Name: Streptomyces olivaceoviridis DSM 40334
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15435

Type strain:

Species: Streptomyces olivaceoviridis

Culture col. no.: DSM 40334, ATCC 23630, ATCC 25478, CBS 888.69, IFO 13066, INA 11584, ISP 5334, NBRC 13066, RIA 1258, JCM 4499, BCRC 15145, CGMCC 4.1430, IMET 43128, KCTC 9132, LMG 19324, NCIMB 9982, NRRL B-12280, VKM Ac-1852

Strain history: KCC S-0499 <-- IFO 13066 <-- SAJ <-- ISP 5334 <-- INA 11584.

NCBI tax ID(s): 1921 (species)

SI-ID 14107

LMG 19324, ATCC 23630, ATCC 25478, DSM 40334, IFO 13066, IMET 43128, JCM 4499, NCIMB 9982, NRRL B-12280, VKM Ac-1852, CBS 888.69, AS 4.1430, KCTC 9132, NBRC 13066, BCRC 15145, CCRC 15145, CBS 888.29, NCIB 9982, CGMCC 4.1430

Other strains from Streptomyces olivaceoviridis

S. olivaceoviridis ST027462(HKI),

Section

Streptomyces olivaceoviridis DSM 40334 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces olivaceoviridis**
	Full Scientific Name (LPSN)	Streptomyces olivaceoviridis (Preobrazhenskaya and Ryabova 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonym

"Actinomyces olivaceoviridis"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %93.854

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #9466]

Culture medium composition

expand / minimize

[Ref.: #9466]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9466]	growth	28 °C
[Ref.: #18585]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9466]	Temperature range	mesophilic
[Ref.: #18585]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18585]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18585]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18585]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18585]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18585]	mannitol ChEBI	+
[Ref.: #18585]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18585]	raffinose ChEBI	-
[Ref.: #18585]	rhamnose ChEBI	+
[Ref.: #18585]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18585]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18585]	143	+	+	+	-	+	-	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9466]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18585]	Biosafety level	1	German classification
[Ref.: #9466]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces olivaceoviridis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4499	D44191	120	ENA	1921 tax ID	*
[Ref.: #20218]	Streptomyces olivaceoviridis strain KCTC 9132 16S ribosomal RNA gene, partial sequence	AY999812	1415	ENA	1921 tax ID	*
[Ref.: #20218]	Streptomyces olivaceoviridis gene for 16S rRNA, partial sequence, strain: NBRC 13066	AB184288	1477	ENA	1921 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces olivaceoviridis JCM 4499	GCA_014650115	scaffold	GenBank	1921 tax ID	*
[Ref.: #66792]	Streptomyces olivaceoviridis strain JCM 4499	1921.3	wgs	PATRIC	1921 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces olivaceoviridis JCM 4499 NCBI: GCA_014650115.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces olivaceoviridis JCM 4499 NCBI: GCA_014650115.1
[Ref.: #69480]	flagellated	no	97.695	no
[Ref.: #69480]	gram-positive	yes	87.709	no
[Ref.: #69480]	anaerobic	no	98.716	no
[Ref.: #69480]	aerobic	yes	92.5	no
[Ref.: #69480]	halophile	no	94.058	no
[Ref.: #69480]	spore-forming	yes	94.594	no
[Ref.: #69480]	glucose-util	yes	87.25	no
[Ref.: #69480]	thermophile	no	98.658	no
[Ref.: #69480]	motile	no	94.036	no
[Ref.: #69480]	glucose-ferment	no	89.677	no

Availability in culture collections External links

[Ref.: #9466]

Culture collection no.

DSM 40334, ATCC 23630, ATCC 25478, CBS 888.69, IFO 13066, INA 11584, ISP 5334, NBRC 13066, RIA 1258, JCM 4499, BCRC 15145, CGMCC 4.1430, IMET 43128, KCTC 9132, LMG 19324, NCIMB 9982, NRRL B-12280, VKM Ac-1852

[Ref.: #84522]

SI-ID 14107

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces monashensis sp. nov., a novel mangrove soil actinobacterium from East Malaysia with antioxidative potential.	Law JW, Ser HL, Ab Mutalib NS, Saokaew S, Duangjai A, Khan TM, Chan KG, Goh BH, Lee LH	Sci Rep	10.1038/s41598-019-39592-6	2019	*

References

#9466

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40334

#18585

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84522

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14107.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces olivaceoviridis JCM 4499

Streptomyces olivaceoviridis JCM 4499

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