Kitasatospora purpeofusca (DSM 40283, ATCC 23952, CBS 935.68)

Name: Kitasatospora purpeofusca (DSM 40283, ATCC 23952, CBS 935.68)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15498

Type strain

Strain Designation H-5080

Culture col. no. DSM 40283 ATCC 23952 CBS 935.68 IFO 12905 ISP 5283 14 more

NCBI tax ID(s) 67352

Special Collections DSMZ JCM KCTC Wink compendium

History <- E.B. Shirling, ISP <- T. Yamaguchi, H-5080 KCC S-0156 <-- G. Nakamura <-- H. Yonehara (IAM 0073) <-- T. Yamaguchi H-5080.

Links

Kitasatospora purpeofusca H-5080 is a mesophilic prokaryote that produces antibiotic compounds and was isolated from soil.

antibiotic compound production mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 264282

ATCC 23952,IFO 12905,DSM 40283,NRRL B-1817,JCM 4156,CCRC 12093,NCIMB 9822,JCM 4665,IAM0073,VKM Ac-1825,CBS 935.68,NBRC 12905,BCRC 12093,KCTC 19967,LMG 20283,NCIB 9822,CGMCC 4.1767,CGMCC 4.1999

@ref 20215

Last LPSN update 2026-02-09 11:21:43

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Kitasatospora

Species Kitasatospora purpeofusca

Full scientific name Kitasatospora purpeofusca (Yamaguchi and Saburi 1955) Labeda et al. 2017

Synonyms (1)

Streptomyces purpeofuscus

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.3
125439		92.1

Multimedia

@ref:	9434
multimedia content:	DSM_40283.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40283.jpg
caption:	Medium 65 28°C
intellectual property rights:	Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9434	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9434	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9434	positive	growth	28	mesophilic
18579	positive	optimum	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	100

Spore formation

@ref	Spore formation	Confidence
125439		98.8

Compound production

@ref	Compound
9434	negamycin
9434	anti-trichomonas antibiotic
20216	Nagemycin

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18579	NaCl	positive	maximum	2.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18579	22599 ChEBI	arabinose	-
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
18579	62968 ChEBI	cellulose	-
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
18579	28757 ChEBI	fructose	-
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
18579	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
18579	29864 ChEBI	mannitol	-
18579	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
18579	16634 ChEBI	raffinose	-
18579	26546 ChEBI	rhamnose	-
18579	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E
18579	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	-	3.2.1.23	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18579	-	-	-	-	-	-	+	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
9434	soil	Japan	JPN	Asia

Taxonmaps

69479

Global distribution of 16S sequence AJ781364 (>99% sequence identity) for Kitasatospora from Microbeatlas

Aquatic Samples	19
Soil Samples	1166
Animal Samples	107
Plant Samples	99
Total Samples	1391

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
18579	1	German classification According to TRBA 466
9434	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM71802v1 assembly for Kitasatospora purpeofusca NRRL B-1817	contig	GCA_000718025	67352.4	2767802052	67352	49.24
67770	ASM71622v1 assembly for Kitasatospora purpeofusca NRRL ISP-5283	scaffold	GCA_000716225	67352.3	2802429271	67352

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces purpeofuscus gene for 16S rRNA, partial sequence	AB122757	564	67352
20218	Streptomyces purpeofuscus strain IFO 12905 16S ribosomal RNA gene, partial sequence	AY999863	1420	67352
20218	Streptomyces purpeofuscus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4665	D44294	121	67352
20218	Streptomyces purpeofuscus gene for 16S rRNA, partial sequence, strain: NBRC 12905	AB184234	1451	67352
9434	Streptomyces purpeofuscus 16S rRNA gene, type strain LMG 20283	AJ781364	1476	67352

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Kitasatospora purpeofusca NRRL ISP-5283
NCBI: GCA_000716225

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	98.80	no
125439	motility	BacteriaNetⓘ	no	92.10	no
125439	gram_stain	BacteriaNetⓘ	positive	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	100.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cellulomonas sp. TKZ-21
PATRIC: 2071633.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.57	no
125438	anaerobic	anaerobicⓘ	no	96.93	no
125438	spore-forming	spore-formingⓘ	no	63.00	no
125438	aerobic	aerobicⓘ	yes	71.86	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	66.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genomic insights into an endophytic Streptomyces sp. VITGV156 for antimicrobial compounds.	Veilumuthu P, Nagarajan T, Magar S, Sundaresan S, Moses LJ, Theodore T, Christopher JG.	Front Microbiol	10.3389/fmicb.2024.1407289	2024
Phylogeny	Kitasatospora acidiphila sp. nov., isolated from pine grove soil, exhibiting antimicrobial potential.	Kim MJ, Roh SG, Kim MK, Park C, Kim S, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.004450	2020

References

#9434	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40283
#18579	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20216	Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) . Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI):
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Kitasatospora purpeofusca (DSM 40283, ATCC 23952, CBS 935.68)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000718025

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media