Name: Streptomyces pseudogriseolus H-16C
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15490

Type strain:

Species: Streptomyces pseudogriseolus

Strain Designation: H-16C

Culture col. no.: DSM 40026, ATCC 12770, ATCC 23949, CBS 933.68, IFO 12902, ISP 5026, JCM 4071, JCM 4663, NBRC 12902, NCIB 9411, RIA 1106, BCRC 12132, CGMCC 4.1800, NCIMB 9411, NCIMB 9814, NRRL B-3288, VKM Ac-1859, VTT E-011968

Strain history: KCC S-0071 <-- Y. Okami H-16C (NIHJ 224).

NCBI tax ID(s): 36817 (species)

SI-ID 389460

ATCC 12770, IFO 12902, NCIB 9411, ATCC 23949, DSM 40026, JCM 4071, JCM 4663, CCRC 12132, NCIMB 9411, NCIMB 9814, NRRL B-3288, VKM Ac-1859, CBS 933.68, NBRC 12902, BCRC 12132, NCIM 2618, NCIB 9814, CGMCC 4.1800, LMG 20252, VTT E-011968

Other strains from Streptomyces pseudogriseolus

S. pseudogriseolus DSM 921, NRRL 3985, UC 5462

Section

Streptomyces pseudogriseolus H-16C is a mesophilic bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces pseudogriseolus**
	Full Scientific Name (LPSN)	Streptomyces pseudogriseolus Okami and Umezawa 1955 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #9225]

Caption:

Medium 65 28°C

[Ref.: #9225]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9225]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9225]

Culture medium growth

[Ref.: #9225]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9225]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9225]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9225]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9225]	Name of produced compound	xanthomycin
[Ref.: #67770]	Name of produced compound	Xanthomycins A and B (H-1159)

	Metabolite production	Metabolite	Production
[Ref.: #67770]		guamecycline ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9225]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ442541 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	2
Soil Samples	112
Animal Samples	49
Plant Samples	3
Total Samples	166

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9225]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces pseudogriseolus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4071	D43999	121	ENA	36817 tax ID	*
[Ref.: #20218]	Streptomyces pseudogriseolus gene for 16S rRNA, partial sequence, strain: NBRC 12902	AB184232	1477	ENA	36817 tax ID	*
[Ref.: #20218]	Streptomyces pseudogriseolus strain NRRL B-3288T 16S ribosomal RNA gene, partial sequence	DQ442541	1492	ENA	36817 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces pseudogriseolus NRRL B-3288	GCA_002154585	scaffold	GenBank	36817 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces pseudogriseolus NRRL B-3288 NCBI: GCA_002154585.1
[Ref.: #69480]	flagellated	no	97.231	no
[Ref.: #69480]	gram-positive	yes	87.839	no
[Ref.: #69480]	anaerobic	no	99.021	no
[Ref.: #69480]	halophile	no	91.529	no
[Ref.: #69480]	spore-forming	yes	96.814	no
[Ref.: #69480]	glucose-util	yes	88.158	no
[Ref.: #69480]	aerobic	yes	92.059	no
[Ref.: #69480]	thermophile	no	98.207	yes
[Ref.: #69480]	motile	no	93.298	no
[Ref.: #69480]	glucose-ferment	no	90.612	no

Availability in culture collections External links

[Ref.: #9225]

Culture collection no.

DSM 40026, ATCC 12770, ATCC 23949, CBS 933.68, IFO 12902, ISP 5026, JCM 4071, JCM 4663, NBRC 12902, NCIB 9411, RIA 1106, BCRC 12132, CGMCC 4.1800, NCIMB 9411, NCIMB 9814, NRRL B-3288, VKM Ac-1859, VTT E-011968

[Ref.: #84577]

SI-ID 389460

References

#9225

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40026

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84577

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389460.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces pseudogriseolus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Streptomyces pseudogriseolus NRRL B-3288

Change proposal

Change proposal