Streptomyces phaeochromogenes DSM 40073 is a spore-forming, mesophilic prokaryote that builds an aerial mycelium.
spore-forming mesophilic genome sequence 16S sequence
SI-ID 389311
| @ref 20215 |
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Last LPSN update
2025-12-16 09:50:36 |
| Domain Bacillati |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Kitasatosporales |
| Family Streptomycetaceae |
| Genus Streptomyces |
| Species Streptomyces phaeochromogenes |
| Full scientific name Streptomyces phaeochromogenes corrig. (Conn 1917) Waksman 1957 (Approved Lists 1980) |
| Synonyms (2) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9271 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive  | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 19399 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 19399 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 19399 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 19399 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 19399 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 19399 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 9271 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | Medium recipe at MediaDive | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water | ||
| 9271 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | Medium recipe at MediaDive | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water |
| @ref | Chebi-ID | Metabolite | Utilization activity | |
|---|---|---|---|---|
| 19399 | 22599 ChEBI | arabinose | + | |
| 68368 | 29016 ChEBI | arginine | + | from API 20E |
| 68368 | 16947 ChEBI | citrate | - | from API 20E |
| 19399 | 28757 ChEBI | fructose | +/- | |
| 68368 | 5291 ChEBI | gelatin | + | from API 20E |
| 19399 | 17234 ChEBI | glucose | + | |
| 68368 | 25094 ChEBI | lysine | - | from API 20E |
| 19399 | 29864 ChEBI | mannitol | - | |
| 19399 | 17268 ChEBI | myo-inositol | - | |
| 68368 | 18257 ChEBI | ornithine | - | from API 20E |
| 19399 | 16634 ChEBI | raffinose | - | |
| 19399 | 26546 ChEBI | rhamnose | + | |
| 19399 | 17992 ChEBI | sucrose | + | |
| 68368 | 27897 ChEBI | tryptophan | - | from API 20E |
| 68368 | 16199 ChEBI | urea | + | from API 20E |
| 19399 | 18222 ChEBI | xylose | - |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68368 | gelatinase | + | from API 20E | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | + | 4.1.99.1 | from API 20E |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| @ref | Description | Assembly level | INSDC accession | IMG accession | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 67770 | ASM141865v1 assembly for Streptomyces phaeochromogenes NRRL B-1248 | scaffold | GCA_001418655   | 2867727567  | 1923 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Streptomyces phaeochromogenes strain ATCC 23945 16S ribosomal RNA gene, partial sequence | EU594468 | 1466 |  | 1923 | |
| 20218 | Streptomyces phaeochromogenes strain ATCC 3338 16S ribosomal RNA gene, partial sequence | EU594469 | 1475 | | 1923 | |
| 20218 | Streptomyces phaeochromogenes 16S ribosomal RNA gene, partial sequence | AF500071 | 1450 | | 1923 | |
| 20218 | Streptomyces phaeochromogenes gene for 16S ribosomal RNA, partial sequence, strain: JCM 4659 | D44289 | 120 | | 1923 | |
| 20218 | Streptomyces phaeochromogenes gene for 16S rRNA, partial sequence, strain: NBRC 12898 | AB184228 | 1476 | | 1923 | |
| 20218 | Streptomyces phaeochromogenes gene for 16S rRNA, partial sequence, strain: NBRC 3180 | AB184738 | 1479 | | 1923 | |
| 20218 | Streptomyces phaeochromogenes strain NRRL B-1248 16S ribosomal RNA gene, partial sequence | EU594472 | 1492 | | 1923 | |
| 124043 | Streptomyces phaeochromogenes strain NBRC 3180(T) 16S ribosomal RNA gene, partial sequence. | MN686622 | 531 | | 1923 | |
