Name: Streptomyces nogalater DSM 40546
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15429

Type strain:

Species: Streptomyces nogalater

Culture col. no.: DSM 40546, ATCC 27451, CBS 746.72, IFO 13445, ISP 5546, JCM 4553, NBRC 13445, NRRL 3035, RIA 1406, BCRC 12316, CBS 238.69, CGMCC 4.1442, CGMCC 4.2114, HAMBI 951, IMET 43360, JCM 4799, LMG 19338, LMG 5981, NBRC 101833, NCIMB 9489, VKM Ac-1290

Strain history: KCC S-0553 <-- NRRL 3035 <-- Upjohn Co., USA.

NCBI tax ID(s): 38314 (species)

SI-ID 5017

LMG 5981, ATCC 27451, CCRC 12316, DSM 40546, IFO 13445, IMET 43360, JCM 4553, JCM 4799, LMG 19338, NCIMB 9489, NRRL B-3035, VKM Ac-1290, NRRL 3035, CBS 238.69, AS 4.1442, NBRC 13445, BCRC 12316, HAMBI 951, NBRC 101833, CGMCC 4.2114, CGMCC 4.1442

Other strains from Streptomyces nogalater

S. nogalater ST005098(HKI), IMET 40284

Section

Streptomyces nogalater DSM 40546 is a mesophilic bacterium that produces antibiotic compounds.

antibiotic compound production
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces nogalater**
	Full Scientific Name (LPSN)	Streptomyces nogalater Bhuyan and Dietz 1966 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

Multimedia content

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Intellectual property rights:

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9631]	growth	28 °C
[Ref.: #18606]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9631]	Temperature range	mesophilic
[Ref.: #18606]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #9631]	Name of produced compound	nogalamycin
[Ref.: #20216]	Name of produced compound	Nogalamycin (Nogalacin, U-15167)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18606]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18606]	cellulose ChEBI	-
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18606]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18606]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #18606]	mannitol ChEBI	+
[Ref.: #18606]	myo-inositol ChEBI	-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #18606]	raffinose ChEBI	-
[Ref.: #18606]	rhamnose ChEBI	-
[Ref.: #18606]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18606]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	nogalamycin ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18606]	161	+	+	+	+	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18606]	246	not determinedn.d.	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	-	+	+	-

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18606]	Biosafety level	1	German classification
[Ref.: #9631]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9631]	Streptomyces nogalater gene for 16S rRNA, partial sequence, strain: NBRC 13445	AB184408	1477	ENA	38314 tax ID
[Ref.: #9631]	Streptomyces nogalater gene for 16S rRNA	AB045886	1485	ENA	38314 tax ID
[Ref.: #9631]	Streptomyces nogalater gene for 16S rRNA, partial sequece, strain:TT2-9	AB231805	1446	ENA	38314 tax ID
[Ref.: #20218]	Streptomyces nogalater gene for 16S ribosomal RNA, partial sequence, strain: JCM 4799	D44370	120	ENA	38314 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces nogalater ATCC 27451	2563366706	draft	JGI IMG/M	38314 tax ID	*
[Ref.: #66792]	Streptomyces nogalater ATCC27451	2582581468	draft	JGI IMG/M	38314 tax ID	*
[Ref.: #66792]	Streptomyces nogalater ATCC 27451	2563366707	draft	JGI IMG/M	38314 tax ID	*

Availability in culture collections External links

[Ref.: #9631]

Culture collection no.

DSM 40546, ATCC 27451, CBS 746.72, IFO 13445, ISP 5546, JCM 4553, NBRC 13445, NRRL 3035, RIA 1406, BCRC 12316, CBS 238.69, CGMCC 4.1442, CGMCC 4.2114, HAMBI 951, IMET 43360, JCM 4799, LMG 19338, LMG 5981, NBRC 101833, NCIMB 9489, VKM Ac-1290

[Ref.: #84516]

SI-ID 5017

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces roietensis sp. nov., an endophytic actinobacterium isolated from the surface-sterilized stem of jasmine rice, Oryza sativa KDML 105.	Kaewkla O, Franco CMM	Int J Syst Evol Microbiol	10.1099/ijsem.0.002402	2017	*
Phylogeny	Streptomyces canchipurensis sp. nov., isolated from a limestone habitat.	Li WJ, Nimaichand S, Jiang Z, Liu MJ, Khieu TN, Kim CJ, Hozzein WN, Park DJ, Wadaan MA, Ningthoujam DS	Antonie Van Leeuwenhoek	10.1007/s10482-014-0281-6	2014	*
Metabolism	Characterization of Streptomyces nogalater genes encoding enzymes involved in glycosylation steps in nogalamycin biosynthesis.	Torkkell S, Ylihonko K, Hakala J, Skurnik M, Mantsala P	Mol Gen Genet	10.1007/s004380050562	1997	*
Cultivation	Spontaneous and induced variability in Streptomyces nogalater producing nogalamycin.	Klanova K, Blumauerova M, Vanek Z	Folia Microbiol (Praha)	10.1007/BF02877658	1977	*

References

#9631

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40546

#18606

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#84516

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID5017.1 )

* These data were automatically processed and therefore are not curated

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