Streptomyces rochei (DSM 40319, ATCC 25483, CBS 911.69)

Name: Streptomyces rochei (DSM 40319, ATCC 25483, CBS 911.69)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15475

Type strain

Culture col. no. DSM 40319 ATCC 25483 CBS 911.69 ETH 31505 IFO 13071 12 more

NCBI tax ID(s) 1922

Special Collections DSMZ JCM KCTC

History DSMZ <- E.B. Shirling, ISP <- L. Anderson, PD JCM <-- KCC S-0504 <-- IFO 13071 <-- SAJ <-- ISP 5319 <-- Parke, Davis & Co.; PD 04918.

Links

Streptomyces rochei DSM 40319 is a bacterium that produces antibiotic compounds.

antibiotic compound production genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 389322

ATCC 25483,IFO 13071,NRRL 2428,DSM 40319,JCM 4504,CCRC 12279,VKM Ac-627,NRRL B-2428,CBS 911.69,AS 4.1735,NBRC 13071,BCRC 12279,NCAIM B.01841,KCTC 19064,CGMCC 4.1735,CGMCC 4.1755

@ref 20215

Last LPSN update 2026-05-29 08:28:33

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces rochei

Full scientific name Streptomyces rochei Berger et al. 1953 (Approved Lists 1980)

Synonyms (4)

Streptomyces enissocaesilis
Streptomyces plicatus
Streptomyces vinaceusdrappus
Streptomyces geysiriensis

BacDive ID	Other strains from **Streptomyces rochei** (10)	Type strain
15553	S. rochei X-15, DSM 40231, ATCC 10739, ATCC 19245, ... (type strain)
15554	S. rochei K-5, DSM 40913
15555	S. rochei 5E, ID 3818, DSM 41711
15556	S. rochei 17G, DSM 41722
15557	S. rochei 31A, DSM 41729
15558	S. rochei 33B, DSM 41732
15559	S. rochei 34B, ID 3846, DSM 41735
15560	S. rochei 35A, ID 3848, DSM 41737
15561	S. rochei JA 9767, JA 9769, DSM 46472, IMET 43107
159109	S. rochei DSM 40916

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	positive	94.343

Multimedia

@ref:	9457
multimedia content:	DSM_40319.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_40319.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
9457	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
9457	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.438

Spore formation

@ref	Spore formation	Confidence
125438		92.788

Compound production

@ref	Compound
9457	amicetin
9457	bamicetin
9457	plicacetin

Metabolite production

@ref	Metabolite	Production
67770	amicetin
67770	bamicetin
67770	plicacetin

Isolation, sampling and environmental information

Taxonmaps

69479

Global distribution of 16S sequence AB184291 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	0
Soil Samples	12
Animal Samples	16
Plant Samples	0
Total Samples	28

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
9457	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM4266082v1 assembly for Streptomyces plicatus JCM 4504	contig	GCA_042660825			1922	75.35
67770	ASM1465013v1 assembly for Streptomyces plicatus JCM 4504	scaffold	GCA_014650135	1922.3	8109559795	1922	31.19

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces plicatus partial 16S rRNA gene, strain DSM 40319T	AJ291996	869	1922
20218	Streptomyces plicatus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4504	D44194	121	1922
20218	Streptomyces plicatus gene for 16S rRNA, partial sequence, strain: NBRC 13071	AB184291	1477	1922
20218	Streptomyces plicatus strain NRRL 2428 16S ribosomal RNA gene, partial sequence	AY999922	1403	1922
124043	Streptomyces plicatus strain JCM 4504 16S ribosomal RNA gene, partial sequence.	MT760560	1333	1922
124043	Streptomyces plicatus strain NRRL 2428 16S ribosomal RNA gene, partial sequence.	MW452997	1267	1922

GC content

@ref	GC-content (mol%)	Method
67770	72	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4266082v1 assembly for Streptomyces plicatus JCM 4504
NCBI: GCA_042660825

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.44	no
125439	gram_stain	BacteriaNetⓘ	positive	94.34	no
125439	spore_formation	BacteriaNetⓘ	yes	86.05	no
125439	motility	BacteriaNetⓘ	no	89.12	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces plicatus strain JCM 4504
PATRIC: 1922.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.80	no
125438	anaerobic	anaerobicⓘ	no	97.31	no
125438	spore-forming	spore-formingⓘ	yes	92.79	no
125438	aerobic	aerobicⓘ	yes	86.17	no
125438	thermophilic	thermophileⓘ	no	94.50	yes
125438	flagellated	motile2+ⓘ	no	87.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome-Based Analysis of the Potential Bioactivity of the Terrestrial Streptomyces vinaceusdrappus Strain AC-40.	Sedeek AM, Salah I, Kamel HL, Soltan MA, Nour E, Alshammari A, Riaz Rajoka MS, Elsayed TR.	Biology (Basel)	10.3390/biology12030345	2023
Metabolism	Bioprocess development for L-asparaginase production by Streptomyces rochei, purification and in-vitro efficacy against various human carcinoma cell lines.	El-Naggar NE, El-Shweihy NM.	Sci Rep	10.1038/s41598-020-64052-x	2020
	Taxonomy and Polyphasic Characterization of Alkaline Amylase Producing Marine Actinomycete Streptomyces rochei BTSS 1001.	Acharyabhatta A, Kandula SK, Terli R.	Int J Microbiol	10.1155/2013/276921	2013
Metabolism	Biosynthesis of Ag, Se, and ZnO nanoparticles with antimicrobial activities against resistant pathogens using waste isolate Streptomyces enissocaesilis.	Shaaban M, El-Mahdy AM.	IET Nanobiotechnol	10.1049/iet-nbt.2017.0213	2018
	Halotolerant Marine Rhizosphere-Competent Actinobacteria Promote Salicornia bigelovii Growth and Seed Production Using Seawater Irrigation.	Mathew BT, Torky Y, Amin A, Mourad AI, Ayyash MM, El-Keblawy A, Hilal-Alnaqbi A, AbuQamar SF, El-Tarabily KA.	Front Microbiol	10.3389/fmicb.2020.00552	2020
Phylogeny	Reclassification of 15 Streptomyces species as synonyms of Streptomyces albogriseolus, Streptomyces althioticus, Streptomyces anthocyanicus, Streptomyces calvus, Streptomyces griseoincarnatus, Streptomyces mutabilis, Streptomyces pilosus or Streptomyces rochei.	Komaki H.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004718	2019
Pathogenicity	Screening of endophytic Streptomycetes isolated from Parthenium hysterophorus L. against nosocomial pathogens.	Tanvir R, Sajid I, Hasnain S.	Pak J Pharm Sci		2013
	Plant Growth Promoting and Biocontrol Activity of Streptomyces spp. as Endophytes.	Vurukonda SSKP, Giovanardi D, Stefani E.	Int J Mol Sci	10.3390/ijms19040952	2018
Pathogenicity	Purification and characterization of salvianolic acid B from Streptomyces sp. M4 possessing antifungal activity against fungal phytopathogens.	Sharma M, Manhas RK	Microbiol Res	10.1016/j.micres.2020.126478	2020
Phylogeny	Endophytic actinomycetes from spontaneous plants of Algerian Sahara: indole-3-acetic acid production and tomato plants growth promoting activity.	Goudjal Y, Toumatia O, Sabaou N, Barakate M, Mathieu F, Zitouni A	World J Microbiol Biotechnol	10.1007/s11274-013-1344-y	2013

References

#9457	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40319
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces rochei (DSM 40319, ATCC 25483, CBS 911.69)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Metabolite production

Isolation, sampling and environmental information

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042660825

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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