| 124043 | Streptomyces phaeochromogenes strain NBRC 3180 16S ribosomal RNA gene, partial sequence. | PV264878 | 1337 | | 1923 | |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Phylogeny | Streptomyces globosus DK15 and Streptomyces ederensis ST13 as new producers of factumycin and tetrangomycin antibiotics. | Charousova I, Medo J, Hleba L, Javorekova S. | Braz J Microbiol | 10.1016/j.bjm.2017.12.007 | 2018 | |
| Genome Mining and Targeted Discovery of Twistane-Containing Angucyclinones from Marine Streptomyces phaeochromogenes XSA2. | Hao X, Wang ZJ, Shi X, Liu Y, Yan P, Yang Q, Ren X, Li X, Sui H, Li F, Zhang Y, Bian X, Zhou H. | Org Lett | 10.1021/acs.orglett.5c00514 | 2025 | | |
| Genetics | Revealing the Existence of Diverse Strategies for Phosphorus Solubilization and Acquisition in Plant-Growth Promoting Streptomyces misionensis SwB1. | Chen Y, Gao Z, Yang Y, Liu Q, Jiang L, Chen J, Zhou X, Zhang L, Ji Y, Tu J, Xiao Z, Li P, Li C. | Microorganisms | 10.3390/microorganisms13020378 | 2025 | |
| Phylogeny | Genomic insight into the Streptomyces aurantiacus clade: reclassification of Streptomyces ederensis as a later heterotypic synonym of Streptomyces umbrinus and Streptomyces glomeroaurantiacus as a later heterotypic synonym of Streptomyces aurantiacus. | Saygin H. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004797 | 2021 | |
| Expanding Polycyclic Tetramate Macrolactam (PoTeM) Core Structure Diversity by Chemo-Enzymatic Synthesis and Bioengineering. | Schuler S, Einsiedler M, Evers JK, Malay M, Uka V, Schneider S, Gulder TAM. | Angew Chem Int Ed Engl | 10.1002/anie.202420335 | 2025 | | |
| Microbial degradation of organophosphorus pesticides using whole cells and enzyme extracts. | Santillan JY, Muzlera A, Molina M, Lewkowicz ES, Iribarren AM. | Biodegradation | 10.1007/s10532-020-09918-7 | 2020 | | |
| Construction and Effect Analysis of a Mixed Actinomycete Flora for Straw Returning to Albic Soil in Northeast China. | Gong X, Yu Y, Lv G, Hao Y, Wang L, Ma J, Jiang Y, Zou J, Li J, Wang Q. | Microorganisms | 10.3390/microorganisms13020385 | 2025 | | |
| Insecticidal activity of a Moroccan strain of Streptomyces phaeochromogenes LD-37 on larvae, pupae and adults of the Mediterranean fruit fly, Ceratitis capitata (Diptera: Tephritidae). | Samri SE, Baz M, Ghalbane I, El Messoussi S, Zitouni A, El Meziane A, Barakate M. | Bull Entomol Res | 10.1017/s000748531600078x | 2017 | | |
| A plug-and-play system for polycyclic tetramate macrolactam production and functionalization. | Glockle A, Schuler S, Einsiedler M, Gulder TAM. | Microb Cell Fact | 10.1186/s12934-024-02630-8 | 2025 | | |
| Light inducible gene expression system for Streptomyces. | Noya R, Murakoshi K, Fukuda M, Yushina T, Kitamura K, Kobayashi M, Takano H. | Sci Rep | 10.1038/s41598-024-76860-6 | 2024 | | |
| Phylogeny | Molecular and phenotypic comparison of phaeochromycin-producing strains of Streptomyces phaeochromogenes and Streptomyces ederensis. | Ritacco FV, Eveleigh DE. | J Ind Microbiol Biotechnol | 10.1007/s10295-008-0367-0 | 2008 | |
| In Silico Characterization and Virtual Screening of GntR/HutC Family Transcriptional Regulator MoyR: A Potential Monooxygenase Regulator in Mycobacterium tuberculosis. | Abeywickrama TD, Perera IC. | Biology (Basel) | 10.3390/biology10121241 | 2021 | | |
| Direct repeat sequences are essential for function of the cis-acting locus of transfer (clt) of Streptomyces phaeochromogenes plasmid pJV1. | Franco B, Gonzalez-Ceron G, Servin-Gonzalez L. | Plasmid | 10.1016/s0147-619x(03)00063-5 | 2003 | | |
| Oxidation of lincomycin by hydrogen peroxide restricts its potential biotransformation with haloperoxidases. | Pospisil S, Sedmera P, Halada P, Spizek J. | Folia Microbiol (Praha) | 10.1007/bf02814424 | 2001 | | |
| Phylogenetic and Physiological Diversity of Cultivable Actinomycetes Isolated From Alpine Habitats on the Qinghai-Tibetan Plateau. | Ma A, Zhang X, Jiang K, Zhao C, Liu J, Wu M, Wang Y, Wang M, Li J, Xu S. | Front Microbiol | 10.3389/fmicb.2020.555351 | 2020 | | |
