Streptomyces purpureus (Matsumae and Hata 1968) Goodfellow et al. 1986

Synonyms (4)

Kitasatoa nagasakiensis
Kitasatoa diplospora
Kitasatoa purpurea
Kitasatoa kauaiensis

BacDive ID	Other strains from **Streptomyces purpureus** (4)	Type strain
15503	S. purpureus KA 280, DSM 43359, ATCC 27788, JCM 3176, ...
15504	S. purpureus KA 281, DSM 43360, ATCC 21405, JCM 3177, ...
15505	S. purpureus KA 282, DSM 43361, ATCC 27789, KCC A-0178, ...
105507	S. purpureus STH00288(ZIMET), P.simplicissium, NRRL 14996, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	99.6
125439		93.8
125438	positive	91.178

Colony morphology

@ref	Colony color	Incubation period	Medium used
19570	Yellow - Brown	10-14 days	ISP 2
19570	Brown	10-14 days	ISP 3
19570	Brown	10-14 days	ISP 4
19570	Brown	10-14 days	ISP 5
19570	Yellow	10-14 days	ISP 6
19570	Yellow	10-14 days	ISP 7

Multicellular morphology

@ref	Complex name	Complex color	Medium name
19570	Aerial Mycelium	White	ISP 2
19570	Aerial Mycelium	Grey	ISP 3
19570	Aerial Mycelium	White	ISP 4
19570	Aerial Mycelium	Grey	ISP 5
19570	Aerial Mycelium	Grey	ISP 6
19570	Aerial Mycelium	Grey	ISP 7

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
10982	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19570	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19570	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19570	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19570	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19570	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19570	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
10982	OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248)	Medium recipe at MediaDive	Name: OAT FLAKES AGAR WITH YEAST EXTRACT (DSMZ Medium 248) Composition: Agar 20.0 g/l Oat flakes 20.0 g/l Yeast extract 2.0 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
10982	CZAPEK PEPTONE AGAR (DSMZ Medium 83)	Medium recipe at MediaDive	Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
10982	positive	growth	28	mesophilic
19570	positive	optimum	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.36
125439	obligate aerobe	99.7

Spore formation

@ref	Spore description	Type of spore	Confidence
19570	Formation of spore chains (rectiflixibilis), spore surface smooth	spore
125439			97.8
125438			91.049

Compound production

@ref	Compound
10982	chloramphenicol
20216	Chloramphenicol

Halophily

@ref	Salt	Growth	Tested relation	Concentration
19570	NaCl	positive	maximum	5 %

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
19570	22599 ChEBI	arabinose	+
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
19570	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
19570	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
19570	29864 ChEBI	mannitol	+
19570	17268 ChEBI	myo-inositol	+
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
19570	16634 ChEBI	raffinose	+
19570	26546 ChEBI	rhamnose	+
19570	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
19570	18222 ChEBI	xylose	+

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
67770	17698 ChEBI	chloramphenicol
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	+	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
19570	-	+	-	-	-	-	-	+	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
10982	soil
67770	Soil	Kauai Island, HI	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
10982	1	Risk group (German classification) According to TRBA 466
19570	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
124043	ASM4243093v1 assembly for Streptomyces purpureus JCM 3172	contig	GCA_042430935		1951	65.31
66792	ASM1464819v1 assembly for Streptomyces purpureus JCM 3172	scaffold	GCA_014648195	1951.3	1951	35.07

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces purpureus gene for 16S ribosomal RNA, partial sequence, strain: JCM 3172	D43981	120	1951
20218	Streptomyces purpureus 16S rRNA gene, type strain LMG 19368	AJ781324	1476	1951
20218	Streptomyces purpureus gene for 16S rRNA, partial sequence, strain: NBRC 13927	AB184547	1478	1951
20218	Streptomyces purpureus strain NRRL B-5403 16S ribosomal RNA gene, partial sequence	HQ650808	1527	1951
124043	Streptomyces purpureus strain JCM 3172 16S ribosomal RNA gene, partial sequence.	MT760422	1374	1951

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces purpureus JCM 3172
NCBI: GCA_014648195

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	97.80	no
125439	motility	BacteriaNetⓘ	no	93.80	no
125439	gram_stain	BacteriaNetⓘ	positive	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces purpureus JCM 3172
NCBI: GCA_014648195.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.18	no
125438	anaerobic	anaerobicⓘ	no	97.32	no
125438	aerobic	aerobicⓘ	yes	90.36	no
125438	spore-forming	spore-formingⓘ	yes	91.05	yes
125438	thermophilic	thermophileⓘ	no	94.00	no
125438	flagellated	motile2+ⓘ	no	89.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Coupling of Guanine with cyclo-l-Trp-l-Trp Mediated by a Cytochrome P450 Homologue from Streptomyces purpureus.	Yu H, Xie X, Li SM.	Org Lett	10.1021/acs.orglett.8b02051	2018
	Inhibition of Listeria monocytogenes using biofilms of non-pathogenic soil bacteria (Streptomyces spp.) on stainless steel under desiccated condition.	Kim Y, Kim H, Beuchat LR, Ryu JH.	Food Microbiol	10.1016/j.fm.2018.11.007	2019
	Computational design of an imine reductase: mechanism-guided stereoselectivity reversion and interface stabilization.	Wu K, Yan J, Liu Q, Wang X, Wu P, Cao Y, Lu X, Xu Y, Huang J, Shao L.	Chem Sci	10.1039/d3sc04636b	2024
	Phylogenetic and Physiological Diversity of Cultivable Actinomycetes Isolated From Alpine Habitats on the Qinghai-Tibetan Plateau.	Ma A, Zhang X, Jiang K, Zhao C, Liu J, Wu M, Wang Y, Wang M, Li J, Xu S.	Front Microbiol	10.3389/fmicb.2020.555351	2020
Genetics	Genomic Analysis and Surveillance of the Coronavirus Dominant in Ducks in China.	Zhuang QY, Wang KC, Liu S, Hou GY, Jiang WM, Wang SC, Li JP, Yu JM, Chen JM.	PLoS One	10.1371/journal.pone.0129256	2015

References

#10982	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43362
#19570	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces purpureus (DSM 43362, ATCC 27787, JCM 3172)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042430935

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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