Name: Streptomyces platensis DSM 40041
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15474

Type strain:

Species: Streptomyces platensis

Culture col. no.: DSM 40041, ATCC 13865, ATCC 23948, CBS 310.56, CBS 932.68, DSM 41241, ETH 20739, IFO 12901, IFO 14007, ISP 5041, JCM 4189, JCM 4662, KCC S-0189, KCC S-0662, NBRC 12901, NBRC 14007, NRRL 2364, RIA 1110, BCRC 11898, CCUG 11118, CGMCC 4.1975, KCTC 1088, MTCC 3026, NCAIM B.01481, NCIMB 9607, NRRL B-5486, VKM Ac-1288

Strain history: KCC S-0189 <-- M. Hamada <-- Y. Okami (NIHJ 407) <-- PSA 150.

NCBI tax ID(s): 58346 (species)

SI-ID 45546

ATCC 13865, NRRL 2364, ATCC 23948, IFO 12901, DSM 40041, DSM 41241, IFO 14007, JCM 4189, JCM 4662, CCRC 11898, CCUG 11118, NCIMB 9607, NRRL B-5486, VKM Ac-1288, NRRL B-2364, CBS 932.68, CBS 310.56, KCTC 1088, NBRC 12901, NBRC 14007, BCRC 11898, NCAIM B.01481, NCIB 9607, CGMCC 4.1975

Special Collections

Other strains from Streptomyces platensis

Section

Streptomyces platensis DSM 40041 is a spore-forming bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces platensis**
	Full Scientific Name (LPSN)	Streptomyces platensis Tresner and Backus 1956 (Approved Lists 1980)

	Synonym	Streptomyces libani subsp. rufus
	Synonym	Streptomyces hygroscopicus subsp. glebosus
	Synonym	"Streptomyces* glebosus"*

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #9120]

Intellectual property rights:

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9120]

Culture medium composition

expand / minimize

[Ref.: #9120]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9120]

Culture medium growth

[Ref.: #9120]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9120]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9120]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.498

[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.989
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9120]	Name of produced compound	oxytetracycline
[Ref.: #9120]	Name of produced compound	terramycine

[Ref.: #67770]

Observation

quinones: MK-9(H₈), MK-9(H₆), MK-9(H₄)

	Metabolite production	Metabolite	Production
[Ref.: #67770]		oxytetracycline ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9120]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9120]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces platensis strain CGMCC 4.1975 16S ribosomal RNA gene, partial sequence	HQ244461	1373	GenBank ENA	58346 tax ID	*
[Ref.: #20218]	Streptomyces platensis strain DSM 40041 16S ribosomal RNA gene, partial sequence	GU383117	782	GenBank ENA	58346 tax ID	*
[Ref.: #20218]	Streptomyces platensis gene for 16S rRNA, partial sequence	AB122745	565	GenBank ENA	58346 tax ID	*
[Ref.: #20218]	Streptomyces platensis gene for 16S rRNA	AB045882	1488	GenBank ENA	58346 tax ID	*
[Ref.: #20218]	Streptomyces platensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4662	D44292	121	GenBank ENA	58346 tax ID	*
[Ref.: #20218]	Streptomyces platensis gene for 16S rRNA, partial sequence, strain: NBRC 12901	AB184231	1475	GenBank ENA	58346 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces platensis DSM 40041	GCA_002119195	contig	GenBank ENA	58346 tax ID
[Ref.: #66792]	Streptomyces platensis ATCC 23948	GCA_008704855	complete	GenBank ENA	58346 tax ID	*
[Ref.: #66792]	Streptomyces platensis strain ATCC 23948	58346.16	complete	PATRIC	58346 tax ID	*
[Ref.: #66792]	Streptomyces platensis strain DSM 40041	58346.12	wgs	PATRIC	58346 tax ID	*
[Ref.: #66792]	Streptomyces platensis DSM 40041	2862650393	draft	JGI IMG/M	58346 tax ID	*

[Ref.: #67770]

GC-content

71.2 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces platensis ATCC 23948 NCBI: GCA_008704855.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces platensis ATCC 23948 NCBI: GCA_008704855.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	89.879	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.001	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.498	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.989	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	no

Availability in culture collections External links

[Ref.: #9120]

Culture collection no.

DSM 40041, ATCC 13865, ATCC 23948, CBS 310.56, CBS 932.68, DSM 41241, ETH 20739, IFO 12901, IFO 14007, ISP 5041, JCM 4189, JCM 4662, KCC S-0189, KCC S-0662, NBRC 12901, NBRC 14007, NRRL 2364, RIA 1110, BCRC 11898, CCUG 11118, CGMCC 4.1975, KCTC 1088, MTCC 3026, NCAIM B.01481, NCIMB 9607, NRRL B-5486, VKM Ac-1288

[Ref.: #84562]

SI-ID 45546

Literature:

Only first 10 entries are displayed. Click here to see all.

	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequences of Three Actinobacteria Strains Presenting New Candidate Organisms with High Potentials for Specific P450 Cytochromes.	Grumaz C, Vainshtein Y, Kirstahler P, Luetz S, Kittelmann M, Schroer K, Eggimann FK, Czaja R, Vogel A, Hilberath T, Worsch A, Girhard M, Urlacher VB, Sandberg M, Sohn K	Genome Announc	10.1128/genomeA.00532-17	2017	*
Metabolism	A novel cytochrome P450 mono-oxygenase from Streptomyces platensis resembles activities of human drug metabolizing P450s.	Worsch A, Eggimann FK, Girhard M, von Buhler CJ, Tieves F, Czaja R, Vogel A, Grumaz C, Sohn K, Lutz S, Kittelmann M, Urlacher VB	Biotechnol Bioeng	10.1002/bit.26781	2018	*
Metabolism	Production of transglutaminase by Streptomyces isolates in solid-state fermentation.	Nagy V, Szakacs G	Lett Appl Microbiol	10.1111/j.1472-765X.2008.02395.x	2008	*
Enzymology	Production of L-leucine aminopeptidase by selected Streptomyces isolates.	Nagy V, Nampoothiri KM, Pandey A, Rahulan R, Szakacs G	J Appl Microbiol	10.1111/j.1365-2672.2007.03546.x	2007	*
Metabolism	N-demethylation of lergotrile by Streptomyces platensis.	Davis PJ, Glade JC, Clark AM, Smith RV	Appl Environ Microbiol	10.1128/aem.38.5.891-893.1979	1979	*
	Evaluation of P450 monooxygenase activity in lyophilized recombinant E. coli cells compared to resting cells.	Hilberath T, Raffaele A, Windeln LM, Urlacher VB	AMB Express	10.1186/s13568-021-01319-0	2021	*

References

#9120

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40041

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84562

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45546.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces platensis ATCC 23948

Streptomyces platensis ATCC 23948

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