| Genetics | Sequence and functional analysis of the Streptomyces phaeochromogenes plasmid pJV1 reveals a modular organization of Streptomyces plasmids that replicate by rolling circle. | Servin-Gonzalez L, Sampieri AI, Cabello J, Galvan L, Juarez V, Castro C. | Microbiology (Reading) | 10.1099/13500872-141-10-2499 | 1995 | |
| Enzymology | Evidence for the existence of isozymes of glucose isomerase from Streptomyces phaeochromogenes. | Basuki W, Iizuka M, Ito K, Furuichi K, Minamiura N. | Biosci Biotechnol Biochem | 10.1271/bbb.56.180 | 1992 | |
| Enzymology | Cloning, expression and sequence analysis of the SphI restriction-modification system. | Guthrie EP, Quinton-Jager T, Moran LS, Slatko BE, Kucera RB, Benner JS, Wilson GG, Brooks JE. | Gene | 10.1016/s0378-1119(96)00415-5 | 1996 | |
| Identification and properties of a novel clt locus in the Streptomyces phaeochromogenes plasmid pJV1. | Servin-Gonzalez L. | J Bacteriol | 10.1128/jb.178.14.4323-4326.1996 | 1996 | | |
| Genetics | Relationship between the replication functions of Streptomyces plasmids pJV1 and pIJ101. | Servin-Gonzalez L. | Plasmid | 10.1006/plas.1993.1040 | 1993 | |
| A versatile shuttle cosmid vector for use in Escherichia coli and actinomycetes. | Denis F, Brzezinski R. | Gene | 10.1016/0378-1119(92)90611-r | 1992 | | |
| Enzymology | Sequence-specific DNA affinity chromatography: application to the purification of EcoRI and SphI. | Vlatakis G, Bouriotis V. | Anal Biochem | 10.1016/0003-2697(91)90340-y | 1991 | |
| Enzymology | Purification and molecular and catalytic properties of bromoperoxidase from Streptomyces phaeochromogenes. | van Pee KH, Lingens F. | J Gen Microbiol | 10.1099/00221287-131-8-1911 | 1985 | |
| Properties of in vitro recombinant derivatives of pJV1, a multi-copy plasmid from Streptomyces phaeochromogenes. | Bailey CR, Bruton CJ, Butler MJ, Chater KF, Harris JE, Hopwood DA. | J Gen Microbiol | 10.1099/00221287-132-8-2071 | 1986 | | |
| Enzymology | Arogenate dehydrogenase from Streptomyces phaeochromogenes. Purification and properties. | Keller B, Keller E, Lingens F. | Biol Chem Hoppe Seyler | 10.1515/bchm3.1985.366.2.1063 | 1985 | |
| Syntheses of S-substituted L-homocysteine derivatives by cystathionine gamma-lyase of Streptomyces phaeochromogenes. | Kanzaki H, Kobayashi M, Nagasawa T, Yamada H. | Agric Biol Chem | 10.1080/00021369.1986.10867398 | 1986 | | |
| Phylogeny | Culturable Endophytes Diversity Isolated from Paeonia ostii and the Genetic Basis for Their Bioactivity. | Yang RX, Zhang SW, Xue D, Xuan JH, Zhang YB, Peng BB. | Pol J Microbiol | 10.21307/pjm-2018-052 | 2018 | |
| Enzymology | Detection of a bromoperoxidase in Streptomyces phaeochromogenes. | van Pee KH, Lingens F. | FEBS Lett | 10.1016/0014-5793(84)81005-4 | 1984 | |
| Genetics | Diverse Cone-Snail Species Harbor Closely Related Streptomyces Species with Conserved Chemical and Genetic Profiles, Including Polycyclic Tetramic Acid Macrolactams. | Quezada M, Licona-Cassani C, Cruz-Morales P, Salim AA, Marcellin E, Capon RJ, Barona-Gomez F. | Front Microbiol | 10.3389/fmicb.2017.02305 | 2017 | |
| Enzymology | Cystathionine gamma-lyase of Streptomyces phaeochromogenes. The occurrence of cystathionine gamma-lyase in filamentous bacteria and its purification and characterization. | Nagasawa T, Kanzaki H, Yamada H. | J Biol Chem | 10.1016/s0021-9258(18)90978-6 | 1984 | |
| Enzymology | New ikarugamycin derivatives with antifungal and antibacterial properties from Streptomyces zhaozhouensis. | Lacret R, Oves-Costales D, Gomez C, Diaz C, de la Cruz M, Perez-Victoria I, Vicente F, Genilloud O, Reyes F. | Mar Drugs | 10.3390/md13010128 | 2014 | |
| Enzymology | [Production of glucose isomerase by Streptomyces phaeochromogenes]. | Faloci MM, Yantorno OM, Mazza LA, Balatti AP. | Rev Argent Microbiol | 1983 | | |
| Enzymology | Characterization of a site-specific restriction endonuclease SphI from Streptomyces phaeochromogenes. | Fuchs LY, Covarrubias L, Escalante L, Sanchez S, Bolivar F. | Gene | 10.1016/0378-1119(80)90141-9 | 1980 | |
