Name: Streptomyces phaeochromogenes DSM 40073
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15463

Type strain:

Species: Streptomyces phaeochromogenes

Culture col. no.: DSM 40073, ATCC 23945, ATCC 3338, CBS 929.68, ETH 20197, IFO 12898, IMRU 3338, ISP 5073, KCC S-0070, KCC S-0659, NBRC 12898, NCIMB 8505, RIA 1119, JCM 4070, BCRC 12484, CBS 282.30, CBS 288.60, CECT 3070, CGMCC 4.0613, CGMCC 4.1308, IFM 1051, IFO 3180, IMET 40355, JCM 4659, KCTC 9763, LMG 19348, NBRC 3180, NRRL B-1248, NRRL B-3010, RIA 61, VKM Ac-1002, VTT E-82160

Strain history: KCC S-0070 <-- H. Yonehara <-- IFO 3180 <-- ATCC 3338 <-- IMRU 3338.

NCBI tax ID(s): 1923 (species)

SI-ID 389311

LMG 19348, ATCC 23945, ATCC 3338, CCRC 12484, DSM 40073, IFO 12898, IFO 3180, IMET 40355, JCM 4070, NCIMB 8505, NRRL B-1248, NRRL B-3010, VKM Ac-1002, JCM 4659, NCIB 8505, DSM 40788, NRRL B-1266, CBS 929.68, CBS 288.60, CBS 282.30, AS 4.0613, CECT 3070, CCM 3193, VTT E-82160, KCTC 9763, NBRC 12898, NBRC 3180, BCRC 12484, ICMP 483, NCIM 2504, CGMCC 4.0613, CGMCC 4.1308

Special Collections

Other strains from Streptomyces phaeochromogenes

Section

Streptomyces phaeochromogenes DSM 40073 is a spore-forming bacterium that builds an aerial mycelium.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces phaeochromogenes**
	Full Scientific Name (LPSN)	Streptomyces phaeochromogenes (Conn 1917) Waksman 1957 (Approved Lists 1980)

	Synonym	"Actinomyces* pheochromogenus"*
	Synonym	Streptomyces ederensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %90.685

[Ref.: #19399]	Colony color	Brown
[Ref.: #19399]	Incubation period	10-14 days
[Ref.: #19399]	Cultivation medium used	ISP 2

[Ref.: #19399]	Incubation period	10-14 days
[Ref.: #19399]	Cultivation medium used	ISP 3

[Ref.: #19399]	Incubation period	10-14 days
[Ref.: #19399]	Cultivation medium used	ISP 4

[Ref.: #19399]	Incubation period	10-14 days
[Ref.: #19399]	Cultivation medium used	ISP 5

[Ref.: #19399]	Incubation period	10-14 days
[Ref.: #19399]	Cultivation medium used	ISP 6

[Ref.: #19399]	Incubation period	10-14 days
[Ref.: #19399]	Cultivation medium used	ISP 7

[Ref.: #19399]	Multicellular complex forming ability	yes
[Ref.: #19399]	Multicellular complex name	Aerial Mycelium
[Ref.: #19399]	Multicellular complex color	Grey
[Ref.: #19399]	Medium Name (multicellularity)	ISP 2

[Ref.: #19399]	Multicellular complex forming ability	yes
[Ref.: #19399]	Multicellular complex name	Aerial Mycelium
[Ref.: #19399]	Multicellular complex color	Grey
[Ref.: #19399]	Medium Name (multicellularity)	ISP 3

[Ref.: #19399]	Multicellular complex forming ability	yes
[Ref.: #19399]	Multicellular complex name	Aerial Mycelium
[Ref.: #19399]	Multicellular complex color	Grey
[Ref.: #19399]	Medium Name (multicellularity)	ISP 4

[Ref.: #19399]	Multicellular complex forming ability	yes
[Ref.: #19399]	Multicellular complex name	Aerial Mycelium
[Ref.: #19399]	Multicellular complex color	Grey
[Ref.: #19399]	Medium Name (multicellularity)	ISP 5

[Ref.: #19399]	Multicellular complex forming ability	yes
[Ref.: #19399]	Multicellular complex name	Aerial Mycelium
[Ref.: #19399]	Multicellular complex color	White
[Ref.: #19399]	Medium Name (multicellularity)	ISP 6

