Name: Streptomyces rochei DSM 40319
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15475

Type strain:

Species: Streptomyces rochei

Culture col. no.: DSM 40319, ATCC 25483, CBS 911.69, ETH 31505, IFO 13071, ISP 5319, JCM 4504, NBRC 13071, NRRL 2428, PD 04918, RIA 1263, BCRC 12279, CGMCC 4.1735, CGMCC 4.1755, KCTC 19064, NCAIM B.01841, VKM Ac-627

Strain history: KCC S-0504 <-- IFO 13071 <-- SAJ <-- ISP 5319 <-- Parke, Davis & Co.; PD 04918.

NCBI tax ID(s): 1922 (species)

Other strains from Streptomyces rochei

S. rochei X-15, DSM 40231, ATCC 10739, ATCC ... (type strain)
S. rochei K-5, DSM 40913
S. rochei 5E, ID 3818, DSM 41711
S. rochei 17G, DSM 41722
S. rochei 31A, DSM 41729
S. rochei 33B, DSM 41732
S. rochei 34B, ID 3846, DSM 41735
S. rochei 35A, ID 3848, DSM 41737
S. rochei JA 9767, JA 9769, DSM 46472, IMET ...
S. rochei STH00011(ZIMET), HKI 0011
S. rochei DSM 40916

Section

Streptomyces rochei DSM 40319 is a spore-forming, mesophilic, Gram-positive bacterium that produces antibiotic compounds.

antibiotic compound production
Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces rochei**
	Full Scientific Name (LPSN)	Streptomyces rochei Berger et al. 1953 (Approved Lists 1980)

	Synonym	Streptomyces plicatus
	Synonym	Streptomyces enissocaesilis
	Synonym	Streptomyces geysiriensis
	Synonym	Streptomyces vinaceusdrappus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9457]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #9457]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9457]	Name of produced compound	amicetin
[Ref.: #9457]	Name of produced compound	bamicetin
[Ref.: #9457]	Name of produced compound	plicacetin

	Metabolite	Production
[Ref.: #67770]	amicetin	yes
[Ref.: #67770]	bamicetin	yes
[Ref.: #67770]	plicacetin	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

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Global distribution of 16S sequence AB184291 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples
Soil Samples	12
Animal Samples	16
Plant Samples
Total Samples	28

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces plicatus partial 16S rRNA gene, strain DSM 40319T	AJ291996	869	ENA	1922 tax ID	*
[Ref.: #20218]	Streptomyces plicatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4504	D44194	121	ENA	1922 tax ID	*
[Ref.: #20218]	Streptomyces plicatus gene for 16S rRNA, partial sequence, strain: NBRC 13071	AB184291	1477	ENA	1922 tax ID	*
[Ref.: #20218]	Streptomyces plicatus strain NRRL 2428 16S ribosomal RNA gene, partial sequence	AY999922	1403	ENA	1922 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces plicatus JCM 4504	GCA_014650135	scaffold	GenBank	1922 tax ID
[Ref.: #66792]	Streptomyces plicatus strain JCM 4504	1922.3	wgs	PATRIC	1922 tax ID	*

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GC-content

72 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces plicatus JCM 4504 NCBI: GCA_014650135.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces plicatus strain JCM 4504 PATRIC: 1922.3
[Ref.: #69480]	motile	no	94.437	no
[Ref.: #69480]	gram-positive	yes	90.331	no
[Ref.: #69480]	anaerobic	no	99.203	no
[Ref.: #69480]	aerobic	yes	94.584	no
[Ref.: #69480]	halophile	no	90.288	no
[Ref.: #69480]	spore-forming	yes	96.637	no
[Ref.: #69480]	glucose-util	yes	89.081	no
[Ref.: #69480]	flagellated	no	97.92	no
[Ref.: #69480]	thermophile	no	98.822	no
[Ref.: #69480]	glucose-ferment	no	89.057	no

Availability in culture collections External links

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Culture collection no.

DSM 40319, ATCC 25483, CBS 911.69, ETH 31505, IFO 13071, ISP 5319, JCM 4504, NBRC 13071, NRRL 2428, PD 04918, RIA 1263, BCRC 12279, CGMCC 4.1735, CGMCC 4.1755, KCTC 19064, NCAIM B.01841, VKM Ac-627

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Purification and characterization of salvianolic acid B from Streptomyces sp. M4 possessing antifungal activity against fungal phytopathogens.	Sharma M, Manhas RK	Microbiol Res	10.1016/j.micres.2020.126478	2020	*
Phylogeny	Endophytic actinomycetes from spontaneous plants of Algerian Sahara: indole-3-acetic acid production and tomato plants growth promoting activity.	Goudjal Y, Toumatia O, Sabaou N, Barakate M, Mathieu F, Zitouni A	World J Microbiol Biotechnol	10.1007/s11274-013-1344-y	2013	*

References

#9457

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40319

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Streptomyces plicatus JCM 4504

Streptomyces plicatus strain JCM 4504

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