| Metabolism | Insight into the active site of Streptomyces cystathionine gamma-lyase based on the results of studies on its substrate specificity. | Kanzaki H, Nagasawa T, Yamada H. | Biochim Biophys Acta | 10.1016/0167-4838(87)90230-5 | 1987 | |
| Use of Endophytic and Rhizosphere Actinobacteria from Grapevine Plants To Reduce Nursery Fungal Graft Infections That Lead to Young Grapevine Decline. | Alvarez-Perez JM, Gonzalez-Garcia S, Cobos R, Olego MA, Ibanez A, Diez-Galan A, Garzon-Jimeno E, Coque JJR. | Appl Environ Microbiol | 10.1128/aem.01564-17 | 2017 | | |
| Enzymology | Studies on the combined action of amylases and glucose isomerase on starch and its hydrolyzate. Part I. Production, extraction, purification and kinetic behavior of glucose isomerase. | Attia RM, Ghali Y, Roushdi M, Eldin MA. | Z Ernahrungswiss | 10.1007/bf02021391 | 1980 | |
| Enzymology | D-Glucose isomerase: constitutive and catabolite repression-resistant mutants of Streptomyces phaeochromogenes. | Sanchez S, Quinto CM. | Appl Microbiol | 10.1128/am.30.5.750-754.1975 | 1975 | |
| Immobilization of Glucose Isomerase-Containing Streptomyces phaeochromogenes Cells in Fine-Particle Form. | Kumakura M, Yoshida M, Kaetsu I. | Appl Environ Microbiol | 10.1128/aem.37.2.310-315.1979 | 1979 | | |
| Metabolism | Novel marine actinobacteria from emerald Andaman & Nicobar Islands: a prospective source for industrial and pharmaceutical byproducts. | Meena B, Rajan LA, Vinithkumar NV, Kirubagaran R. | BMC Microbiol | 10.1186/1471-2180-13-145 | 2013 | |
| Crystal Structures of the Global Regulator DasR from Streptomyces coelicolor: Implications for the Allosteric Regulation of GntR/HutC Repressors. | Fillenberg SB, Friess MD, Korner S, Bockmann RA, Muller YA. | PLoS One | 10.1371/journal.pone.0157691 | 2016 | | |
| Metabolism | Underground isoleucine biosynthesis pathways in E. coli. | Cotton CA, Bernhardsgrutter I, He H, Burgener S, Schulz L, Paczia N, Dronsella B, Erban A, Toman S, Dempfle M, De Maria A, Kopka J, Lindner SN, Erb TJ, Bar-Even A. | Elife | 10.7554/elife.54207 | 2020 | |
| Metabolism | Accumulation of homolanthionine and activation of a novel pathway for isoleucine biosynthesis in Corynebacterium glutamicum McbR deletion strains. | Kromer JO, Heinzle E, Schroder H, Wittmann C. | J Bacteriol | 10.1128/jb.188.2.609-618.2006 | 2006 | |
| Enzymology | Isolation and characterization of a rolling-circle-type plasmid from Rhodococcus erythropolis and application of the plasmid to multiple-recombinant-protein expression. | Nakashima N, Tamura T. | Appl Environ Microbiol | 10.1128/aem.70.9.5557-5568.2004 | 2004 | |
| Purification and characterization of a trehalose synthase from the basidiomycete grifola frondosa | Saito K, Kase T, Takahashi E, Horinouchi S. | Appl Environ Microbiol | 10.1128/aem.64.11.4340-4345.1998 | 1998 | | |
| Metabolism | HIV-1 Nef binds a subpopulation of MHC-I throughout its trafficking itinerary and down-regulates MHC-I by perturbing both anterograde and retrograde trafficking. | Yi L, Rosales T, Rose JJ, Chowdhury B, Knutson JR, Venkatesan S. | J Biol Chem | 10.1074/jbc.m110.135947 | 2010 | |
| Enzymology | Free and immobilized glucose isomerase from Streptomyces phaeochromogenes. | Strandberg GW, Smiley KL. | Appl Microbiol | 10.1128/am.21.4.588-593.1971 | 1971 | |
| Phylogeny | Streptomyces albicerus sp. nov., a novel actinomycete isolated from the sediments of the Tailan River in Xinjiang, China. | Sun B, Yuan L, Xia Z, Wan C, Zhang L | Arch Microbiol | 10.1007/s00203-020-01871-6 | 2020 | |
| Phylogeny | Two new species of the genus Streptomyces: Streptomyces camponoti sp. nov. and Streptomyces cuticulae sp. nov. isolated from the cuticle of Camponotus japonicus Mayr. | Piao C, Zheng W, Li Y, Liu C, Jin L, Song W, Yan K, Wang X, Xiang W | Arch Microbiol | 10.1007/s00203-017-1353-6 | 2017 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive15463.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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