Streptomyces prasinus (DSM 40099, ATCC 19800, CBS 552.68)

Name: Streptomyces prasinus (DSM 40099, ATCC 19800, CBS 552.68)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15483

Type strain

Culture col. no. DSM 40099 ATCC 19800 CBS 552.68 ETH 13815 IFO 12810 13 more

NCBI tax ID(s) 67345

Special Collections DSMZ JCM Wink compendium

History DSMZ <- E.B. Shirling, ISP <- R. Hütter, ETH JCM <-- KCC S-0192 <-- ETH 13815.

Links

Streptomyces prasinus DSM 40099 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 265465

ATCC 19800,IFO 12810,DSM 40099,JCM 4192,CCRC 13681,NRRL B-2712,VKM Ac-1725,JCM 4603,CBS 552.68,NBRC 12810,BCRC 13681,ICMP 144,NBIMCC 1484,CGMCC 4.1920

@ref 20215

Last LPSN update 2026-05-29 08:28:33

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces prasinus

Full scientific name Streptomyces prasinus Ettlinger et al. 1958 (Approved Lists 1980)

Synonyms (1)

Streptomyces bambergiensis

BacDive ID	Other strains from **Streptomyces prasinus** (3)	Type strain
15047	S. prasinus FH 1280, FH 3263, FH3263, FH1280, DSM 40744, ...
15484	S. prasinus FAL K517, DSM 40688
15485	S. prasinus M-3103 (SC 3/68), DSM 40774, ATCC 15825, ...

Morphology

Cell morphology

@ref	Gram stain	Confidence	Motility
125439	positive	99.5
125439		94.318

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9311	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
9311	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)		Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9311	positive	growth	28
18531	positive	optimum	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.586

Spore formation

@ref	Spore formation	Confidence
125439		93.052
125438		90.015

Halophily

@ref	Salt	Growth	Tested relation	Concentration
18531	NaCl	positive	maximum	2.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
18531	22599 ChEBI	arabinose	-
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
18531	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
18531	17234 ChEBI	glucose	+
68368	25094 ChEBI	lysine	-	degradation	from API 20E
18531	29864 ChEBI	mannitol	+
18531	17268 ChEBI	myo-inositol	-
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
18531	16634 ChEBI	raffinose	-
18531	26546 ChEBI	rhamnose	+
18531	17992 ChEBI	sucrose	+
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
18531	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
18531	+	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
9311	soil	Mallorca	Spain	ESP	Europe
67770	Soil	Mallorca	Spain	ESP	Europe

Taxonmaps

69479

Global distribution of 16S sequence DQ026658 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	41
Soil Samples	341
Animal Samples	50
Plant Samples	17
Total Samples	449

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9311	1	Risk group (German classification) According to TRBA 466
18531	1	German classification According to TRBA 466

Phages

@ref	Name	Strain number
124042	Streptomyces phage P23	DSM 40099

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
67770	ASM141970v1 assembly for Streptomyces prasinus NRRL B-2712	scaffold	GCA_001419705	2693429651	67345	0

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces prasinus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4603	D44259	120	67345
20218	Streptomyces prasinus gene for 16S rRNA, partial sequence, strain: NBRC 12810	AB184846	1474	67345
9311	Streptomyces prasinus strain NRRL B-2712 16S ribosomal RNA gene, partial sequence	DQ026658	1498	67345

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM141970v1 assembly for Streptomyces prasinus NRRL B-2712
NCBI: GCA_001419705

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.59	no
125439	motility	BacteriaNetⓘ	no	94.32	no
125439	spore_formation	BacteriaNetⓘ	yes	93.05	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces prasinus NRRL B-2712
NCBI: GCA_001419705.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.77	no
125438	anaerobic	anaerobicⓘ	no	95.73	no
125438	aerobic	aerobicⓘ	yes	89.13	no
125438	spore-forming	spore-formingⓘ	yes	90.02	no
125438	thermophilic	thermophileⓘ	no	94.00	yes
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Ketoolivosyl-tetracenomycin C: a new ketosugar bearing tetracenomycin reveals new insight into the substrate flexibility of glycosyltransferase ElmGT.	Nybo SE, Shabaan KA, Kharel MK, Sutardjo H, Salas JA, Mendez C, Rohr J.	Bioorg Med Chem Lett	10.1016/j.bmcl.2012.01.094	2012
Phylogeny	Streptomyces emeiensis sp. nov., a novel streptomycete from soil in China.	Sun W, Huang Y, Zhang YQ, Liu ZH	Int J Syst Evol Microbiol	10.1099/ijs.0.64934-0	2007

References

#9311	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40099
#18531	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124042	Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà: PhageDive .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces prasinus (DSM 40099, ATCC 19800, CBS 552.68)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Phages

Sequence information

Genome sequences

Genome browser: GCA_001419705

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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