[Ref.: #19399]	Multicellular complex forming ability	yes
[Ref.: #19399]	Multicellular complex name	Aerial Mycelium
[Ref.: #19399]	Multicellular complex color	Grey
[Ref.: #19399]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9271]	growth	28 °C
[Ref.: #19399]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #19399]	Spore description	Formation of spore chains: retinaculiapetri, spore surface: smooth, Fragmentation: +
[Ref.: #19399]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.536

[Ref.: #9271]	Name of produced compound	tyrosinate
[Ref.: #20216]	Name of produced compound	Tyrosinase
[Ref.: #20216]	Name of produced compound	Penicillin derivatives

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19399]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19399]	fructose ChEBI	+/-
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19399]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19399]	mannitol ChEBI	-
[Ref.: #19399]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19399]	raffinose ChEBI	-
[Ref.: #19399]	rhamnose ChEBI	+
[Ref.: #19399]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19399]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19399]	265	+	+	-	-	-	+	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9271]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19399]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces phaeochromogenes strain ATCC 23945 16S ribosomal RNA gene, partial sequence	EU594468	1466	GenBank ENA	1923 tax ID	*
[Ref.: #20218]	Streptomyces phaeochromogenes strain ATCC 3338 16S ribosomal RNA gene, partial sequence	EU594469	1475	GenBank ENA	1923 tax ID	*
[Ref.: #20218]	Streptomyces phaeochromogenes 16S ribosomal RNA gene, partial sequence	AF500071	1450	GenBank ENA	1923 tax ID	*
[Ref.: #20218]	Streptomyces phaeochromogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 4659	D44289	120	GenBank ENA	1923 tax ID	*
[Ref.: #20218]	Streptomyces phaeochromogenes gene for 16S rRNA, partial sequence, strain: NBRC 12898	AB184228	1476	GenBank ENA	1923 tax ID	*
[Ref.: #20218]	Streptomyces phaeochromogenes gene for 16S rRNA, partial sequence, strain: NBRC 3180	AB184738	1479	GenBank ENA	1923 tax ID	*
[Ref.: #20218]	Streptomyces phaeochromogenes strain NRRL B-1248 16S ribosomal RNA gene, partial sequence	EU594472	1492	GenBank ENA	1923 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces phaeochromogenes NRRL B-1248	GCA_001418655	scaffold	GenBank ENA	1923 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces phaeochromogenes NRRL B-1248 NCBI: GCA_001418655.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	90.685	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.84	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.719	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.536	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	no

Availability in culture collections External links

[Ref.: #9271]

Culture collection no.

DSM 40073, ATCC 23945, ATCC 3338, CBS 929.68, ETH 20197, IFO 12898, IMRU 3338, ISP 5073, KCC S-0070, KCC S-0659, NBRC 12898, NCIMB 8505, RIA 1119, JCM 4070, BCRC 12484, CBS 282.30, CBS 288.60, CECT 3070, CGMCC 4.0613, CGMCC 4.1308, IFM 1051, IFO 3180, IMET 40355, JCM 4659, KCTC 9763, LMG 19348, NBRC 3180, NRRL B-1248, NRRL B-3010, RIA 61, VKM Ac-1002, VTT E-82160

[Ref.: #84551]

SI-ID 389311

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces albicerus sp. nov., a novel actinomycete isolated from the sediments of the Tailan River in Xinjiang, China.	Sun B, Yuan L, Xia Z, Wan C, Zhang L	Arch Microbiol	10.1007/s00203-020-01871-6	2020	*
Phylogeny	Two new species of the genus Streptomyces: Streptomyces camponoti sp. nov. and Streptomyces cuticulae sp. nov. isolated from the cuticle of Camponotus japonicus Mayr.	Piao C, Zheng W, Li Y, Liu C, Jin L, Song W, Yan K, Wang X, Xiang W	Arch Microbiol	10.1007/s00203-017-1353-6	2017	*

References

#9271

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40073

#19399

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#84551

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389311.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces phaeochromogenes NRRL B-1248

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